Wall clock time and date at job start Mon Mar 30 2020 18:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46697 * 2 1 4 4 C 1.52997 * 109.47493 * 240.00360 * 2 1 3 5 5 C 1.53003 * 109.47167 * 175.00079 * 4 2 1 6 6 C 1.50698 * 109.47195 * 180.02562 * 5 4 2 7 7 H 1.08009 * 119.99910 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00351 * 180.02562 * 6 5 4 9 9 N 1.31524 * 119.99612 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00301 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47411 * 59.99831 * 10 8 6 12 12 H 1.48502 * 109.47150 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47213 * 299.99697 * 10 8 6 14 14 N 1.46902 * 109.46984 * 119.99636 * 2 1 3 15 15 C 1.48530 * 110.99584 * 49.42144 * 14 2 1 16 16 C 1.54945 * 103.22621 * 200.27585 * 15 14 2 17 17 C 1.54598 * 102.91793 * 37.41177 * 16 15 14 18 18 C 1.52998 * 110.39360 * 97.00519 * 17 16 15 19 19 C 1.53001 * 110.30895 * 219.12620 * 17 16 15 20 20 F 1.39907 * 109.47140 * 295.72122 * 19 17 16 21 21 C 1.47893 * 111.00203 * 292.02264 * 14 2 1 22 22 H 1.09005 * 109.46953 * 172.38478 * 1 2 3 23 23 H 1.08998 * 109.47469 * 292.38956 * 1 2 3 24 24 H 1.08999 * 109.47145 * 52.39478 * 1 2 3 25 25 H 1.08996 * 109.47206 * 54.99686 * 4 2 1 26 26 H 1.09001 * 109.47013 * 294.99532 * 4 2 1 27 27 H 1.08996 * 109.46958 * 59.99378 * 5 4 2 28 28 H 1.09001 * 109.46707 * 299.99641 * 5 4 2 29 29 H 0.96998 * 119.99671 * 179.97438 * 9 8 6 30 30 H 1.09002 * 110.66648 * 318.70492 * 15 14 2 31 31 H 1.08995 * 110.67521 * 81.83999 * 15 14 2 32 32 H 1.08998 * 110.72304 * 279.05627 * 16 15 14 33 33 H 1.09000 * 110.87635 * 155.84151 * 16 15 14 34 34 H 1.09004 * 109.47244 * 304.22997 * 18 17 16 35 35 H 1.09000 * 109.47319 * 64.23104 * 18 17 16 36 36 H 1.08998 * 109.47236 * 184.23079 * 18 17 16 37 37 H 1.09006 * 109.46879 * 55.71809 * 19 17 16 38 38 H 1.09003 * 109.47351 * 175.71708 * 19 17 16 39 39 H 1.09008 * 109.91892 * 265.19423 * 21 14 2 40 40 H 1.08999 * 109.92057 * 26.29097 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0673 -1.3229 -2.5444 7 1 3.3688 -1.8034 -3.2136 8 6 5.4185 -1.3599 -2.8157 9 7 6.2691 -0.7752 -2.0005 10 14 6.0413 -2.2402 -4.3409 11 1 5.4496 -1.6138 -5.5503 12 1 7.5213 -2.1353 -4.4034 13 1 5.6481 -3.6710 -4.2818 14 7 2.0196 -0.6924 1.1995 15 6 1.3465 -2.0057 1.3679 16 6 1.5628 -2.3251 2.8686 17 6 1.4241 -0.9396 3.5402 18 6 0.0065 -0.7502 4.0839 19 6 2.4483 -0.7908 4.6671 20 9 2.1742 -1.7241 5.6727 21 6 1.7082 0.0800 2.4217 22 1 -0.3633 -1.0187 -0.1362 23 1 -0.3634 0.3914 0.9502 24 1 -0.3633 0.6271 -0.8141 25 1 1.6054 -0.2616 -2.1369 26 1 1.7518 -1.7714 -1.2056 27 1 3.9994 -1.0726 -0.4258 28 1 3.8532 0.4371 -1.3572 29 1 7.2198 -0.8015 -2.1911 30 1 0.2834 -1.9250 1.1411 31 1 1.8182 -2.7629 0.7416 32 1 2.5581 -2.7369 3.0357 33 1 0.7973 -3.0095 3.2343 34 1 -0.7138 -0.8953 3.2788 35 1 -0.1799 -1.4778 4.8738 36 1 -0.0966 0.2575 4.4864 37 1 3.4497 -0.9646 4.2732 38 1 2.3901 0.2162 5.0804 39 1 2.5602 0.7028 2.6946 40 1 0.8309 0.7045 2.2528 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172492462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:03 Heat of formation + Delta-G solvation = -67.106090 kcal Electronic energy + Delta-G solvation = -18459.064606 eV Core-core repulsion = 15608.276058 eV Total energy + Delta-G solvation = -2850.788548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.169 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.59326 -39.63466 -35.60086 -33.00437 -31.07106 -29.65620 -28.62360 -27.06910 -25.43449 -24.45978 -22.52131 -20.89365 -19.42556 -18.70403 -16.23810 -15.98419 -15.95555 -15.71303 -15.46967 -14.49788 -14.40561 -13.75222 -13.61631 -12.99092 -12.82928 -12.72776 -12.50199 -12.29968 -11.82267 -11.66237 -11.57904 -11.24419 -11.04321 -10.91569 -10.89274 -10.74004 -10.47181 -10.40287 -10.32992 -10.12119 -9.61327 -9.19124 -8.89487 -8.22955 -7.84474 -5.87949 -3.89399 3.38752 3.43082 3.45472 4.30458 4.39034 4.49009 4.54415 4.64448 5.01074 5.13247 5.25334 5.33854 5.38087 5.42120 5.47394 5.54016 5.58100 5.64063 5.72654 5.79212 5.80822 5.91042 6.01389 6.09718 6.21104 6.23392 6.28946 6.37116 6.42695 6.66609 6.85161 7.28269 7.34164 7.54203 7.84873 8.07508 8.22851 8.57502 9.19375 9.73244 11.23084 Molecular weight = 243.17amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.005314 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.328251 B = 5267.756994 C = 5758.136052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.076 0.924 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.493 5.493 15 C 0.030 3.970 16 C -0.111 4.111 17 C -0.104 4.104 18 C -0.138 4.138 19 C 0.075 3.925 20 F -0.220 7.220 21 C 0.042 3.958 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.008 0.992 29 H 0.259 0.741 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 1.037 12.012 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.037 4.037 3 H 0.095 0.905 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.216 5.216 15 C -0.097 4.097 16 C -0.149 4.149 17 C -0.105 4.105 18 C -0.195 4.195 19 C 0.020 3.980 20 F -0.201 7.201 21 C -0.086 4.086 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.219 1.002 11.978 16.442 hybrid contribution -0.458 -0.314 -0.791 0.967 sum -11.677 0.689 11.187 16.186 Atomic orbital electron populations 1.22522 0.98865 1.01871 1.01169 1.21999 0.91130 0.98730 0.91817 0.90537 1.21649 1.00767 0.98239 0.92998 1.18995 0.88099 0.96647 0.97000 1.21302 0.91846 1.34186 1.08470 0.93198 1.24990 0.97122 0.95759 0.96484 1.69973 1.02212 1.44307 1.36940 0.86745 0.77599 0.80280 0.83842 1.20423 1.21381 1.20382 1.64994 1.53551 1.02298 1.00799 1.23313 0.97479 0.93134 0.95781 1.22579 1.02560 0.94906 0.94898 1.22005 0.95742 0.97468 0.95271 1.21856 0.94878 1.01755 1.01025 1.22118 0.99616 0.90705 0.85584 1.92731 1.95505 1.68764 1.63098 1.22907 1.00306 0.95542 0.89849 0.92336 0.93291 0.92327 0.93400 0.93468 0.94988 0.97330 0.93174 0.93333 0.89559 0.90511 0.91204 0.92349 0.92020 0.92570 0.89963 0.91054 0.90445 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 8.19 37.16 0.30 -2.23 16 2 C 0.07 1.21 2.28 -67.71 -0.15 1.06 16 3 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 4 C -0.10 -2.04 4.63 -26.73 -0.12 -2.17 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 7 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.48 13.29 55.43 0.74 -26.75 16 10 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.49 -8.06 4.70 -222.50 -1.04 -9.11 16 15 C 0.03 0.45 5.56 -1.90 -0.01 0.44 16 16 C -0.11 -1.43 6.03 -24.87 -0.15 -1.58 16 17 C -0.10 -1.21 0.80 -153.15 -0.12 -1.33 16 18 C -0.14 -1.38 8.10 37.16 0.30 -1.08 16 19 C 0.07 0.83 6.06 37.16 0.23 1.06 16 20 F -0.22 -2.81 16.63 2.25 0.04 -2.78 16 21 C 0.04 0.56 5.76 -2.76 -0.02 0.54 16 22 H 0.06 0.79 6.40 -51.93 -0.33 0.45 16 23 H 0.05 0.60 6.26 -51.93 -0.32 0.27 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.97 7.08 -51.93 -0.37 0.60 16 27 H 0.03 0.90 7.75 -51.93 -0.40 0.50 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.05 0.66 5.47 -51.93 -0.28 0.37 16 31 H 0.09 1.41 7.64 -51.93 -0.40 1.02 16 32 H 0.08 1.06 7.84 -51.93 -0.41 0.65 16 33 H 0.07 0.80 7.86 -51.93 -0.41 0.40 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.62 7.75 -51.93 -0.40 0.21 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.02 7.68 -51.92 -0.40 0.62 16 40 H 0.05 0.61 5.54 -51.93 -0.29 0.33 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -30.69 310.68 -7.83 -38.53 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.93 Total: -3.24 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -0.29 Total: -18.39 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.31 Total: -35.85 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.69 -7.83 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.581 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds