Wall clock time and date at job start Mon Mar 30 2020 18:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47216 * 2 1 4 4 C 1.50696 * 109.47074 * 120.00540 * 2 1 3 5 5 H 1.08005 * 120.00364 * 118.10299 * 4 2 1 6 6 C 1.37876 * 119.99783 * 298.10344 * 4 2 1 7 7 N 1.31518 * 120.00297 * 7.01926 * 6 4 2 8 8 Si 1.86809 * 119.99896 * 187.01987 * 6 4 2 9 9 H 1.48498 * 109.46903 * 265.17613 * 8 6 4 10 10 H 1.48497 * 109.46983 * 145.17753 * 8 6 4 11 11 H 1.48500 * 109.46867 * 25.18095 * 8 6 4 12 12 C 1.53004 * 109.46674 * 240.00083 * 2 1 3 13 13 S 1.81404 * 109.47130 * 60.00466 * 12 2 1 14 14 C 1.81401 * 102.99734 * 179.97438 * 13 12 2 15 15 C 1.53003 * 109.46651 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.86975 * 58.99336 * 15 14 13 17 17 C 1.54105 * 109.87912 * 179.97438 * 15 14 13 18 18 C 1.54810 * 104.18657 * 121.45217 * 17 15 14 19 19 C 1.54992 * 102.09424 * 20.88223 * 18 17 15 20 20 O 1.43745 * 109.88182 * 297.83090 * 15 14 13 21 21 H 1.09000 * 109.46810 * 305.63344 * 1 2 3 22 22 H 1.08999 * 109.47030 * 65.63491 * 1 2 3 23 23 H 1.08998 * 109.47195 * 185.63628 * 1 2 3 24 24 H 1.09001 * 109.46962 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47668 * 300.00368 * 3 2 1 26 26 H 1.09002 * 109.46744 * 59.99891 * 3 2 1 27 27 H 0.96993 * 119.99734 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.46697 * 179.97438 * 12 2 1 29 29 H 1.08998 * 109.47260 * 299.99855 * 12 2 1 30 30 H 1.08991 * 109.46973 * 299.99309 * 14 13 12 31 31 H 1.08994 * 109.47454 * 60.00268 * 14 13 12 32 32 H 1.08997 * 110.48671 * 240.13164 * 17 15 14 33 33 H 1.09003 * 110.48060 * 2.77817 * 17 15 14 34 34 H 1.09000 * 110.90575 * 139.08095 * 18 17 15 35 35 H 1.08997 * 110.90751 * 262.65052 * 18 17 15 36 36 H 1.09006 * 110.61846 * 81.47245 * 19 18 17 37 37 H 1.08995 * 110.62128 * 204.31505 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6278 -1.6062 1.1316 6 6 1.7318 -0.2172 2.4823 7 7 0.8954 0.7898 2.6089 8 14 2.5127 -0.9791 3.9987 9 1 1.5971 -2.0010 4.5664 10 1 2.7630 0.0783 5.0108 11 1 3.7988 -1.6200 3.6240 12 6 2.0399 -0.7213 -1.2493 13 16 1.4353 0.1340 -2.7304 14 6 2.1331 -0.8516 -4.0841 15 6 1.7071 -0.2501 -5.4249 16 1 2.0537 0.7809 -5.4952 17 6 2.2956 -1.0802 -6.5822 18 6 1.0558 -1.5449 -7.3845 19 6 -0.0187 -0.5177 -6.9457 20 8 0.2758 -0.2973 -5.5492 21 1 -0.3633 0.5987 0.8353 22 1 -0.3633 0.4240 -0.9361 23 1 -0.3633 -1.0227 0.1009 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9564 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 0.6843 1.1371 3.4896 28 1 3.1300 -0.7209 -1.2496 29 1 1.6766 -1.7489 -1.2493 30 1 3.2206 -0.8479 -4.0130 31 1 1.7677 -1.8760 -4.0135 32 1 2.9430 -0.4622 -7.2043 33 1 2.8436 -1.9393 -6.1952 34 1 1.2401 -1.4809 -8.4569 35 1 0.7660 -2.5567 -7.1012 36 1 0.0833 0.4093 -7.5100 37 1 -1.0191 -0.9324 -7.0687 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563437648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:45 Heat of formation + Delta-G solvation = -79.361373 kcal Electronic energy + Delta-G solvation = -15844.612197 eV Core-core repulsion = 13325.953640 eV Total energy + Delta-G solvation = -2518.658557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.31370 -37.81506 -33.51114 -33.32821 -32.37563 -28.17450 -27.56378 -27.14944 -26.72633 -23.04976 -21.94706 -20.79098 -17.99344 -17.64094 -17.08489 -16.64245 -16.48631 -16.18021 -15.35920 -15.02997 -14.54503 -14.48564 -13.83924 -13.78952 -13.69539 -13.23657 -13.11448 -12.68376 -12.60429 -12.57511 -12.22008 -12.16356 -12.02858 -11.80159 -11.58483 -11.42524 -11.26497 -10.99430 -10.66310 -10.41515 -10.27230 -8.38313 -8.00665 -6.17541 0.89174 1.42760 1.44975 1.54499 1.91723 2.46769 2.98064 3.22023 3.62065 3.76332 3.98777 4.14353 4.15890 4.32633 4.39511 4.44094 4.60023 4.64917 4.77451 4.84412 4.92159 4.94961 4.96698 5.08020 5.10335 5.22007 5.25172 5.27087 5.46416 5.65715 5.67396 6.02272 6.08629 6.20856 6.41424 6.87501 7.49568 8.99015 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.057038 B = 0.004665 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.781401 B = 6000.441264 C = 6163.570030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.071 3.929 3 C -0.116 4.116 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.269 1.269 12 C -0.049 4.049 13 S -0.283 6.283 14 C -0.087 4.087 15 C 0.093 3.907 16 H 0.070 0.930 17 C -0.142 4.142 18 C -0.148 4.148 19 C 0.033 3.967 20 O -0.394 6.394 21 H 0.057 0.943 22 H 0.030 0.970 23 H 0.016 0.984 24 H 0.024 0.976 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -3.745 -18.900 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.070 3.930 3 C -0.174 4.174 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.776 3.224 9 H -0.206 1.206 10 H -0.209 1.209 11 H -0.194 1.194 12 C -0.197 4.197 13 S -0.055 6.055 14 C -0.236 4.236 15 C 0.034 3.966 16 H 0.088 0.912 17 C -0.181 4.181 18 C -0.185 4.185 19 C -0.043 4.043 20 O -0.314 6.314 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.936 -2.706 -18.656 18.950 hybrid contribution 1.082 -1.370 1.186 2.111 sum 3.018 -4.077 -17.470 18.192 Atomic orbital electron populations 1.21706 0.97787 0.98752 0.99226 1.17974 0.92720 0.92582 0.89726 1.21630 0.97978 0.98193 0.99621 1.21342 1.33165 1.10908 0.91269 0.93094 1.25589 0.95105 0.95615 1.01281 1.70009 1.33987 1.26670 1.23544 0.85670 0.79007 0.78074 0.79605 1.20562 1.20907 1.19406 1.23495 1.01517 1.00305 0.94350 1.87083 1.72170 1.44564 1.01710 1.23693 1.03394 1.01535 0.94931 1.22500 0.81905 0.99259 0.92956 0.91194 1.23021 0.98891 1.00611 0.95581 1.23123 0.94066 0.99576 1.01750 1.23794 1.00389 0.98634 0.81518 1.89043 1.21610 1.93828 1.26936 0.92383 0.95114 0.96468 0.95678 0.94940 0.92899 0.93130 0.91521 0.92149 0.87916 0.90174 0.88405 0.89503 0.87774 0.90631 0.91291 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.04 71.98 0.58 -5.45 16 2 C 0.07 3.60 0.52 -52.93 -0.03 3.57 16 3 C -0.12 -5.84 7.99 71.98 0.58 -5.26 16 4 C -0.53 -28.83 8.00 25.60 0.20 -28.63 16 5 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 6 C 0.02 1.30 5.12 84.65 0.43 1.73 16 7 N -0.90 -51.31 9.47 21.45 0.20 -51.11 16 8 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 C -0.05 -2.10 4.88 71.98 0.35 -1.75 16 13 S -0.28 -10.98 18.42 -56.49 -1.04 -12.02 16 14 C -0.09 -2.47 5.44 71.98 0.39 -2.07 16 15 C 0.09 2.24 3.45 30.97 0.11 2.35 16 16 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 17 C -0.14 -2.22 6.64 31.59 0.21 -2.01 16 18 C -0.15 -2.06 7.15 31.89 0.23 -1.83 16 19 C 0.03 0.61 7.72 72.66 0.56 1.17 16 20 O -0.39 -11.28 10.87 -148.98 -1.62 -12.90 16 21 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16 22 H 0.03 1.49 6.71 -2.39 -0.02 1.47 16 23 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.03 1.52 6.92 -2.39 -0.02 1.51 16 26 H 0.05 2.90 6.20 -2.39 -0.01 2.89 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.25 7.70 -2.39 -0.02 1.23 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -62.23 302.04 4.20 -58.04 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.01 Total: 10.75 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.61 Total: -38.16 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.20 Total: -51.11 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.62 Total: -12.90 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -10.98 SS G_CDS: -1.04 Total: -12.02 kcal Total: -62.23 4.20 -58.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563437648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.325 kcal (2) G-P(sol) polarization free energy of solvation -62.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds