Wall clock time and date at job start Mon Mar 30 2020 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00080 * 2 1 4 4 H 1.48498 * 109.46754 * 239.99654 * 3 2 1 5 5 H 1.48497 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47589 * 119.99525 * 3 2 1 7 7 C 1.37883 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99616 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00135 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.35846 * 116.99884 * 180.02562 * 10 9 7 12 12 C 1.38882 * 119.90906 * 179.97438 * 11 10 9 13 13 C 1.37835 * 120.08134 * 179.97438 * 12 11 10 14 14 C 1.39595 * 119.91526 * 0.02562 * 13 12 11 15 15 C 1.47848 * 120.08478 * 179.97438 * 14 13 12 16 16 N 1.31475 * 125.84121 * 359.97438 * 15 14 13 17 17 C 1.33849 * 109.25942 * 180.02562 * 16 15 14 18 18 C 1.34807 * 108.39314 * 0.24262 * 17 16 15 19 19 N 1.36437 * 125.84053 * 180.02562 * 15 14 13 20 20 H 0.96998 * 126.50185 * 0.02562 * 19 15 14 21 21 C 1.39593 * 119.83091 * 0.27533 * 14 13 12 22 22 C 1.37837 * 119.90677 * 359.44341 * 21 14 13 23 23 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47141 * 59.99764 * 9 7 2 25 25 H 1.09002 * 109.47168 * 300.00041 * 9 7 2 26 26 H 1.07995 * 119.96322 * 359.96197 * 12 11 10 27 27 H 1.07999 * 120.04672 * 180.02562 * 13 12 11 28 28 H 1.08002 * 125.79954 * 179.97438 * 17 16 15 29 29 H 1.07995 * 126.48402 * 179.75526 * 18 17 16 30 30 H 1.07998 * 120.04142 * 179.72457 * 21 14 13 31 31 H 1.08004 * 119.95070 * 180.25708 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5854 0.0005 11 6 1.6604 -4.8406 0.0000 12 6 2.5082 -5.9407 -0.0006 13 6 1.9851 -7.2160 -0.0006 14 6 0.6015 -7.4010 -0.0006 15 6 0.0364 -8.7672 -0.0012 16 7 0.7270 -9.8859 -0.0022 17 6 -0.1163 -10.9254 -0.0030 18 6 -1.3776 -10.4498 -0.0079 19 7 -1.2910 -9.0827 -0.0017 20 1 -2.0326 -8.4575 -0.0021 21 6 -0.2472 -6.2927 -0.0064 22 6 0.2835 -5.0206 -0.0005 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.5785 -5.7969 -0.0012 27 1 2.6448 -8.0711 -0.0006 28 1 0.1660 -11.9679 -0.0044 29 1 -2.2848 -11.0357 -0.0134 30 1 -1.3182 -6.4319 -0.0109 31 1 -0.3726 -4.1626 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242017607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:57 Heat of formation + Delta-G solvation = 35.183791 kcal Electronic energy + Delta-G solvation = -16010.485101 eV Core-core repulsion = 13257.809300 eV Total energy + Delta-G solvation = -2752.675801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.89330 -39.37020 -36.76970 -33.01198 -32.59786 -31.13223 -30.66989 -28.26212 -27.18959 -23.65634 -22.88304 -21.81070 -21.12699 -20.15031 -18.49636 -17.34578 -16.52333 -15.28288 -15.19878 -15.03537 -14.66271 -14.53154 -14.06692 -13.79053 -13.62992 -13.15222 -12.75556 -12.20409 -11.96416 -11.64279 -11.07753 -11.04954 -10.64721 -10.37847 -10.24022 -10.08550 -10.05793 -9.36218 -8.87540 -8.76398 -8.54208 -7.30119 -6.30286 -4.34281 1.21479 1.66733 2.32068 3.01224 3.22436 3.23297 3.26296 3.29518 4.08481 4.19778 4.38796 4.48277 4.91454 5.05379 5.07194 5.20153 5.31825 5.46854 5.60321 5.78681 5.99308 6.05950 6.27193 6.47557 6.61695 6.64807 6.78280 6.88824 7.06049 7.10726 7.29825 7.62158 7.88443 8.04475 8.36735 8.77338 9.31232 10.80873 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.067830 B = 0.003928 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.694956 B = 7126.848814 C = 7524.398241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.312 6.312 11 C 0.169 3.831 12 C -0.169 4.169 13 C -0.036 4.036 14 C -0.090 4.090 15 C 0.274 3.726 16 N -0.488 5.488 17 C -0.026 4.026 18 C -0.062 4.062 19 N -0.571 5.571 20 H 0.419 0.581 21 C -0.064 4.064 22 C -0.211 4.211 23 H 0.268 0.732 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.169 0.831 29 H 0.175 0.825 30 H 0.113 0.887 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 -16.028 -0.019 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.224 6.224 11 C 0.120 3.880 12 C -0.188 4.188 13 C -0.055 4.055 14 C -0.092 4.092 15 C 0.014 3.986 16 N -0.208 5.208 17 C -0.175 4.175 18 C -0.196 4.196 19 N -0.174 5.174 20 H 0.257 0.743 21 C -0.084 4.084 22 C -0.230 4.230 23 H 0.078 0.922 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.186 0.814 29 H 0.193 0.807 30 H 0.131 0.869 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.023 -15.944 -0.016 16.228 hybrid contribution -1.402 1.152 -0.004 1.815 sum -4.425 -14.792 -0.020 15.439 Atomic orbital electron populations 1.69935 1.06153 1.27805 1.49402 1.24937 0.95062 0.99580 0.94558 0.86282 0.79279 0.81276 0.79057 1.19798 1.20982 1.19794 1.20940 0.94315 0.88688 1.52506 0.91078 1.20707 0.88674 0.81753 0.97013 1.86139 1.39256 1.11826 1.85161 1.19470 0.91584 0.86674 0.90306 1.20420 1.00044 0.90021 1.08327 1.20847 0.93328 0.96489 0.94871 1.17325 0.93617 0.86629 1.11655 1.21444 0.79323 0.94207 1.03631 1.70438 1.33019 0.96880 1.20428 1.22314 0.88967 0.98725 1.07529 1.22744 1.01041 0.83013 1.12781 1.43491 1.08908 1.07741 1.57251 0.74291 1.20724 0.98262 0.91536 0.97919 1.21314 0.94982 0.98009 1.08727 0.92227 0.95891 0.95879 0.84886 0.84595 0.81378 0.80736 0.86868 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.53 -14.76 9.43 -34.44 -0.32 -15.09 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 4.94 4.49 36.00 0.16 5.10 16 10 O -0.31 -7.35 10.11 -19.26 -0.19 -7.55 16 11 C 0.17 3.35 6.69 -39.11 -0.26 3.08 16 12 C -0.17 -2.88 9.97 -39.49 -0.39 -3.27 16 13 C -0.04 -0.55 9.68 -39.22 -0.38 -0.93 16 14 C -0.09 -1.37 5.87 -104.95 -0.62 -1.99 16 15 C 0.27 3.94 7.77 -154.66 -1.20 2.74 16 16 N -0.49 -7.35 10.87 -11.22 -0.12 -7.47 16 17 C -0.03 -0.31 11.84 -17.89 -0.21 -0.52 16 18 C -0.06 -0.61 12.03 -16.47 -0.20 -0.80 16 19 N -0.57 -6.24 6.08 -10.54 -0.06 -6.30 16 20 H 0.42 3.39 8.08 -40.82 -0.33 3.06 16 21 C -0.06 -0.97 9.69 -39.22 -0.38 -1.35 16 22 C -0.21 -3.81 9.02 -39.49 -0.36 -4.17 16 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.02 0.61 7.65 -51.93 -0.40 0.22 16 25 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 26 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.14 1.94 7.83 -52.49 -0.41 1.53 16 28 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.11 1.32 7.17 -52.49 -0.38 0.95 16 31 H 0.14 2.59 6.28 -52.48 -0.33 2.26 16 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -31.26 278.12 -7.79 -39.05 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.05 Total: 2.44 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -4.26 Total: -15.62 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.55 Total: -38.44 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.19 Total: -7.55 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.26 -7.79 -39.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242017607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.237 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds