Wall clock time and date at job start Mon Mar 30 2020 18:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47579 * 2 1 4 4 C 1.50702 * 109.46837 * 119.99981 * 2 1 3 5 5 H 1.08002 * 120.00104 * 120.00024 * 4 2 1 6 6 C 1.37881 * 119.99913 * 299.99828 * 4 2 1 7 7 N 1.31516 * 120.00013 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 119.99818 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47234 * 90.00481 * 8 6 4 10 10 H 1.48509 * 109.47179 * 210.00183 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00130 * 8 6 4 12 12 N 1.46495 * 109.47193 * 239.99650 * 2 1 3 13 13 C 1.46507 * 119.99794 * 300.00232 * 12 2 1 14 14 C 1.34773 * 120.00421 * 120.00495 * 12 2 1 15 15 O 1.21288 * 119.99758 * 359.97438 * 14 12 2 16 16 C 1.50693 * 120.00533 * 180.02562 * 14 12 2 17 17 F 1.39904 * 110.76842 * 56.74190 * 16 14 12 18 18 C 1.55398 * 110.84773 * 180.02562 * 16 14 12 19 19 C 1.54916 * 101.74107 * 153.86113 * 18 16 14 20 20 N 1.47843 * 104.79337 * 323.02060 * 19 18 16 21 21 C 1.47439 * 108.57210 * 24.09642 * 20 19 18 22 22 H 1.09002 * 109.46856 * 60.00219 * 1 2 3 23 23 H 1.09000 * 109.47579 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47291 * 300.00439 * 1 2 3 25 25 H 0.97000 * 120.00009 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.47140 * 269.99765 * 13 12 2 27 27 H 1.09001 * 109.47287 * 30.00453 * 13 12 2 28 28 H 1.09005 * 109.46942 * 149.99942 * 13 12 2 29 29 H 1.08995 * 110.87020 * 35.77769 * 18 16 14 30 30 H 1.08997 * 111.05714 * 272.03001 * 18 16 14 31 31 H 1.08996 * 110.37177 * 204.18825 * 19 18 16 32 32 H 1.09002 * 110.37261 * 81.84838 * 19 18 16 33 33 H 1.00906 * 110.99735 * 261.82181 * 20 19 18 34 34 H 1.09002 * 109.88998 * 118.41597 * 21 20 19 35 35 H 1.09003 * 109.88733 * 239.44258 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1378 -0.8590 3.5566 8 14 0.6259 1.2799 2.6540 9 1 -0.8020 0.8747 2.6992 10 1 0.9772 1.9956 3.9070 11 1 0.8492 2.1773 1.4922 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4278 14 6 2.7932 -0.0358 -2.0833 15 8 3.0859 1.1255 -1.8916 16 6 3.2951 -0.7461 -3.3139 17 9 2.2288 -1.2614 -4.0588 18 6 4.1647 0.2031 -4.1843 19 6 5.0816 -0.8012 -4.9263 20 7 5.3686 -1.8565 -3.9314 21 6 4.2850 -1.8666 -2.9317 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9038 -0.5273 4.4376 26 1 2.4156 -2.7378 -0.9715 27 1 0.6902 -2.3002 -0.9845 28 1 1.6237 -2.2854 -2.5000 29 1 4.7497 0.8769 -3.5583 30 1 3.5490 0.7631 -4.8880 31 1 6.0047 -0.3129 -5.2387 32 1 4.5639 -1.2227 -5.7879 33 1 6.2645 -1.7053 -3.4922 34 1 3.7769 -2.8308 -2.9453 35 1 4.6942 -1.6772 -1.9393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877145556.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:07 Heat of formation + Delta-G solvation = -65.033530 kcal Electronic energy + Delta-G solvation = -18896.185249 eV Core-core repulsion = 15844.227569 eV Total energy + Delta-G solvation = -3051.957680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.89212 -39.53796 -37.54270 -35.68925 -32.87002 -30.83659 -29.85558 -28.77054 -26.40838 -25.19987 -23.10479 -21.88392 -20.53444 -18.88692 -17.33673 -16.76851 -16.46676 -16.17312 -15.53747 -15.19679 -14.56867 -14.15687 -13.91844 -13.47635 -13.39153 -13.01509 -12.68448 -12.35150 -12.28242 -12.13780 -12.00520 -11.63338 -11.50240 -11.39882 -11.23480 -10.80098 -10.66809 -10.20031 -9.72501 -9.44855 -9.24500 -8.69947 -8.66325 -7.87775 -6.20873 -4.22356 2.86011 3.19094 3.32386 3.34154 3.41498 4.01390 4.12648 4.29432 4.42073 4.66884 4.74466 5.04454 5.12220 5.25847 5.42870 5.63681 5.65446 5.81973 5.83912 5.96841 6.06664 6.14451 6.21415 6.29354 6.41574 6.54402 6.77018 6.98987 7.14206 7.18756 7.53027 7.99574 8.35392 8.59008 8.79824 9.39346 10.91637 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037849 B = 0.006987 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.611277 B = 4006.436677 C = 4091.389784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.227 3.773 3 H 0.063 0.937 4 C -0.530 4.530 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.264 1.264 12 N -0.571 5.571 13 C 0.067 3.933 14 C 0.499 3.501 15 O -0.537 6.537 16 C 0.084 3.916 17 F -0.184 7.184 18 C -0.156 4.156 19 C 0.046 3.954 20 N -0.679 5.679 21 C 0.033 3.967 22 H 0.034 0.966 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.267 0.733 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.344 0.656 34 H 0.098 0.902 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 -1.516 -14.094 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.126 3.874 3 H 0.081 0.919 4 C -0.568 4.568 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.220 1.220 11 H -0.189 1.189 12 N -0.301 5.301 13 C -0.076 4.076 14 C 0.282 3.718 15 O -0.415 6.415 16 C 0.062 3.938 17 F -0.165 7.165 18 C -0.196 4.196 19 C -0.083 4.083 20 N -0.307 5.307 21 C -0.097 4.097 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.116 0.884 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.282 -1.495 -14.160 14.421 hybrid contribution -0.621 1.375 0.845 1.729 sum 1.660 -0.121 -13.315 13.419 Atomic orbital electron populations 1.22462 0.98826 1.01293 0.99416 1.19383 0.90244 0.95146 0.82636 0.91938 1.21115 1.32990 1.14334 0.88352 0.90249 1.24856 0.95608 0.96586 0.95586 1.69867 1.45011 1.40122 0.98000 0.86922 0.80510 0.83785 0.77536 1.20288 1.22019 1.18854 1.47890 1.47665 1.12188 1.22325 1.21995 1.02168 0.82076 1.01332 1.20246 0.80135 0.87114 0.84297 1.90672 1.57886 1.16281 1.76710 1.22388 0.85802 0.95394 0.90255 1.92814 1.57948 1.87896 1.77832 1.23591 0.98708 0.98050 0.99207 1.22962 0.99226 0.90211 0.95900 1.61758 1.05050 1.48329 1.15567 1.23291 0.92160 0.98184 0.96019 0.94698 0.92331 0.92971 0.92337 0.92508 0.90444 0.90979 0.88163 0.89093 0.90493 0.89916 0.84014 0.88364 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.65 37.16 0.32 -3.18 16 2 C 0.23 5.47 2.23 -69.09 -0.15 5.32 16 3 H 0.06 1.66 5.96 -51.93 -0.31 1.35 16 4 C -0.53 -14.47 8.95 -34.44 -0.31 -14.78 16 5 H 0.08 2.32 7.89 -52.49 -0.41 1.90 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 8 Si 0.88 21.64 24.37 -169.99 -4.14 17.50 16 9 H -0.28 -6.48 6.87 56.52 0.39 -6.09 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.57 -11.83 2.75 -175.26 -0.48 -12.31 16 13 C 0.07 1.15 8.36 59.85 0.50 1.65 16 14 C 0.50 9.97 6.71 -10.99 -0.07 9.90 16 15 O -0.54 -12.40 15.04 5.55 0.08 -12.32 16 16 C 0.08 1.31 0.95 -89.81 -0.09 1.23 16 17 F -0.18 -2.88 14.72 2.25 0.03 -2.85 16 18 C -0.16 -2.06 5.99 -24.45 -0.15 -2.21 16 19 C 0.05 0.49 7.58 -2.29 -0.02 0.47 16 20 N -0.68 -7.92 7.39 -110.79 -0.82 -8.74 16 21 C 0.03 0.46 5.93 -2.84 -0.02 0.44 16 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.17 6.66 -51.93 -0.35 0.83 16 24 H 0.05 1.17 3.27 -51.93 -0.17 1.00 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 27 H 0.08 1.30 6.43 -51.93 -0.33 0.96 16 28 H 0.07 1.07 4.91 -51.93 -0.25 0.81 16 29 H 0.10 1.42 7.41 -51.93 -0.38 1.03 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.34 3.45 8.91 -39.29 -0.35 3.10 16 34 H 0.10 1.29 7.46 -51.93 -0.39 0.90 16 35 H 0.08 1.16 7.81 -51.93 -0.41 0.76 16 LS Contribution 275.21 15.07 4.15 4.15 Total: -1.00 -31.29 275.21 -5.13 -36.42 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.65 Total: 3.02 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -0.08 Total: 0.91 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.53 Total: -46.83 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.08 Total: -12.32 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.03 Total: -2.85 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.29 -5.13 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877145556.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.612 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds