Wall clock time and date at job start Mon Mar 30 2020 18:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99618 * 2 1 4 4 C 1.53005 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46924 * 54.99681 * 4 3 2 6 6 O 1.42895 * 109.46901 * 295.00179 * 4 3 2 7 7 C 1.50698 * 109.47170 * 174.99891 * 4 3 2 8 8 O 1.20830 * 119.99817 * 115.00029 * 7 4 3 9 9 O 1.34228 * 120.00279 * 295.00062 * 7 4 3 10 10 C 1.45201 * 116.99901 * 180.02562 * 9 7 4 11 11 C 1.53001 * 109.46744 * 184.73825 * 10 9 7 12 12 C 1.50697 * 115.55287 * 301.70631 * 11 10 9 13 13 H 1.07999 * 120.00203 * 95.21618 * 12 11 10 14 14 C 1.37879 * 120.00048 * 275.21395 * 12 11 10 15 15 N 1.31520 * 119.99609 * 7.12602 * 14 12 11 16 16 Si 1.86801 * 120.00071 * 187.12678 * 14 12 11 17 17 H 1.48500 * 109.47040 * 270.00009 * 16 14 12 18 18 H 1.48500 * 109.46987 * 30.00180 * 16 14 12 19 19 H 1.48501 * 109.47086 * 149.99795 * 16 14 12 20 20 C 1.53003 * 117.49447 * 87.37744 * 11 10 9 21 21 C 1.52996 * 117.49618 * 156.03421 * 11 10 9 22 22 H 1.08998 * 109.47747 * 299.99711 * 1 2 3 23 23 H 1.08998 * 109.47473 * 60.00192 * 1 2 3 24 24 H 1.09005 * 109.47115 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47711 * 60.00473 * 3 2 1 26 26 H 1.08998 * 109.47220 * 299.99853 * 3 2 1 27 27 H 0.96705 * 114.00631 * 299.99605 * 6 4 3 28 28 H 1.08995 * 109.47316 * 64.74442 * 10 9 7 29 29 H 1.08997 * 109.46974 * 304.73544 * 10 9 7 30 30 H 0.97000 * 120.00212 * 355.39630 * 15 14 12 31 31 H 1.09007 * 117.49737 * 214.99933 * 20 11 10 32 32 H 1.08995 * 117.50352 * 0.02562 * 20 11 10 33 33 H 1.09008 * 117.50254 * 359.97438 * 21 11 10 34 34 H 1.09001 * 117.50269 * 144.97762 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5686 -0.8427 6 8 3.9657 0.5793 1.2201 7 6 4.1478 2.5561 -0.1245 8 8 4.8043 3.0088 0.7833 9 8 3.9640 3.2747 -1.2432 10 6 4.5836 4.5869 -1.2930 11 6 4.1695 5.2978 -2.5830 12 6 4.5170 4.5794 -3.8614 13 1 3.7848 3.9474 -4.3419 14 6 5.7697 4.7291 -4.4177 15 7 6.7054 5.3829 -3.7644 16 14 6.1378 4.0034 -6.0991 17 1 6.6467 2.6175 -5.9394 18 1 4.8955 3.9840 -6.9126 19 1 7.1637 4.8319 -6.7820 20 6 2.8714 6.1073 -2.5580 21 6 4.2220 6.8268 -2.5951 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 0.8900 26 1 1.6885 1.8463 -0.8900 27 1 3.7191 1.0746 2.0132 28 1 5.6679 4.4779 -1.2704 29 1 4.2595 5.1746 -0.4342 30 1 6.4962 5.8167 -2.9224 31 1 2.2688 6.1204 -3.4662 32 1 2.3128 6.1339 -1.6224 33 1 4.5513 7.3264 -1.6839 34 1 4.5083 7.3132 -3.5276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849750416.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:03:57 Heat of formation + Delta-G solvation = -162.654853 kcal Electronic energy + Delta-G solvation = -18056.071417 eV Core-core repulsion = 14955.215018 eV Total energy + Delta-G solvation = -3100.856399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.119 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.30292 -38.28208 -37.26273 -36.30612 -35.37498 -31.96370 -30.59147 -27.38294 -26.36890 -24.88844 -23.85342 -21.49083 -20.76380 -19.62934 -17.98777 -17.33610 -16.68647 -16.53097 -16.24758 -15.85538 -15.34763 -14.41435 -14.27407 -13.84551 -13.76767 -13.29183 -12.71542 -12.41368 -12.33321 -12.13116 -11.82520 -11.55953 -11.03536 -10.84810 -10.74712 -10.59693 -10.17666 -10.14707 -10.03119 -9.88867 -9.63929 -8.64578 -8.55840 -8.40335 -6.42218 -4.16109 2.34068 2.86140 3.41042 3.43683 3.59527 3.65793 4.26232 4.46516 4.65898 4.80780 4.85464 5.14841 5.17287 5.19425 5.25232 5.36329 5.48949 5.58377 5.68038 5.95045 6.01264 6.18950 6.32098 6.45648 6.71050 6.87470 6.87876 7.08508 7.14490 7.37380 8.06249 8.17309 8.36997 8.79226 9.57759 10.96799 Molecular weight = 244.12amu Principal moments of inertia in cm(-1) A = 0.022531 B = 0.006221 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.443723 B = 4499.555585 C = 4675.953471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.037 3.963 4 C 0.123 3.877 5 H 0.146 0.854 6 O -0.526 6.526 7 C 0.428 3.572 8 O -0.511 6.511 9 O -0.325 6.325 10 C 0.110 3.890 11 C 0.013 3.987 12 C -0.566 4.566 13 H 0.057 0.943 14 C 0.025 3.975 15 N -0.905 5.905 16 Si 1.070 2.930 17 H -0.287 1.287 18 H -0.287 1.287 19 H -0.284 1.284 20 C -0.191 4.191 21 C -0.168 4.168 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.381 0.619 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.272 0.728 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 -5.898 6.586 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C -0.040 4.040 4 C 0.062 3.938 5 H 0.164 0.836 6 O -0.331 6.331 7 C 0.270 3.730 8 O -0.401 6.401 9 O -0.240 6.240 10 C 0.037 3.963 11 C 0.013 3.987 12 C -0.603 4.603 13 H 0.075 0.925 14 C -0.180 4.180 15 N -0.539 5.539 16 Si 0.898 3.102 17 H -0.213 1.213 18 H -0.213 1.213 19 H -0.210 1.210 20 C -0.228 4.228 21 C -0.205 4.205 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.230 0.770 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.891 -6.540 5.301 12.244 hybrid contribution -1.535 1.099 1.647 2.505 sum -10.426 -5.441 6.948 13.660 Atomic orbital electron populations 1.22787 0.80685 1.02919 1.00213 1.87916 1.19866 1.26536 1.95484 1.23094 0.92534 0.85943 1.02446 1.21390 0.91938 0.89559 0.90887 0.83627 1.86675 1.81430 1.50180 1.14780 1.24328 0.79182 0.88230 0.81293 1.90644 1.37935 1.70747 1.40757 1.86563 1.68357 1.31244 1.37838 1.22960 0.97313 0.78346 0.97723 1.19070 0.96692 0.89398 0.93558 1.21219 1.01663 1.31281 1.06150 0.92452 1.25854 0.92225 0.96199 1.03732 1.70745 1.33957 1.32118 1.17129 0.83521 0.75646 0.76245 0.74738 1.21346 1.21337 1.20955 1.22920 0.91201 1.08109 1.00550 1.22798 1.00403 0.96085 1.01263 0.94087 0.93661 0.89375 0.92496 0.90282 0.77044 0.91273 0.93903 0.91641 0.89667 0.91382 0.91224 0.89054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.83 10.67 -40.09 -0.43 -5.26 16 3 C 0.04 0.46 5.55 37.16 0.21 0.67 16 4 C 0.12 1.82 3.77 -27.88 -0.11 1.72 16 5 H 0.15 2.10 8.14 -51.93 -0.42 1.68 16 6 O -0.53 -7.64 12.96 -59.73 -0.77 -8.41 16 7 C 0.43 7.95 7.27 36.00 0.26 8.21 16 8 O -0.51 -10.59 16.01 -25.47 -0.41 -11.00 16 9 O -0.33 -6.91 10.00 -39.25 -0.39 -7.30 16 10 C 0.11 2.52 5.30 37.16 0.20 2.71 16 11 C 0.01 0.32 1.20 -155.66 -0.19 0.14 16 12 C -0.57 -15.32 8.64 -34.44 -0.30 -15.61 16 13 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 14 C 0.03 0.70 5.39 -17.82 -0.10 0.60 16 15 N -0.90 -26.32 13.57 55.43 0.75 -25.56 16 16 Si 1.07 24.62 29.91 -169.99 -5.08 19.54 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 C -0.19 -3.98 9.94 -26.69 -0.27 -4.24 16 21 C -0.17 -3.71 8.75 -26.70 -0.23 -3.95 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 27 H 0.38 4.34 8.79 45.56 0.40 4.74 16 28 H 0.07 1.74 7.76 -51.93 -0.40 1.34 16 29 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 30 H 0.27 7.83 6.15 -40.82 -0.25 7.58 16 31 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 34 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -31.83 301.19 -5.30 -37.13 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.10 Total: 4.68 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 0.59 Total: -8.36 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.75 Total: -25.56 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -2.00 Total: -31.96 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.54 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.83 -5.30 -37.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849750416.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.521 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds