Wall clock time and date at job start Mon Mar 30 2020 18:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00104 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00175 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47227 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47480 * 120.00093 * 9 7 5 12 12 H 1.48498 * 109.47110 * 240.00391 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46501 * 109.47135 * 295.00335 * 13 2 1 15 15 C 1.39710 * 119.99683 * 179.97438 * 14 13 2 16 16 C 1.39032 * 120.00370 * 359.72802 * 15 14 13 17 17 C 1.38208 * 120.22961 * 179.72021 * 16 15 14 18 18 C 1.38017 * 120.23492 * 0.55228 * 17 16 15 19 19 C 1.39636 * 119.99508 * 359.72595 * 18 17 16 20 20 C 1.43197 * 120.11343 * 179.97438 * 19 18 17 21 21 N 8.28488 * 88.59517 * 82.14059 * 2 1 3 22 22 C 1.38626 * 119.99876 * 179.97438 * 15 14 13 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 27 27 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 28 28 H 0.97004 * 120.00016 * 180.02562 * 8 7 5 29 29 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 30 30 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 31 31 H 0.96997 * 120.00359 * 0.02562 * 14 13 2 32 32 H 1.08003 * 119.88060 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.88176 * 180.27835 * 17 16 15 34 34 H 1.07991 * 120.00261 * 179.74969 * 18 17 16 35 35 H 1.08004 * 120.11032 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6748 -1.5198 -3.8512 9 14 1.4989 0.5628 -5.2496 10 1 0.7424 1.7743 -4.8435 11 1 2.7172 0.9666 -5.9965 12 1 0.6442 -0.2857 -6.1183 13 6 2.0400 -0.7212 1.2493 14 7 1.6524 0.0355 2.4424 15 6 2.0082 -0.4299 3.7107 16 6 2.7251 -1.6140 3.8410 17 6 3.0845 -2.0757 5.0931 18 6 2.7243 -1.3705 6.2236 19 6 1.9992 -0.1832 6.1043 20 6 1.6238 0.5502 7.2755 21 7 1.3269 1.1326 8.2046 22 6 1.6419 0.2863 4.8397 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 3.1263 -0.7994 -1.2055 27 1 1.6054 -1.7198 -1.2951 28 1 2.9221 -1.8428 -4.7318 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 1.1482 0.8591 2.3518 32 1 3.0057 -2.1727 2.9604 33 1 3.6453 -2.9938 5.1876 34 1 3.0036 -1.7368 7.2004 35 1 1.0818 1.2045 4.7408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602427181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:30 Heat of formation + Delta-G solvation = 34.065753 kcal Electronic energy + Delta-G solvation = -16086.947173 eV Core-core repulsion = 13470.055985 eV Total energy + Delta-G solvation = -2616.891188 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68773 -37.18703 -36.24437 -34.07674 -32.17343 -31.34201 -29.23800 -26.93676 -25.93245 -23.95157 -22.76184 -22.05961 -19.39234 -18.67718 -16.67088 -16.29740 -16.03927 -15.40654 -14.74093 -14.53740 -14.10814 -14.00647 -13.88457 -13.23911 -13.08406 -12.79900 -12.70675 -12.40631 -11.97169 -11.70036 -11.54794 -11.31349 -10.97555 -10.96074 -10.45490 -10.43462 -10.16694 -9.81240 -9.38506 -9.10549 -9.04578 -8.42978 -7.41134 -6.07484 -4.09400 0.74789 1.45973 2.52823 2.92613 3.26147 3.34388 3.37166 3.48672 3.87754 3.88083 4.40166 4.78251 5.03050 5.12464 5.28705 5.32543 5.42602 5.53420 5.58527 5.75195 5.83810 6.08123 6.14233 6.22898 6.27606 6.33903 6.38150 6.60549 6.77636 6.92378 6.97000 7.33764 7.38365 7.55349 7.68225 7.80123 7.90985 8.33090 8.96501 9.54890 11.03898 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.051732 B = 0.003626 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.126195 B = 7719.527181 C = 8121.172015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 H 0.063 0.937 4 C 0.030 3.970 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.124 3.876 14 N -0.737 5.737 15 C 0.225 3.775 16 C -0.170 4.170 17 C -0.071 4.071 18 C -0.141 4.141 19 C 0.013 3.987 20 C 0.262 3.738 21 N -0.430 5.430 22 C -0.158 4.158 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -0.662 14.743 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.008 4.008 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.000 4.000 14 N -0.364 5.364 15 C 0.118 3.882 16 C -0.194 4.194 17 C -0.089 4.089 18 C -0.164 4.164 19 C 0.009 3.991 20 C -0.053 4.053 21 N -0.105 5.105 22 C -0.183 4.183 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.570 0.014 15.851 15.861 hybrid contribution -0.293 0.541 -1.401 1.531 sum -0.863 0.555 14.450 14.486 Atomic orbital electron populations 1.21731 0.95859 1.01162 1.00257 1.21448 0.95694 0.99872 0.94535 0.91890 1.19083 0.96283 0.95561 0.89828 1.21221 1.35021 1.08377 0.90893 0.92498 1.25011 0.95204 0.95065 0.99162 1.69964 1.38842 1.21103 1.23474 0.86562 0.78305 0.80094 0.83206 1.19768 1.21025 1.21037 1.21703 0.99271 0.95246 0.83755 1.45086 1.60755 1.28080 1.02475 1.17708 0.92520 0.92442 0.85499 1.20992 1.02965 0.96822 0.98589 1.20813 0.97772 0.99038 0.91322 1.20814 1.01539 0.94785 0.99234 1.15650 1.01720 0.94828 0.86905 1.25853 0.93299 0.93141 0.92978 1.81228 1.09110 1.09241 1.10932 1.20498 1.06116 1.01881 0.89829 0.93405 0.91721 0.95082 0.96405 0.96264 0.93007 0.92306 0.92230 0.76479 0.85111 0.85235 0.85769 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.88 37.16 0.33 -1.88 16 2 C -0.10 -1.72 2.37 -90.63 -0.22 -1.93 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.52 -13.61 8.41 -34.44 -0.29 -13.90 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.12 1.80 4.30 -4.04 -0.02 1.78 16 14 N -0.74 -9.04 5.46 -58.67 -0.32 -9.36 16 15 C 0.22 2.57 6.65 -83.83 -0.56 2.02 16 16 C -0.17 -1.82 9.31 -39.30 -0.37 -2.19 16 17 C -0.07 -0.63 10.02 -39.67 -0.40 -1.03 16 18 C -0.14 -1.28 9.75 -39.14 -0.38 -1.66 16 19 C 0.01 0.13 5.73 -106.96 -0.61 -0.48 16 20 C 0.26 3.06 15.33 -22.47 -0.34 2.72 16 21 N -0.43 -5.87 18.54 41.84 0.78 -5.10 16 22 C -0.16 -1.66 9.60 -38.95 -0.37 -2.04 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.19 6.95 -51.93 -0.36 0.83 16 25 H 0.03 0.42 7.18 -51.93 -0.37 0.05 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.06 0.86 7.93 -51.93 -0.41 0.44 16 30 H 0.06 0.88 7.96 -51.93 -0.41 0.47 16 31 H 0.40 4.53 7.66 -40.82 -0.31 4.22 16 32 H 0.13 1.38 6.71 -52.48 -0.35 1.03 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -28.81 304.89 -7.37 -36.18 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.69 Total: -0.57 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -3.45 Total: -16.56 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 1.19 Total: -39.48 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.81 -7.37 -36.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602427181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.241 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds