Wall clock time and date at job start Mon Mar 30 2020 18:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 H 1.09005 * 109.47066 * 54.48025 * 3 2 1 5 5 C 1.50701 * 109.47452 * 174.48212 * 3 2 1 6 6 H 1.07991 * 120.00030 * 120.00096 * 5 3 2 7 7 C 1.37875 * 120.00008 * 299.99987 * 5 3 2 8 8 N 1.31506 * 120.00165 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99878 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47223 * 90.00084 * 9 7 5 11 11 H 1.48499 * 109.47260 * 209.99698 * 9 7 5 12 12 H 1.48505 * 109.47248 * 329.99991 * 9 7 5 13 13 N 1.46904 * 109.47015 * 294.48185 * 3 2 1 14 14 C 1.46902 * 110.99832 * 154.44137 * 13 3 2 15 15 C 1.50697 * 109.46911 * 174.76391 * 14 13 3 16 16 C 1.38385 * 119.92440 * 269.72701 * 15 14 13 17 17 C 1.38339 * 120.30553 * 179.76337 * 16 15 14 18 18 C 1.37970 * 120.15268 * 0.51726 * 17 16 15 19 19 C 1.39614 * 119.84212 * 359.73359 * 18 17 16 20 20 C 1.43196 * 120.14719 * 179.97438 * 19 18 17 21 21 N 8.37778 * 60.14594 * 317.62113 * 2 1 3 22 22 C 1.37931 * 119.92548 * 90.00287 * 15 14 13 23 23 H 1.08998 * 109.47221 * 306.02530 * 1 2 3 24 24 H 1.09003 * 109.46850 * 66.02630 * 1 2 3 25 25 H 1.08998 * 109.47175 * 186.02724 * 1 2 3 26 26 H 1.09001 * 109.47618 * 239.99906 * 2 1 3 27 27 H 1.09006 * 109.47355 * 120.00124 * 2 1 3 28 28 H 0.97006 * 120.00118 * 179.97438 * 8 7 5 29 29 H 1.00901 * 110.99450 * 30.49334 * 13 3 2 30 30 H 1.08997 * 109.47319 * 294.76175 * 14 13 3 31 31 H 1.09000 * 109.46810 * 54.76653 * 14 13 3 32 32 H 1.08005 * 119.84980 * 359.97438 * 16 15 14 33 33 H 1.08000 * 119.92563 * 180.25248 * 17 16 15 34 34 H 1.07999 * 120.07785 * 179.76787 * 18 17 16 35 35 H 1.07994 * 120.07105 * 359.95306 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 0.8365 5 6 3.5408 1.4447 0.1366 6 1 4.1527 1.8869 -0.6356 7 6 4.1328 0.8822 1.2475 8 7 5.4424 0.8836 1.3665 9 14 3.0744 0.1179 2.5836 10 1 2.8551 -1.3191 2.2800 11 1 3.7610 0.2477 3.8939 12 1 1.7656 0.8174 2.6392 13 7 1.6621 2.0955 -1.2605 14 6 1.5691 3.5518 -1.0917 15 6 1.3070 4.1966 -2.4283 16 6 2.3680 4.5941 -3.2228 17 6 2.1366 5.1824 -4.4533 18 6 0.8445 5.3865 -4.8919 19 6 -0.2307 4.9926 -4.0931 20 6 -1.5744 5.2018 -4.5416 21 7 -2.6404 5.3674 -4.8975 22 6 0.0102 4.3945 -2.8544 23 1 -0.3633 0.6044 0.8311 24 1 -0.3633 0.4176 -0.9390 25 1 -0.3633 -1.0220 0.1079 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.8589 0.4882 2.1483 29 1 0.7982 1.7170 -1.6188 30 1 0.7529 3.7869 -0.4086 31 1 2.5057 3.9307 -0.6828 32 1 3.3815 4.4413 -2.8823 33 1 2.9693 5.4866 -5.0702 34 1 0.6652 5.8493 -5.8511 35 1 -0.8169 4.0872 -2.2316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037749310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:38 Heat of formation + Delta-G solvation = 52.695596 kcal Electronic energy + Delta-G solvation = -16609.806747 eV Core-core repulsion = 13993.723410 eV Total energy + Delta-G solvation = -2616.083337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.55355 -36.91404 -36.31323 -33.26203 -31.99361 -31.29240 -30.24875 -27.29742 -24.76359 -23.84511 -22.52927 -21.43601 -19.92483 -18.26201 -16.81760 -16.27232 -15.62954 -15.24747 -14.73691 -14.25709 -14.16398 -13.95621 -13.23218 -13.16168 -13.08407 -12.79462 -12.61315 -12.37423 -12.11036 -11.80947 -11.67441 -11.33829 -11.19189 -10.87902 -10.48359 -10.32391 -10.03353 -9.47566 -9.28525 -8.97853 -8.77762 -8.55322 -7.47004 -6.07901 -4.05223 0.78393 1.30548 2.56963 2.92258 3.23198 3.33420 3.35853 3.80296 3.85173 4.37315 4.77217 4.82249 5.04868 5.18688 5.26125 5.31342 5.44410 5.64193 5.69885 5.77574 5.85688 5.92911 5.96345 6.21375 6.29377 6.34238 6.42732 6.56077 6.61516 6.72247 6.75913 6.83744 7.11584 7.38636 7.66749 7.86502 8.17384 8.69721 9.03593 9.55130 11.05328 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.031387 B = 0.005354 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.877087 B = 5228.632886 C = 5900.218192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C 0.189 3.811 4 H 0.002 0.998 5 C -0.497 4.497 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.669 5.669 14 C 0.099 3.901 15 C -0.066 4.066 16 C -0.062 4.062 17 C -0.123 4.123 18 C -0.078 4.078 19 C -0.040 4.040 20 C 0.262 3.738 21 N -0.432 5.432 22 C -0.069 4.069 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.263 0.737 29 H 0.320 0.680 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.877 6.562 -7.737 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.174 4.174 3 C 0.081 3.919 4 H 0.020 0.980 5 C -0.536 4.536 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.300 5.300 14 C -0.030 4.030 15 C -0.067 4.067 16 C -0.081 4.081 17 C -0.141 4.141 18 C -0.099 4.099 19 C -0.043 4.043 20 C -0.053 4.053 21 N -0.107 5.107 22 C -0.090 4.090 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.731 6.779 -8.389 13.877 hybrid contribution -0.889 -0.602 1.449 1.803 sum -9.621 6.177 -6.940 13.375 Atomic orbital electron populations 1.21921 0.98193 1.00666 1.00729 1.22122 0.92943 1.00372 1.01919 1.19653 0.97010 0.89315 0.85917 0.98035 1.21013 0.89001 1.37663 1.05902 0.90018 1.24949 0.94736 0.95927 0.97757 1.69875 1.08851 1.45750 1.29392 0.86965 0.80724 0.79841 0.81316 1.20586 1.22492 1.19320 1.60531 1.36497 1.01306 1.31668 1.20899 1.01730 0.89876 0.90539 1.20006 0.91986 0.97162 0.97533 1.21462 1.00032 0.93647 0.92967 1.21112 0.96283 0.99986 0.96692 1.21087 0.91693 0.98325 0.98795 1.15933 0.85356 1.06398 0.96633 1.25824 0.92851 0.93260 0.93317 1.81227 1.11556 1.09386 1.08553 1.21086 0.97351 0.96631 0.93927 0.93570 0.93126 0.93575 0.91237 0.92750 0.92689 0.86220 0.95331 0.88882 0.84568 0.85060 0.85498 0.85517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.64 37.16 0.36 -2.21 16 2 C -0.14 -2.76 5.01 -26.73 -0.13 -2.90 16 3 C 0.19 4.14 1.61 -68.86 -0.11 4.03 16 4 H 0.00 0.05 6.91 -51.93 -0.36 -0.31 16 5 C -0.50 -13.25 9.15 -34.44 -0.32 -13.57 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 8 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 9 Si 0.88 21.16 24.41 -169.99 -4.15 17.01 16 10 H -0.28 -6.56 6.82 56.52 0.39 -6.17 16 11 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.15 6.53 56.52 0.37 -5.78 16 13 N -0.67 -12.31 6.26 -109.22 -0.68 -12.99 16 14 C 0.10 1.57 5.58 -4.98 -0.03 1.54 16 15 C -0.07 -0.87 5.43 -104.68 -0.57 -1.43 16 16 C -0.06 -0.74 9.69 -39.49 -0.38 -1.13 16 17 C -0.12 -1.20 10.03 -39.64 -0.40 -1.60 16 18 C -0.08 -0.75 9.76 -39.17 -0.38 -1.13 16 19 C -0.04 -0.44 5.73 -106.93 -0.61 -1.05 16 20 C 0.26 3.24 15.33 -22.48 -0.34 2.89 16 21 N -0.43 -6.17 18.54 41.84 0.78 -5.39 16 22 C -0.07 -0.80 9.41 -39.17 -0.37 -1.17 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.72 6.66 -51.93 -0.35 0.38 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.05 1.20 3.22 -51.93 -0.17 1.03 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 29 H 0.32 5.26 6.64 -39.29 -0.26 5.00 16 30 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 31 H 0.09 1.64 7.88 -51.93 -0.41 1.23 16 32 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 297.84 15.07 4.49 4.49 Total: -1.00 -29.68 297.84 -6.71 -36.38 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.53 Total: 2.39 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -3.38 Total: -15.95 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.87 Total: -44.33 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.15 Total: 17.01 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.68 -6.71 -36.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037749310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.079 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds