Wall clock time and date at job start Mon Mar 30 2020 18:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.87259 * 2 1 4 4 O 1.43749 * 109.87804 * 121.00940 * 2 1 3 5 5 C 1.44376 * 106.97825 * 145.93849 * 4 2 1 6 6 C 1.54997 * 103.62951 * 319.85775 * 5 4 2 7 7 C 1.54099 * 109.88218 * 238.83591 * 2 1 3 8 8 H 1.08995 * 110.49309 * 119.86952 * 7 2 1 9 9 S 1.81405 * 110.48715 * 357.22542 * 7 2 1 10 10 C 1.81399 * 103.00228 * 174.99881 * 9 7 2 11 11 C 1.52999 * 109.47158 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47174 * 300.00226 * 11 10 9 13 13 C 1.53002 * 109.46902 * 59.99902 * 11 10 9 14 14 C 1.50696 * 109.47330 * 179.97438 * 11 10 9 15 15 H 1.08004 * 119.99737 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00220 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00095 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99993 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46909 * 60.00050 * 18 16 14 20 20 H 1.48498 * 109.46913 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46875 * 300.00081 * 18 16 14 22 22 H 1.09001 * 109.47401 * 300.45115 * 1 2 3 23 23 H 1.09002 * 109.46885 * 60.45053 * 1 2 3 24 24 H 1.08999 * 109.46992 * 180.44402 * 1 2 3 25 25 H 1.09002 * 110.62025 * 78.43911 * 5 4 2 26 26 H 1.09000 * 110.61614 * 201.27823 * 5 4 2 27 27 H 1.08997 * 110.90645 * 155.30251 * 6 5 4 28 28 H 1.08997 * 110.90760 * 278.90437 * 6 5 4 29 29 H 1.08995 * 109.47065 * 299.99975 * 10 9 7 30 30 H 1.08995 * 109.46919 * 59.99815 * 10 9 7 31 31 H 1.08993 * 109.47350 * 59.99711 * 12 11 10 32 32 H 1.09000 * 109.47059 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.46719 * 299.99663 * 12 11 10 34 34 H 1.08995 * 109.47162 * 60.00075 * 13 11 10 35 35 H 1.09000 * 109.46994 * 179.97438 * 13 11 10 36 36 H 1.08993 * 109.47146 * 299.99998 * 13 11 10 37 37 H 0.96999 * 120.00231 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6964 1.1586 5 6 3.2379 -1.3632 0.7666 6 6 2.9223 -1.8957 -0.6544 7 6 2.0540 -0.7499 -1.2400 8 1 2.6620 -0.0885 -1.8573 9 16 0.6738 -1.4280 -2.2023 10 6 1.4961 -2.1190 -3.6641 11 6 0.4499 -2.7403 -4.5917 12 6 -0.2923 -3.8538 -3.8500 13 6 -0.5476 -1.6653 -5.0280 14 6 1.1329 -3.3138 -5.8065 15 1 2.2059 -3.2426 -5.9066 16 6 0.3880 -3.9293 -6.7899 17 7 -0.9185 -4.0165 -6.6677 18 14 1.2348 -4.6409 -8.2954 19 1 2.2024 -5.6847 -7.8719 20 1 0.2194 -5.2438 -9.1957 21 1 1.9557 -3.5602 -9.0148 22 1 -0.3634 0.5208 0.8859 23 1 -0.3633 0.5068 -0.8940 24 1 -0.3633 -1.0276 0.0080 25 1 4.0685 -0.6580 0.7366 26 1 3.4598 -2.1871 1.4448 27 1 3.8370 -2.0287 -1.2319 28 1 2.3567 -2.8261 -0.6044 29 1 2.0252 -1.3258 -4.1923 30 1 2.2063 -2.8851 -3.3533 31 1 -0.7864 -3.4387 -2.9716 32 1 -1.0379 -4.2962 -4.5107 33 1 0.4183 -4.6197 -3.5392 34 1 -0.0188 -0.8720 -5.5564 35 1 -1.2926 -2.1078 -5.6892 36 1 -1.0416 -1.2501 -4.1496 37 1 -1.4427 -4.4492 -7.3598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581142316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:02:55 Heat of formation + Delta-G solvation = -76.201368 kcal Electronic energy + Delta-G solvation = -16281.262477 eV Core-core repulsion = 13762.740948 eV Total energy + Delta-G solvation = -2518.521529 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.124 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.36268 -37.81714 -33.53821 -33.37053 -32.46095 -28.08352 -27.55516 -27.15569 -26.70619 -23.13926 -22.16962 -20.79332 -17.96447 -17.67910 -17.21213 -16.68269 -16.58338 -15.90279 -15.34001 -14.98155 -14.71373 -14.23488 -14.07163 -13.55287 -13.37982 -13.20007 -13.16393 -12.83526 -12.66015 -12.51351 -12.26731 -12.21851 -12.05092 -11.93863 -11.84141 -11.41664 -11.21186 -10.96484 -10.66576 -10.39065 -10.22636 -8.38672 -8.00256 -6.18431 0.85941 1.43592 1.44180 1.51293 1.84166 2.46011 2.87876 3.22194 3.42471 3.77955 4.03117 4.11128 4.25856 4.35277 4.41012 4.42206 4.55633 4.69620 4.78905 4.81124 4.94279 4.96813 5.02864 5.07518 5.08956 5.25463 5.26147 5.34320 5.47135 5.66067 5.67433 5.90932 6.11670 6.22519 6.42488 6.87194 7.49336 8.98274 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.005711 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.192021 B = 4902.008035 C = 5221.275900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 H 0.093 0.907 4 O -0.390 6.390 5 C 0.051 3.949 6 C -0.149 4.149 7 C -0.104 4.104 8 H 0.102 0.898 9 S -0.237 6.237 10 C -0.063 4.063 11 C 0.074 3.926 12 C -0.118 4.118 13 C -0.119 4.119 14 C -0.526 4.526 15 H 0.049 0.951 16 C 0.024 3.976 17 N -0.904 5.904 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.033 0.967 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 6.649 11.803 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.111 0.889 4 O -0.310 6.310 5 C -0.026 4.026 6 C -0.188 4.188 7 C -0.233 4.233 8 H 0.120 0.880 9 S -0.007 6.007 10 C -0.211 4.211 11 C 0.072 3.928 12 C -0.176 4.176 13 C -0.177 4.177 14 C -0.566 4.566 15 H 0.067 0.933 16 C -0.176 4.176 17 N -0.543 5.543 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.294 6.592 12.140 14.795 hybrid contribution 1.681 -0.617 -1.709 2.475 sum 6.975 5.975 10.432 13.899 Atomic orbital electron populations 1.21807 0.93449 1.03073 1.02989 1.22556 0.95660 0.95404 0.82231 0.88923 1.88865 1.40832 1.68174 1.33162 1.23657 0.87271 0.97100 0.94560 1.23598 1.00205 0.97645 0.97360 1.24826 0.98498 1.00253 0.99721 0.88013 1.86988 1.16117 1.74879 1.22690 1.23582 1.00986 1.00817 0.95718 1.17933 0.91213 0.92156 0.91463 1.21671 0.99820 0.98449 0.97651 1.21683 0.99889 0.97070 0.99084 1.21343 0.93245 1.37333 1.04683 0.93277 1.25561 0.95399 0.96194 1.00429 1.69954 1.05659 1.44044 1.34598 0.85771 0.78274 0.78695 0.79805 1.19995 1.21071 1.19946 0.90568 0.90158 0.92450 0.90196 0.87426 0.88925 0.90812 0.92167 0.92112 0.94946 0.92523 0.96226 0.96086 0.92531 0.94788 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 8.29 71.98 0.60 -3.29 16 2 C 0.10 2.40 4.06 30.97 0.13 2.53 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 O -0.39 -9.92 11.19 -148.98 -1.67 -11.58 16 5 C 0.05 1.01 7.71 72.67 0.56 1.57 16 6 C -0.15 -3.51 6.72 32.04 0.22 -3.29 16 7 C -0.10 -2.73 3.55 31.73 0.11 -2.62 16 8 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 9 S -0.24 -8.19 14.86 -56.49 -0.84 -9.03 16 10 C -0.06 -2.57 4.84 71.98 0.35 -2.22 16 11 C 0.07 3.56 0.52 -52.93 -0.03 3.54 16 12 C -0.12 -5.76 8.01 71.98 0.58 -5.18 16 13 C -0.12 -5.79 8.01 71.98 0.58 -5.21 16 14 C -0.53 -28.08 8.01 25.60 0.21 -27.88 16 15 H 0.05 2.59 7.74 -2.91 -0.02 2.56 16 16 C 0.02 1.27 5.15 84.65 0.44 1.71 16 17 N -0.90 -50.28 9.35 21.45 0.20 -50.08 16 18 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.08 2.04 7.43 -2.39 -0.02 2.02 16 24 H 0.06 1.67 7.12 -2.39 -0.02 1.65 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 2.02 7.84 -2.39 -0.02 2.00 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.03 1.46 6.91 -2.39 -0.02 1.44 16 32 H 0.06 3.05 6.07 -2.39 -0.01 3.04 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 36 H 0.03 1.51 6.91 -2.39 -0.02 1.50 16 37 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -57.66 296.95 4.46 -53.20 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.02 Total: 13.10 kcal Atomic # 6 Polarization: -44.09 SS G_CDS: 3.73 Total: -40.36 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.20 Total: -50.08 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.67 Total: -11.58 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -0.84 Total: -9.03 kcal Total: -57.66 4.46 -53.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581142316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.003 kcal (2) G-P(sol) polarization free energy of solvation -57.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds