Wall clock time and date at job start Mon Mar 30 2020 18:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00080 * 2 1 4 4 H 1.48498 * 109.46754 * 239.99654 * 3 2 1 5 5 H 1.48497 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47589 * 119.99525 * 3 2 1 7 7 C 1.37883 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99616 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00135 * 0.02562 * 7 2 1 10 10 O 1.42902 * 109.47251 * 179.97438 * 9 7 2 11 11 C 1.35846 * 116.99884 * 180.02562 * 10 9 7 12 12 C 1.38882 * 119.90906 * 179.97438 * 11 10 9 13 13 C 1.37835 * 120.08134 * 179.97438 * 12 11 10 14 14 C 1.39595 * 119.91526 * 0.02562 * 13 12 11 15 15 C 1.47848 * 120.08478 * 179.97438 * 14 13 12 16 16 N 1.31475 * 125.84121 * 359.97438 * 15 14 13 17 17 C 1.33849 * 109.25942 * 180.02562 * 16 15 14 18 18 C 1.34807 * 108.39314 * 0.24262 * 17 16 15 19 19 N 1.36437 * 125.84053 * 180.02562 * 15 14 13 20 20 H 0.96998 * 126.50185 * 0.02562 * 19 15 14 21 21 C 1.39593 * 119.83091 * 0.27533 * 14 13 12 22 22 C 1.37837 * 119.90677 * 359.44341 * 21 14 13 23 23 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47141 * 59.99764 * 9 7 2 25 25 H 1.09002 * 109.47168 * 300.00041 * 9 7 2 26 26 H 1.07995 * 119.96322 * 359.96197 * 12 11 10 27 27 H 1.07999 * 120.04672 * 180.02562 * 13 12 11 28 28 H 1.08002 * 125.79954 * 179.97438 * 17 16 15 29 29 H 1.07995 * 126.48402 * 179.75526 * 18 17 16 30 30 H 1.07998 * 120.04142 * 179.72457 * 21 14 13 31 31 H 1.08004 * 119.95070 * 180.25708 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5854 0.0005 11 6 1.6604 -4.8406 0.0000 12 6 2.5082 -5.9407 -0.0006 13 6 1.9851 -7.2160 -0.0006 14 6 0.6015 -7.4010 -0.0006 15 6 0.0364 -8.7672 -0.0012 16 7 0.7270 -9.8859 -0.0022 17 6 -0.1163 -10.9254 -0.0030 18 6 -1.3776 -10.4498 -0.0079 19 7 -1.2910 -9.0827 -0.0017 20 1 -2.0326 -8.4575 -0.0021 21 6 -0.2472 -6.2927 -0.0064 22 6 0.2835 -5.0206 -0.0005 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.5785 -5.7969 -0.0012 27 1 2.6448 -8.0711 -0.0006 28 1 0.1660 -11.9679 -0.0044 29 1 -2.2848 -11.0357 -0.0134 30 1 -1.3182 -6.4319 -0.0109 31 1 -0.3726 -4.1626 -0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242017607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:57 Heat of formation + Delta-G solvation = 15.789093 kcal Electronic energy + Delta-G solvation = -16011.326119 eV Core-core repulsion = 13257.809300 eV Total energy + Delta-G solvation = -2753.516818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.095 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.83124 -40.86245 -38.30469 -35.08060 -33.57150 -32.40594 -31.96915 -29.94911 -28.59779 -25.48241 -24.08152 -23.27172 -22.13854 -21.26746 -19.59136 -18.98837 -18.42022 -16.97476 -16.51868 -16.40417 -16.19720 -15.93805 -15.29351 -14.87714 -14.62229 -14.45933 -14.27107 -13.72007 -13.64143 -13.14816 -12.86238 -12.85047 -12.31930 -12.08443 -11.89784 -11.36972 -11.06742 -11.04743 -10.73194 -10.07428 -9.92043 -8.57045 -8.39993 -6.53931 -0.01639 0.34317 1.33323 1.40023 1.44222 1.52571 2.15659 2.17796 2.26546 2.69861 2.90050 2.95335 3.38070 3.77748 3.93461 4.19271 4.24887 4.42424 4.49817 4.60852 4.72478 4.75420 4.96658 5.00018 5.02837 5.26609 5.34926 5.43103 5.52235 5.76278 5.82782 5.83862 6.45419 6.48993 6.76286 7.10362 7.17894 8.71826 Molecular weight = 244.10amu Principal moments of inertia in cm(-1) A = 0.067830 B = 0.003928 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.694956 B = 7126.848814 C = 7524.398241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.067 0.933 9 C 0.210 3.790 10 O -0.334 6.334 11 C 0.124 3.876 12 C -0.163 4.163 13 C -0.038 4.038 14 C -0.074 4.074 15 C 0.237 3.763 16 N -0.514 5.514 17 C -0.056 4.056 18 C -0.030 4.030 19 N -0.559 5.559 20 H 0.433 0.567 21 C -0.058 4.058 22 C -0.219 4.219 23 H 0.274 0.726 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.192 0.808 29 H 0.221 0.779 30 H 0.150 0.850 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -17.613 -0.025 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.598 4.598 8 H 0.085 0.915 9 C 0.136 3.864 10 O -0.247 6.247 11 C 0.076 3.924 12 C -0.182 4.182 13 C -0.058 4.058 14 C -0.076 4.076 15 C -0.023 4.023 16 N -0.234 5.234 17 C -0.205 4.205 18 C -0.165 4.165 19 N -0.164 5.164 20 H 0.274 0.726 21 C -0.078 4.078 22 C -0.238 4.238 23 H 0.083 0.917 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.161 0.839 27 H 0.168 0.832 28 H 0.209 0.791 29 H 0.238 0.762 30 H 0.167 0.833 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.008 -17.543 -0.022 17.995 hybrid contribution -1.217 1.309 -0.002 1.788 sum -5.226 -16.234 -0.024 17.054 Atomic orbital electron populations 1.70035 1.07656 1.29112 1.49424 1.25925 0.96020 1.03249 0.93426 0.85186 0.78109 0.76417 0.79466 1.18961 1.19809 1.18953 1.21310 0.94448 0.90252 1.53785 0.91524 1.20240 0.88433 0.82448 0.95245 1.86053 1.38908 1.12872 1.86890 1.19814 0.92989 0.85737 0.93841 1.20559 1.00396 0.89751 1.07484 1.21018 0.94066 0.96068 0.94632 1.17539 0.93549 0.87679 1.08824 1.21114 0.80816 0.93414 1.07005 1.70343 1.34794 0.97940 1.20339 1.22874 0.89585 0.99307 1.08723 1.23505 1.02042 0.82385 1.08542 1.43525 1.08214 1.08732 1.55891 0.72634 1.20960 1.00135 0.89983 0.96730 1.21289 0.94166 0.98972 1.09366 0.91697 0.97649 0.97639 0.83864 0.83197 0.79149 0.76206 0.83268 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.49 13.29 21.45 0.28 -53.20 16 2 C 0.01 0.76 5.46 84.66 0.46 1.22 16 3 Si 0.99 43.05 29.54 68.60 2.03 45.07 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.56 -32.60 9.43 25.60 0.24 -32.35 16 8 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 9 C 0.21 11.49 4.49 71.23 0.32 11.81 16 10 O -0.33 -16.69 10.11 -91.82 -0.93 -17.61 16 11 C 0.12 5.12 6.69 22.58 0.15 5.27 16 12 C -0.16 -5.67 9.97 22.33 0.22 -5.45 16 13 C -0.04 -1.17 9.68 22.50 0.22 -0.96 16 14 C -0.07 -2.17 5.87 -20.08 -0.12 -2.29 16 15 C 0.24 6.27 7.77 136.52 1.06 7.33 16 16 N -0.51 -14.41 10.87 -189.40 -2.06 -16.47 16 17 C -0.06 -1.15 11.84 83.60 0.99 -0.16 16 18 C -0.03 -0.45 12.03 83.10 1.00 0.55 16 19 N -0.56 -10.25 6.08 -187.25 -1.14 -11.38 16 20 H 0.43 5.33 8.08 -92.71 -0.75 4.58 16 21 C -0.06 -1.71 9.69 22.50 0.22 -1.49 16 22 C -0.22 -8.19 9.02 22.33 0.20 -7.99 16 23 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.01 0.32 7.65 -2.38 -0.02 0.31 16 25 H 0.01 0.33 7.66 -2.39 -0.02 0.31 16 26 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 27 H 0.15 4.16 7.83 -2.91 -0.02 4.14 16 28 H 0.19 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 30 H 0.15 3.16 7.17 -2.91 -0.02 3.13 16 31 H 0.12 4.92 6.28 -2.91 -0.02 4.90 16 Total: -1.00 -69.71 278.12 3.56 -66.15 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.41 Total: 11.95 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.97 Total: -24.51 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.91 Total: -81.06 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.93 Total: -17.61 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.71 3.56 -66.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242017607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.943 kcal (2) G-P(sol) polarization free energy of solvation -69.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds