Wall clock time and date at job start Mon Mar 30 2020 18:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48501 * 109.46807 * 239.99611 * 3 2 1 5 5 H 1.48498 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47057 * 119.99502 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99923 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 H 1.09000 * 110.30734 * 59.29782 * 15 14 13 17 17 C 1.53711 * 110.34481 * 181.46823 * 15 14 13 18 18 C 1.52938 * 112.49266 * 116.04270 * 17 15 14 19 19 C 1.55161 * 108.95908 * 30.10451 * 18 17 15 20 20 S 1.83401 * 110.33999 * 297.12467 * 15 14 13 21 21 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 23 23 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 24 24 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 25 25 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 26 26 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 27 27 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 28 28 H 1.08997 * 108.88983 * 236.84132 * 17 15 14 29 29 H 1.09005 * 108.88485 * 355.25507 * 17 15 14 30 30 H 1.08996 * 109.60497 * 150.03145 * 18 17 15 31 31 H 1.08998 * 109.60672 * 270.17434 * 18 17 15 32 32 H 1.09003 * 111.12927 * 76.47216 * 19 18 17 33 33 H 1.09002 * 111.13074 * 200.60338 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5581 -5.1056 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3309 -8.2507 -0.0091 16 1 3.9538 -8.0864 0.8701 17 6 2.8409 -9.7070 -0.0520 18 6 3.2617 -10.4285 -1.3331 19 6 4.6049 -9.8313 -1.8299 20 16 4.3183 -8.0350 -1.5395 21 1 -0.4849 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 3.1566 -3.4356 0.0009 25 1 3.5831 -5.7306 0.0012 26 1 1.5361 -7.4641 0.8857 27 1 1.5347 -7.4565 -0.8942 28 1 3.2497 -10.2422 0.8050 29 1 1.7530 -9.7153 0.0165 30 1 3.3874 -11.4918 -1.1296 31 1 2.4965 -10.2931 -2.0974 32 1 5.4414 -10.1959 -1.2337 33 1 4.7599 -10.0396 -2.8886 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260757708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:52 Heat of formation + Delta-G solvation = -70.346024 kcal Electronic energy + Delta-G solvation = -15129.514421 eV Core-core repulsion = 12507.706455 eV Total energy + Delta-G solvation = -2621.807966 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90022 -37.75982 -36.17722 -35.45170 -34.32138 -31.50609 -29.16207 -26.98085 -24.91711 -23.89310 -22.06124 -21.26980 -19.70867 -18.16036 -17.74776 -17.59411 -16.62691 -16.56529 -16.06318 -15.40300 -15.19329 -14.90331 -14.82300 -14.13382 -14.01105 -13.81091 -13.16147 -12.92599 -12.68391 -12.62359 -12.44192 -12.38018 -12.22717 -11.52420 -11.49861 -11.25680 -10.84901 -10.79138 -10.27891 -9.60215 -8.73908 -8.27926 -6.44665 0.82011 1.40412 1.43502 1.48391 1.56315 1.87869 2.22615 2.40244 3.06708 3.45138 3.54681 3.67465 3.90290 4.07315 4.21823 4.37485 4.52159 4.62387 4.75800 4.84905 5.03044 5.05272 5.09324 5.23550 5.26804 5.46641 5.49097 5.66001 5.84898 6.20969 6.66453 7.23309 7.27538 7.69170 8.84368 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.052889 B = 0.004000 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.279676 B = 6998.927956 C = 7361.940752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.082 0.918 9 C 0.286 3.714 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.732 5.732 14 C 0.156 3.844 15 C -0.032 4.032 16 H 0.116 0.884 17 C -0.124 4.124 18 C -0.122 4.122 19 C -0.055 4.055 20 S -0.356 6.356 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.013 1.013 24 H 0.403 0.597 25 H 0.406 0.594 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -21.673 -0.434 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.100 0.900 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.392 3.608 12 O -0.531 6.531 13 N -0.389 5.389 14 C 0.030 3.970 15 C -0.161 4.161 16 H 0.134 0.866 17 C -0.163 4.163 18 C -0.160 4.160 19 C -0.202 4.202 20 S -0.130 6.130 21 H 0.078 0.922 22 H 0.003 0.997 23 H 0.005 0.995 24 H 0.238 0.762 25 H 0.242 0.758 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.379 -20.767 -1.042 23.703 hybrid contribution 0.299 0.275 0.495 0.640 sum 11.679 -20.492 -0.548 23.592 Atomic orbital electron populations 1.70141 1.08264 1.28669 1.49832 1.26076 0.95810 1.03873 0.93782 0.85174 0.77883 0.76464 0.79471 1.18770 1.20918 1.18596 1.21572 0.94275 0.90530 1.53147 0.89964 1.18419 0.88080 0.83289 0.93983 1.45319 1.10866 1.03903 1.77643 1.16280 0.85065 0.81579 0.77890 1.90831 1.16545 1.84972 1.60730 1.44938 1.08845 1.04764 1.80387 1.21278 0.95209 0.78389 1.02109 1.23970 0.96787 0.98274 0.97021 0.86580 1.22051 1.03383 0.90613 1.00241 1.22390 0.95266 1.01675 0.96713 1.24509 1.01309 0.88498 1.05930 1.88492 1.70495 1.17142 1.36877 0.92183 0.99737 0.99461 0.76177 0.75805 0.90650 0.92535 0.88228 0.89621 0.87278 0.91138 0.87535 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.99 43.22 29.54 68.60 2.03 45.25 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.56 -31.41 9.28 25.60 0.24 -31.17 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.29 16.48 5.43 85.63 0.46 16.94 16 10 N -0.72 -33.26 5.55 -482.28 -2.68 -35.94 16 11 C 0.69 30.76 8.57 179.05 1.53 32.30 16 12 O -0.65 -34.92 16.34 -4.01 -0.07 -34.98 16 13 N -0.73 -23.35 5.34 -478.54 -2.55 -25.91 16 14 C 0.16 4.08 4.90 86.38 0.42 4.50 16 15 C -0.03 -0.56 3.40 30.83 0.10 -0.46 16 16 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.12 -1.44 6.03 30.81 0.19 -1.26 16 18 C -0.12 -1.20 6.34 31.31 0.20 -1.00 16 19 C -0.05 -0.65 7.53 72.72 0.55 -0.10 16 20 S -0.36 -7.50 22.14 -56.49 -1.25 -8.75 16 21 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 22 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 23 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 24 H 0.40 15.60 8.34 -92.71 -0.77 14.82 16 25 H 0.41 10.93 8.17 -92.71 -0.76 10.18 16 26 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 1.04 7.62 -2.38 -0.02 1.03 16 30 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -75.74 291.91 -0.49 -76.23 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -0.41 Total: 20.68 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 4.16 Total: 20.46 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -4.95 Total: -118.88 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.07 Total: -34.98 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -7.50 SS G_CDS: -1.25 Total: -8.75 kcal Total: -75.74 -0.49 -76.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260757708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.885 kcal (2) G-P(sol) polarization free energy of solvation -75.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds