Wall clock time and date at job start Mon Mar 30 2020 18:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47453 * 2 1 4 4 C 1.50694 * 109.47196 * 120.00391 * 2 1 3 5 5 H 1.08002 * 120.00361 * 119.99947 * 4 2 1 6 6 C 1.37876 * 119.99856 * 299.72229 * 4 2 1 7 7 N 1.31508 * 120.00334 * 0.27327 * 6 4 2 8 8 Si 1.86805 * 120.00048 * 180.27562 * 6 4 2 9 9 H 1.48505 * 109.47297 * 89.99919 * 8 6 4 10 10 H 1.48493 * 109.47360 * 209.99998 * 8 6 4 11 11 H 1.48504 * 109.47095 * 330.00001 * 8 6 4 12 12 N 1.46508 * 109.46904 * 240.00088 * 2 1 3 13 13 C 1.46496 * 119.99867 * 300.00263 * 12 2 1 14 14 C 1.34774 * 119.99761 * 119.99972 * 12 2 1 15 15 O 1.21279 * 120.00080 * 175.09237 * 14 12 2 16 16 C 1.50701 * 120.00341 * 355.09522 * 14 12 2 17 17 F 1.39905 * 110.64122 * 311.25440 * 16 14 12 18 18 C 1.54592 * 110.72592 * 188.10036 * 16 14 12 19 19 C 1.53996 * 105.13993 * 219.68319 * 18 16 14 20 20 N 1.47909 * 107.05680 * 358.77414 * 19 18 16 21 21 C 1.48534 * 105.81696 * 25.33096 * 20 19 18 22 22 H 1.08994 * 109.47142 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46736 * 299.99739 * 1 2 3 24 24 H 1.08997 * 109.47328 * 59.99364 * 1 2 3 25 25 H 0.97000 * 120.00468 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.47456 * 95.12671 * 13 12 2 27 27 H 1.09006 * 109.46765 * 215.12104 * 13 12 2 28 28 H 1.09003 * 109.47312 * 335.12411 * 13 12 2 29 29 H 1.09001 * 110.31054 * 338.59746 * 18 16 14 30 30 H 1.08995 * 110.30900 * 100.76896 * 18 16 14 31 31 H 1.09001 * 109.91651 * 118.12524 * 19 18 16 32 32 H 1.08997 * 109.91641 * 239.22376 * 19 18 16 33 33 H 1.00896 * 110.99548 * 264.81547 * 20 19 18 34 34 H 1.09008 * 110.66297 * 202.35608 * 21 20 19 35 35 H 1.09004 * 110.66965 * 79.23076 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.7040 -0.2361 2.4826 7 7 0.9480 0.8331 2.6034 8 14 2.3330 -1.1123 4.0078 9 1 3.6426 -0.5357 4.4053 10 1 1.3592 -0.9389 5.1154 11 1 2.4975 -2.5589 3.7152 12 7 2.0183 -0.6906 -1.1963 13 6 1.6643 -2.0931 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.2705 -0.6300 -3.0266 16 6 3.0664 1.4355 -1.9034 17 9 1.8768 2.1327 -1.6664 18 6 3.8012 2.0103 -3.1361 19 6 4.8434 2.9885 -2.5631 20 7 4.6796 2.9850 -1.0931 21 6 4.0808 1.6682 -0.7557 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.7173 1.1671 3.4844 26 1 0.7889 -2.1447 -2.0756 27 1 2.5001 -2.6046 -1.9057 28 1 1.4406 -2.5737 -0.4756 29 1 4.2958 1.2112 -3.6883 30 1 3.1003 2.5396 -3.7815 31 1 5.8479 2.6565 -2.8256 32 1 4.6687 3.9897 -2.9568 33 1 4.0823 3.7412 -0.7941 34 1 3.5698 1.7132 0.2062 35 1 4.8427 0.8887 -0.7516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877145557.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:09 Heat of formation + Delta-G solvation = -74.426940 kcal Electronic energy + Delta-G solvation = -19247.481478 eV Core-core repulsion = 16195.116469 eV Total energy + Delta-G solvation = -3052.365009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.53037 -39.34181 -37.26734 -35.68427 -32.72232 -29.82726 -29.26175 -29.04888 -26.16363 -25.33727 -22.40600 -21.51179 -20.80524 -18.62163 -17.21627 -16.84283 -16.05861 -15.55010 -15.33755 -14.71917 -14.41555 -14.07492 -13.69114 -13.43022 -13.11571 -12.71358 -12.29685 -12.21186 -11.87306 -11.51936 -11.50125 -11.37230 -11.06558 -10.98039 -10.88764 -10.79319 -10.59904 -10.26360 -10.19916 -9.38879 -9.19466 -8.58303 -8.46730 -7.76211 -6.20582 -4.30240 3.01676 3.20435 3.28136 3.30598 3.65142 4.27033 4.33890 4.52935 4.69484 5.00447 5.08875 5.10840 5.35615 5.46816 5.73141 5.95880 6.02125 6.08780 6.13272 6.24669 6.31810 6.43185 6.56119 6.73954 6.77829 6.93672 7.12899 7.35470 7.42892 7.61820 7.81825 8.06142 8.29768 8.62100 8.81552 9.37774 10.83739 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.009301 C = 0.008091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.177970 B = 3009.811178 C = 3459.831912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.242 3.758 3 H 0.067 0.933 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.577 5.577 13 C 0.092 3.908 14 C 0.501 3.499 15 O -0.561 6.561 16 C 0.072 3.928 17 F -0.184 7.184 18 C -0.163 4.163 19 C 0.043 3.957 20 N -0.668 5.668 21 C 0.035 3.965 22 H 0.031 0.969 23 H 0.094 0.906 24 H 0.013 0.987 25 H 0.265 0.735 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.342 0.658 34 H 0.114 0.886 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 2.600 -6.122 7.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.142 3.858 3 H 0.085 0.915 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.051 4.051 14 C 0.286 3.714 15 O -0.442 6.442 16 C 0.048 3.952 17 F -0.165 7.165 18 C -0.203 4.203 19 C -0.087 4.087 20 N -0.295 5.295 21 C -0.095 4.095 22 H 0.050 0.950 23 H 0.113 0.887 24 H 0.033 0.967 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.796 2.276 -6.227 7.640 hybrid contribution -0.955 -0.344 0.627 1.193 sum 2.841 1.932 -5.601 6.570 Atomic orbital electron populations 1.22067 0.97835 0.99692 1.01015 1.19418 0.91999 0.94108 0.80305 0.91535 1.21324 1.32368 1.13477 0.90037 0.91954 1.24874 0.94680 0.94931 0.98964 1.69868 1.35855 1.22422 1.24052 0.86497 0.78726 0.80039 0.82224 1.20418 1.21079 1.19858 1.48302 1.47229 1.11965 1.23039 1.21480 0.99363 0.82481 1.01822 1.20331 0.79735 0.88552 0.82812 1.90597 1.52623 1.68605 1.32421 1.22553 0.83720 0.89723 0.99162 1.92889 1.48125 1.80104 1.95364 1.23301 0.99127 1.00978 0.96852 1.22769 0.99133 0.98769 0.88004 1.62721 1.50455 1.04485 1.11817 1.23811 0.95097 0.92626 0.97962 0.95015 0.88703 0.96744 0.92482 0.93942 0.92163 0.89964 0.87692 0.90122 0.90117 0.91213 0.84183 0.86792 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.24 5.65 1.83 -69.08 -0.13 5.52 16 3 H 0.07 1.62 3.47 -51.93 -0.18 1.44 16 4 C -0.53 -13.36 7.95 -34.44 -0.27 -13.64 16 5 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 6 C 0.07 1.74 5.31 -17.82 -0.09 1.65 16 7 N -0.88 -23.11 11.33 55.43 0.63 -22.48 16 8 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.58 -12.48 2.75 -175.26 -0.48 -12.96 16 13 C 0.09 1.77 9.36 59.84 0.56 2.33 16 14 C 0.50 10.59 6.80 -10.99 -0.07 10.52 16 15 O -0.56 -12.51 15.06 5.56 0.08 -12.43 16 16 C 0.07 1.34 1.04 -89.91 -0.09 1.24 16 17 F -0.18 -3.69 14.85 2.25 0.03 -3.66 16 18 C -0.16 -2.51 6.20 -25.38 -0.16 -2.66 16 19 C 0.04 0.57 7.52 -2.75 -0.02 0.55 16 20 N -0.67 -10.13 7.51 -110.07 -0.83 -10.95 16 21 C 0.04 0.63 6.25 -1.90 -0.01 0.62 16 22 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 23 H 0.09 2.38 6.08 -51.93 -0.32 2.06 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.12 7.52 -51.93 -0.39 0.73 16 28 H 0.08 1.58 7.10 -51.93 -0.37 1.21 16 29 H 0.10 1.69 6.77 -51.93 -0.35 1.34 16 30 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.34 4.88 8.92 -39.29 -0.35 4.53 16 34 H 0.11 2.29 6.62 -51.92 -0.34 1.95 16 35 H 0.10 1.78 8.04 -51.93 -0.42 1.37 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -27.32 282.21 -6.05 -33.37 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.75 Total: 6.87 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 0.04 Total: 3.04 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.68 Total: -46.40 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.03 Total: -3.66 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.32 -6.05 -33.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877145557.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.058 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds