Wall clock time and date at job start Mon Mar 30 2020 18:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99756 * 2 1 4 4 C 1.52998 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47642 * 295.96950 * 4 3 2 6 6 O 1.42898 * 109.47406 * 55.97443 * 4 3 2 7 7 C 1.50701 * 109.46989 * 175.97383 * 4 3 2 8 8 O 1.20833 * 120.00006 * 245.89094 * 7 4 3 9 9 O 1.34235 * 120.00091 * 65.88454 * 7 4 3 10 10 C 1.45203 * 116.99771 * 185.09868 * 9 7 4 11 11 C 1.52997 * 109.46901 * 184.78384 * 10 9 7 12 12 C 1.50701 * 115.54973 * 294.77407 * 11 10 9 13 13 H 1.08008 * 120.00092 * 95.68034 * 12 11 10 14 14 C 1.37879 * 120.00385 * 275.40377 * 12 11 10 15 15 N 1.31510 * 119.99584 * 355.53164 * 14 12 11 16 16 Si 1.86796 * 120.00027 * 175.52932 * 14 12 11 17 17 H 1.48503 * 109.46858 * 60.00593 * 16 14 12 18 18 H 1.48503 * 109.46833 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47480 * 300.00332 * 16 14 12 20 20 C 1.52998 * 117.49939 * 80.44463 * 11 10 9 21 21 C 1.53001 * 117.50265 * 149.10447 * 11 10 9 22 22 H 1.09005 * 109.47041 * 300.00047 * 1 2 3 23 23 H 1.08997 * 109.47391 * 59.99920 * 1 2 3 24 24 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47116 * 60.00649 * 3 2 1 26 26 H 1.08998 * 109.47084 * 300.00298 * 3 2 1 27 27 H 0.96692 * 113.99938 * 59.99384 * 6 4 3 28 28 H 1.08998 * 109.46753 * 64.78750 * 10 9 7 29 29 H 1.09003 * 109.47354 * 304.78206 * 10 9 7 30 30 H 0.97006 * 120.00083 * 185.00043 * 15 14 12 31 31 H 1.09002 * 117.50055 * 215.00566 * 20 11 10 32 32 H 1.08999 * 117.49966 * 0.02562 * 20 11 10 33 33 H 1.09007 * 117.49332 * 359.97438 * 21 11 10 34 34 H 1.08999 * 117.50248 * 144.97042 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8625 0.7073 0.9230 6 8 3.9503 0.3958 -1.1175 7 6 4.1480 2.5580 -0.1004 8 8 4.7784 2.8683 -1.0834 9 8 3.9932 3.4365 0.9027 10 6 4.5118 4.7762 0.6915 11 6 4.3523 5.5930 1.9753 12 6 2.9323 5.8625 2.4020 13 1 2.4556 5.2207 3.1282 14 6 2.2435 6.9317 1.8697 15 7 2.8525 7.7673 1.0571 16 14 0.4453 7.1932 2.3025 17 1 0.3109 7.3749 3.7703 18 1 -0.0608 8.4027 1.6052 19 1 -0.3438 6.0099 1.8759 20 6 5.3942 5.3884 3.0768 21 6 5.3922 6.6798 2.2551 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8465 -0.8899 27 1 3.6926 0.7615 -1.9747 28 1 3.9590 5.2566 -0.1158 29 1 5.5674 4.7196 0.4257 30 1 2.3905 8.5591 0.7400 31 1 5.0526 5.4486 4.1102 32 1 6.1935 4.6722 2.8868 33 1 6.1904 6.8125 1.5246 34 1 5.0493 7.5898 2.7473 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849750415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:55 Heat of formation + Delta-G solvation = -158.707383 kcal Electronic energy + Delta-G solvation = -18063.489117 eV Core-core repulsion = 14962.803893 eV Total energy + Delta-G solvation = -3100.685224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.119 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21851 -38.18547 -37.04303 -36.12242 -35.24918 -32.02415 -30.51110 -27.30283 -26.35915 -25.29600 -23.72467 -21.25679 -20.64110 -19.35210 -17.89506 -17.19817 -16.56174 -16.22580 -16.13996 -15.53308 -15.30400 -14.69453 -14.33922 -14.06624 -13.70098 -13.15493 -12.46243 -12.33481 -12.26418 -11.77087 -11.71655 -11.47817 -11.01487 -10.97754 -10.69833 -10.61205 -10.32002 -10.01934 -9.96838 -9.79231 -9.51959 -8.98006 -8.52448 -8.27032 -6.12208 -4.19991 2.37877 2.99804 3.23313 3.29121 3.30853 3.69433 4.31568 4.37589 4.75684 4.88625 5.03062 5.15387 5.25453 5.28388 5.37992 5.48811 5.56988 5.65937 5.89074 6.16327 6.23309 6.43497 6.57069 6.69094 6.95705 6.99359 7.05544 7.27798 7.42497 7.45904 7.79535 8.16528 8.32508 8.81792 9.45905 10.95549 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.019163 B = 0.007508 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.829884 B = 3728.660835 C = 4731.092547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.035 3.965 4 C 0.124 3.876 5 H 0.142 0.858 6 O -0.527 6.527 7 C 0.428 3.572 8 O -0.511 6.511 9 O -0.333 6.333 10 C 0.114 3.886 11 C 0.032 3.968 12 C -0.490 4.490 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.882 5.882 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.205 4.205 21 C -0.139 4.139 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.382 0.618 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -10.217 -1.670 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.043 4.043 4 C 0.063 3.937 5 H 0.159 0.841 6 O -0.332 6.332 7 C 0.269 3.731 8 O -0.401 6.401 9 O -0.248 6.248 10 C 0.041 3.959 11 C 0.031 3.969 12 C -0.528 4.528 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.519 5.519 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.243 4.243 21 C -0.176 4.176 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.231 0.769 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.072 -10.471 -1.637 10.799 hybrid contribution -1.302 1.080 -0.371 1.731 sum -3.373 -9.391 -2.008 10.179 Atomic orbital electron populations 1.22787 0.80703 1.02745 1.00399 1.87893 1.19822 1.26607 1.95548 1.23088 0.92416 0.85775 1.02995 1.21379 0.92153 0.86888 0.93271 0.84102 1.86634 1.81428 1.48642 1.16476 1.24313 0.78744 0.88218 0.81778 1.90643 1.38597 1.78526 1.32302 1.86555 1.72951 1.23729 1.41537 1.22981 0.95925 0.76214 1.00749 1.18788 0.92130 0.95846 0.90088 1.20362 0.95085 1.12712 1.24591 0.91896 1.25026 0.98136 0.95885 0.94444 1.69974 1.37277 1.12119 1.32524 0.86648 0.85089 0.77584 0.78656 1.20112 1.21251 1.20136 1.23011 1.02958 1.00628 0.97669 1.22529 1.00364 0.93131 1.01592 0.93640 0.94010 0.89478 0.89969 0.92381 0.76886 0.90897 0.93825 0.92766 0.90014 0.91557 0.91735 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.04 10.52 -47.80 -0.50 -5.54 16 3 C 0.03 0.47 5.60 37.16 0.21 0.67 16 4 C 0.12 1.81 3.82 -27.88 -0.11 1.71 16 5 H 0.14 1.87 8.14 -51.93 -0.42 1.44 16 6 O -0.53 -7.62 12.82 -62.22 -0.80 -8.42 16 7 C 0.43 7.85 7.26 36.01 0.26 8.12 16 8 O -0.51 -10.54 15.98 -25.46 -0.41 -10.94 16 9 O -0.33 -6.93 10.16 -39.27 -0.40 -7.33 16 10 C 0.11 2.63 5.38 37.16 0.20 2.83 16 11 C 0.03 0.78 1.68 -155.66 -0.26 0.51 16 12 C -0.49 -12.94 8.77 -34.44 -0.30 -13.24 16 13 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 14 C 0.07 1.81 5.43 -17.82 -0.10 1.71 16 15 N -0.88 -24.24 12.67 55.43 0.70 -23.54 16 16 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.21 -4.41 9.96 -26.70 -0.27 -4.68 16 21 C -0.14 -3.18 9.17 -26.69 -0.24 -3.42 16 22 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.38 4.55 8.78 45.56 0.40 4.95 16 28 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 29 H 0.04 0.96 7.92 -51.93 -0.41 0.55 16 30 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 31 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.09 2.21 8.14 -51.93 -0.42 1.78 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -30.05 303.51 -5.55 -35.60 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.21 Total: 4.59 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 0.50 Total: -4.37 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.70 Total: -23.54 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -2.11 Total: -32.23 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.05 -5.55 -35.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849750415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.105 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds