Wall clock time and date at job start Mon Mar 30 2020 18:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46901 * 109.47432 * 2 1 4 4 C 1.46907 * 110.99807 * 65.80472 * 3 2 1 5 5 C 1.50703 * 109.46831 * 70.85023 * 4 3 2 6 6 H 1.08003 * 120.00193 * 5.03020 * 5 4 3 7 7 C 1.37876 * 119.99910 * 185.03630 * 5 4 3 8 8 N 1.31516 * 120.00066 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99879 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47176 * 90.00288 * 9 7 5 11 11 H 1.48501 * 109.46789 * 209.99825 * 9 7 5 12 12 H 1.48492 * 109.47360 * 329.99941 * 9 7 5 13 13 C 1.46904 * 110.99868 * 301.85550 * 3 2 1 14 14 C 1.52995 * 109.46778 * 284.31457 * 13 3 2 15 15 O 1.42899 * 110.75373 * 70.02763 * 14 13 3 16 16 C 1.42896 * 114.00072 * 176.15509 * 15 14 13 17 17 C 1.55305 * 110.84401 * 193.72102 * 14 13 3 18 18 C 1.54947 * 100.94105 * 152.32461 * 17 14 13 19 19 O 1.43642 * 105.13699 * 323.55003 * 18 17 14 20 20 C 1.43239 * 109.96722 * 24.43205 * 19 18 17 21 21 H 1.08993 * 109.47601 * 65.21657 * 1 2 3 22 22 H 1.09005 * 109.47088 * 305.21673 * 1 2 3 23 23 H 1.08999 * 109.47108 * 185.22259 * 1 2 3 24 24 H 1.09004 * 109.47234 * 120.00335 * 2 1 3 25 25 H 1.09005 * 109.47002 * 240.00118 * 2 1 3 26 26 H 1.08996 * 109.47258 * 190.85131 * 4 3 2 27 27 H 1.09002 * 109.47083 * 310.85186 * 4 3 2 28 28 H 0.96995 * 119.99920 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46885 * 44.31722 * 13 3 2 30 30 H 1.09003 * 109.47017 * 164.31570 * 13 3 2 31 31 H 1.08997 * 109.47542 * 292.22489 * 16 15 14 32 32 H 1.09008 * 109.47254 * 52.21762 * 16 15 14 33 33 H 1.09001 * 109.47542 * 172.21735 * 16 15 14 34 34 H 1.09006 * 111.12704 * 270.24282 * 17 14 13 35 35 H 1.08999 * 111.13138 * 34.40440 * 17 14 13 36 36 H 1.09003 * 110.30656 * 204.63880 * 18 17 14 37 37 H 1.08994 * 110.31337 * 82.47263 * 18 17 14 38 38 H 1.09002 * 109.82845 * 238.76876 * 20 19 18 39 39 H 1.08999 * 109.90704 * 117.84535 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6652 2.0687 1.2510 5 6 2.4887 1.5068 2.3812 6 1 3.2602 0.7790 2.1774 7 6 2.2572 1.9219 3.6755 8 7 1.3180 2.8084 3.9237 9 14 3.2774 1.2249 5.0764 10 1 4.4790 2.0728 5.2833 11 1 2.4647 1.2067 6.3192 12 1 3.6996 -0.1586 4.7407 13 6 1.5128 2.1226 -1.1649 14 6 2.2815 1.6914 -2.4155 15 8 1.9396 0.3537 -2.7839 16 6 2.5536 -0.0905 -3.9953 17 6 2.0241 2.6755 -3.5890 18 6 3.3373 2.5200 -4.3966 19 8 4.3669 2.3507 -3.4094 20 6 3.8038 1.8299 -2.1997 21 1 -0.3634 0.4307 -0.9329 22 1 -0.3633 0.5926 0.8396 23 1 -0.3633 -1.0234 0.0935 24 1 1.8933 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8651 3.1355 1.1513 27 1 0.6068 1.9154 1.4616 28 1 1.1549 3.1001 4.8342 29 1 0.4525 1.9075 -1.2979 30 1 1.6493 3.1922 -1.0052 31 1 2.1430 0.4676 -4.8367 32 1 3.6295 0.0758 -3.9396 33 1 2.3570 -1.1536 -4.1338 34 1 1.1612 2.3664 -4.1790 35 1 1.9044 3.6965 -3.2266 36 1 3.5251 3.4152 -4.9894 37 1 3.2834 1.6429 -5.0413 38 1 3.9996 2.5158 -1.3755 39 1 4.2363 0.8541 -1.9790 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602437708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:53 Heat of formation + Delta-G solvation = -94.613598 kcal Electronic energy + Delta-G solvation = -19161.276378 eV Core-core repulsion = 16296.922226 eV Total energy + Delta-G solvation = -2864.354152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.56673 -38.68222 -37.34902 -34.75361 -32.91900 -31.17359 -30.73023 -28.47149 -27.58206 -26.01301 -24.85507 -23.37599 -21.86669 -20.65660 -18.58907 -18.33380 -17.24118 -16.76083 -16.60325 -16.24401 -16.08989 -15.49677 -15.34952 -14.92577 -14.65646 -14.27965 -13.77885 -13.56475 -13.41656 -13.12483 -13.01169 -12.93342 -12.63793 -12.49619 -12.40259 -12.23975 -12.12781 -11.84661 -11.65434 -11.40635 -11.16367 -10.59379 -10.54347 -10.24188 -8.88985 -8.16934 -6.25743 1.41337 1.42185 1.53324 2.41661 2.70722 2.96340 3.15309 3.19463 3.61991 3.72626 3.95182 4.16296 4.20969 4.34596 4.43174 4.51473 4.53914 4.59526 4.67381 4.72633 4.76576 4.80736 4.83309 4.90131 4.98394 5.02198 5.14633 5.15035 5.31566 5.39237 5.57905 5.71651 5.97383 6.11998 6.26457 6.43081 6.68557 6.91307 7.43419 8.93186 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.032638 B = 0.006314 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.684617 B = 4433.243299 C = 4682.132551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.063 3.937 3 N -0.537 5.537 4 C 0.203 3.797 5 C -0.516 4.516 6 H 0.058 0.942 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.964 3.036 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.068 3.932 14 C 0.102 3.898 15 O -0.375 6.375 16 C 0.012 3.988 17 C -0.175 4.175 18 C 0.032 3.968 19 O -0.404 6.404 20 C 0.049 3.951 21 H 0.061 0.939 22 H 0.030 0.970 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.090 0.910 26 H -0.002 1.002 27 H -0.019 1.019 28 H 0.263 0.737 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 -3.341 -17.231 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.065 4.065 3 N -0.260 5.260 4 C 0.077 3.923 5 C -0.555 4.555 6 H 0.076 0.924 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.191 1.191 13 C -0.060 4.060 14 C 0.061 3.939 15 O -0.294 6.294 16 C -0.084 4.084 17 C -0.213 4.213 18 C -0.044 4.044 19 O -0.324 6.324 20 C -0.028 4.028 21 H 0.080 0.920 22 H 0.049 0.951 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.017 0.983 27 H -0.001 1.001 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.892 -3.333 -17.036 17.382 hybrid contribution -0.576 0.080 1.148 1.287 sum 0.316 -3.252 -15.888 16.220 Atomic orbital electron populations 1.22213 0.98562 1.01821 1.00596 1.22044 0.92828 0.90127 1.01523 1.62222 1.58918 1.02742 1.02096 1.19460 0.93722 0.92533 0.86614 1.21446 1.18049 1.24155 0.91844 0.92414 1.25831 0.96579 0.95596 1.01490 1.70073 1.33525 1.32865 1.21072 0.85467 0.78472 0.79013 0.78174 1.20013 1.20812 1.19097 1.22050 0.97188 0.97754 0.89047 1.22905 0.93321 0.83537 0.94098 1.88008 1.70635 1.28404 1.42392 1.23265 0.97363 1.01158 0.86595 1.23835 0.99901 1.00778 0.96815 1.23994 0.85594 1.03307 0.91468 1.88385 1.34304 1.86022 1.23736 1.23419 0.93314 0.99162 0.86908 0.92037 0.95072 0.91532 0.93245 0.89162 0.98343 1.00102 0.92827 0.93297 0.90562 0.91729 0.93873 0.88509 0.87340 0.88877 0.88027 0.89626 0.91521 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.33 9.24 71.98 0.67 -5.66 16 2 C 0.06 2.49 5.64 86.30 0.49 2.98 16 3 N -0.54 -23.02 4.01 -900.76 -3.61 -26.63 16 4 C 0.20 10.72 4.61 85.56 0.39 11.12 16 5 C -0.52 -29.54 8.41 25.60 0.22 -29.32 16 6 H 0.06 3.29 7.63 -2.91 -0.02 3.27 16 7 C 0.00 0.16 5.46 84.65 0.46 0.62 16 8 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 C 0.07 2.40 4.17 86.30 0.36 2.76 16 14 C 0.10 2.94 1.03 -9.54 -0.01 2.93 16 15 O -0.38 -10.40 7.94 -148.98 -1.18 -11.59 16 16 C 0.01 0.24 9.06 113.37 1.03 1.26 16 17 C -0.18 -3.77 5.74 32.05 0.18 -3.59 16 18 C 0.03 0.65 6.85 72.65 0.50 1.15 16 19 O -0.40 -11.81 10.98 -148.98 -1.64 -13.44 16 20 C 0.05 1.56 5.76 72.45 0.42 1.98 16 21 H 0.06 2.05 6.34 -2.39 -0.02 2.03 16 22 H 0.03 1.31 6.14 -2.38 -0.01 1.30 16 23 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.05 2.19 7.18 -2.39 -0.02 2.17 16 25 H 0.09 3.27 5.80 -2.38 -0.01 3.26 16 26 H 0.00 -0.09 7.71 -2.39 -0.02 -0.10 16 27 H -0.02 -1.06 5.96 -2.39 -0.01 -1.08 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.05 1.69 5.66 -2.38 -0.01 1.67 16 30 H 0.08 2.72 7.47 -2.39 -0.02 2.71 16 31 H 0.06 1.01 5.82 -2.39 -0.01 1.00 16 32 H 0.04 0.94 5.82 -2.38 -0.01 0.92 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.90 7.89 -2.38 -0.02 1.88 16 35 H 0.09 1.97 7.90 -2.39 -0.02 1.95 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.44 4.92 -2.39 -0.01 1.43 16 38 H 0.07 2.46 7.75 -2.39 -0.02 2.44 16 39 H 0.07 2.21 7.74 -2.39 -0.02 2.19 16 Total: -1.00 -64.85 293.53 1.61 -63.23 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.03 Total: 11.38 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.70 Total: -13.78 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -3.32 Total: -82.82 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -2.82 Total: -25.03 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.85 1.61 -63.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602437708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.382 kcal (2) G-P(sol) polarization free energy of solvation -64.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds