Wall clock time and date at job start Mon Mar 30 2020 18:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 102.99893 * 2 1 4 4 C 1.53120 * 109.52184 * 175.00117 * 3 2 1 5 5 C 1.53039 * 109.27940 * 177.62593 * 4 3 2 6 6 N 1.46844 * 109.52178 * 300.81941 * 5 4 3 7 7 C 1.46901 * 111.00526 * 185.84060 * 6 5 4 8 8 C 1.52992 * 109.47859 * 170.00090 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.46848 * 111.20087 * 61.74385 * 6 5 4 19 19 C 1.53048 * 109.52064 * 298.25789 * 18 6 5 20 20 H 1.09001 * 109.47249 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47362 * 299.99756 * 1 2 3 22 22 H 1.09001 * 109.47539 * 60.00300 * 1 2 3 23 23 H 1.09002 * 109.52530 * 54.87820 * 3 2 1 24 24 H 1.09004 * 109.50479 * 57.68181 * 4 3 2 25 25 H 1.08998 * 109.50625 * 297.56495 * 4 3 2 26 26 H 1.09003 * 109.46575 * 180.80459 * 5 4 3 27 27 H 1.08995 * 109.45502 * 60.82603 * 5 4 3 28 28 H 1.09002 * 109.46980 * 49.99749 * 7 6 5 29 29 H 1.09001 * 109.46628 * 290.00171 * 7 6 5 30 30 H 1.09002 * 109.47103 * 59.99734 * 8 7 6 31 31 H 1.08998 * 109.46862 * 300.00546 * 8 7 6 32 32 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 33 33 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.46339 * 58.26808 * 18 6 5 36 36 H 1.08994 * 109.46869 * 178.24483 * 18 6 5 37 37 H 1.08998 * 109.49998 * 299.23732 * 19 18 6 38 38 H 1.08994 * 109.50211 * 179.11499 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7379 1.9427 0.1258 5 6 4.0811 3.4329 0.0656 6 7 3.6094 3.9941 -1.2067 7 6 4.0429 5.3893 -1.3598 8 6 3.7538 5.8598 -2.7866 9 6 4.2047 7.3131 -2.9457 10 6 3.9205 7.7763 -4.3513 11 1 3.4635 7.1017 -5.0601 12 6 4.2429 9.0616 -4.7320 13 7 4.7989 9.8832 -3.8687 14 14 3.8900 9.6359 -6.4741 15 1 2.5282 10.2251 -6.5348 16 1 4.8903 10.6596 -6.8702 17 1 3.9709 8.4798 -7.4025 18 6 2.1505 3.8800 -1.3291 19 6 1.7496 2.4030 -1.3105 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.7280 2.2554 0.8403 24 1 4.2337 1.4217 -0.6934 25 1 4.0744 1.5299 1.0768 26 1 5.1611 3.5602 0.1405 27 1 3.5960 3.9508 0.8930 28 1 5.1126 5.4610 -1.1633 29 1 3.5008 6.0177 -0.6531 30 1 2.6840 5.7881 -2.9830 31 1 4.2958 5.2313 -3.4931 32 1 5.2744 7.3852 -2.7490 33 1 3.6623 7.9412 -2.2390 34 1 5.0261 10.7874 -4.1367 35 1 1.6746 4.3958 -0.4951 36 1 1.8281 4.3319 -2.2671 37 1 2.2141 1.8894 -2.1522 38 1 0.6655 2.3193 -1.3855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300906851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:36 Heat of formation + Delta-G solvation = -40.925584 kcal Electronic energy + Delta-G solvation = -15527.964948 eV Core-core repulsion = 13108.691753 eV Total energy + Delta-G solvation = -2419.273194 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 243.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.06909 -36.39912 -34.77773 -32.64287 -31.91733 -29.69757 -28.45076 -25.74445 -24.22704 -23.56784 -21.55720 -20.87113 -18.50819 -17.62758 -16.70782 -16.42711 -16.30563 -15.68436 -15.29944 -15.04779 -14.82668 -14.74532 -14.30394 -14.15564 -13.71031 -13.44996 -13.35025 -12.89166 -12.71189 -12.48279 -12.46213 -12.21398 -12.12237 -11.86927 -11.53658 -11.37389 -11.26990 -11.09424 -10.68643 -10.54082 -9.26878 -8.68058 -8.19964 -6.30840 0.73304 1.40199 1.41632 1.53057 1.65005 2.41187 2.92768 3.13198 3.64443 3.68046 4.04353 4.08872 4.23569 4.31600 4.32231 4.35983 4.42458 4.48900 4.58311 4.65098 4.72495 4.79131 4.88978 4.91069 4.93818 5.01946 5.11024 5.12744 5.25609 5.30517 5.52768 5.75182 5.86468 6.09299 6.20750 6.28495 6.86067 7.38375 8.91987 Molecular weight = 243.14amu Principal moments of inertia in cm(-1) A = 0.048298 B = 0.003812 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.593421 B = 7343.466481 C = 7731.273528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.303 6.303 3 C -0.041 4.041 4 C -0.088 4.088 5 C 0.059 3.941 6 N -0.546 5.546 7 C 0.069 3.931 8 C -0.089 4.089 9 C 0.026 3.974 10 C -0.543 4.543 11 H 0.058 0.942 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.054 3.946 19 C -0.101 4.101 20 H 0.111 0.889 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.050 0.950 31 H 0.050 0.950 32 H -0.008 1.008 33 H -0.010 1.010 34 H 0.264 0.736 35 H 0.033 0.967 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.813 -18.124 9.523 21.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.075 6.075 3 C -0.170 4.170 4 C -0.127 4.127 5 C -0.070 4.070 6 N -0.271 5.271 7 C -0.059 4.059 8 C -0.127 4.127 9 C -0.012 4.012 10 C -0.581 4.581 11 H 0.077 0.923 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.075 4.075 19 C -0.140 4.140 20 H 0.130 0.870 21 H 0.103 0.897 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.010 0.990 33 H 0.009 0.991 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.886 -19.175 9.197 22.354 hybrid contribution -1.120 2.250 -0.123 2.516 sum -8.006 -16.925 9.074 20.806 Atomic orbital electron populations 1.23438 0.91607 1.07357 1.05694 1.86949 1.10392 1.12122 1.98003 1.23175 1.00354 0.92616 1.00834 1.21356 0.92421 0.95569 1.03361 1.22125 1.01000 0.94435 0.89436 1.61936 1.12378 1.18323 1.34466 1.21997 1.00093 0.87176 0.96633 1.21399 0.99997 0.95996 0.95341 1.18971 0.94728 0.92180 0.95306 1.21695 1.40207 0.97853 0.98305 0.92332 1.25987 0.94858 0.97019 1.02020 1.70095 1.43492 1.06992 1.36840 0.85446 0.78105 0.78186 0.79319 1.19694 1.20690 1.18787 1.22158 0.87447 0.96701 1.01231 1.21846 1.01110 0.94338 0.96754 0.87039 0.89690 0.89814 0.89295 0.91131 0.89419 0.89809 0.94461 0.91201 0.95648 0.93134 0.93098 0.98973 0.99134 0.92765 0.94831 0.90848 0.90892 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.47 113.37 1.19 -0.26 16 2 S -0.30 -5.86 21.80 -56.49 -1.23 -7.09 16 3 C -0.04 -0.80 2.72 30.67 0.08 -0.71 16 4 C -0.09 -1.79 5.39 30.65 0.17 -1.62 16 5 C 0.06 1.38 5.46 86.33 0.47 1.85 16 6 N -0.55 -15.76 4.66 -896.37 -4.17 -19.94 16 7 C 0.07 2.38 4.96 86.30 0.43 2.81 16 8 C -0.09 -3.77 5.08 30.59 0.16 -3.61 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 11 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 12 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 13 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 14 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 C 0.05 1.41 5.29 86.33 0.46 1.86 16 19 C -0.10 -2.13 5.26 30.65 0.16 -1.97 16 20 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.08 1.01 7.24 -2.39 -0.02 0.99 16 23 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.89 8.02 -2.39 -0.02 1.87 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 2.42 7.99 -2.39 -0.02 2.40 16 29 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 30 H 0.05 2.07 6.43 -2.39 -0.02 2.06 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 2.11 6.21 -2.39 -0.01 2.09 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.42 7.06 -2.39 -0.02 1.41 16 Total: -1.00 -64.09 311.44 1.85 -62.24 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 0.99 Total: 6.14 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.95 Total: -30.94 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -3.89 Total: -77.06 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.23 Total: -7.09 kcal Total: -64.09 1.85 -62.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300906851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.312 kcal (2) G-P(sol) polarization free energy of solvation -64.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds