Wall clock time and date at job start Mon Mar 30 2020 18:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00181 * 179.97438 * 12 11 10 14 14 O 1.21506 * 120.00019 * 0.02562 * 13 12 11 15 15 O 1.34640 * 120.00026 * 179.97438 * 13 12 11 16 16 C 1.45197 * 116.99927 * 179.97438 * 15 13 12 17 17 H 1.09000 * 110.71144 * 29.30192 * 16 15 13 18 18 C 1.55130 * 110.79595 * 152.63987 * 16 15 13 19 19 N 1.48991 * 101.55981 * 153.44213 * 18 16 15 20 20 O 1.47048 * 105.68936 * 323.02344 * 19 18 16 21 21 C 1.43495 * 108.98581 * 24.88660 * 20 19 18 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 24 24 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 25 25 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 26 26 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 27 27 H 1.09009 * 109.47216 * 299.99697 * 11 10 9 28 28 H 1.08998 * 109.47141 * 59.99668 * 11 10 9 29 29 H 0.97002 * 119.99778 * 359.97438 * 12 11 10 30 30 H 1.08996 * 110.99156 * 271.68672 * 18 16 15 31 31 H 1.09005 * 110.99003 * 35.49933 * 18 16 15 32 32 H 1.00903 * 110.81778 * 83.35465 * 19 18 16 33 33 H 1.08997 * 110.03811 * 239.22191 * 21 20 19 34 34 H 1.09007 * 110.03426 * 117.78928 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 7 2.4325 -6.1005 0.0030 13 6 1.9833 -7.3712 0.0034 14 8 0.7887 -7.5933 0.0017 15 8 2.8583 -8.3946 0.0045 16 6 2.3034 -9.7363 0.0054 17 1 1.3346 -9.7531 -0.4939 18 6 3.2834 -10.7381 -0.6599 19 7 2.9019 -12.0154 0.0054 20 8 2.5817 -11.6595 1.3958 21 6 2.1873 -10.2807 1.4457 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6248 -2.5571 -0.8896 25 1 2.8727 -3.6046 -0.8877 26 1 2.8714 -3.6038 0.8922 27 1 0.8528 -5.0447 0.8906 28 1 0.8548 -5.0449 -0.8894 29 1 3.3862 -5.9232 0.0040 30 1 3.1178 -10.7900 -1.7360 31 1 4.3183 -10.4778 -0.4378 32 1 2.1066 -12.4348 -0.4527 33 1 2.8510 -9.7262 2.1091 34 1 1.1575 -10.1993 1.7938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916738684.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:39 Heat of formation + Delta-G solvation = -89.972908 kcal Electronic energy + Delta-G solvation = -17115.784621 eV Core-core repulsion = 14050.372699 eV Total energy + Delta-G solvation = -3065.411922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.83243 -39.05279 -36.86442 -35.57559 -33.76909 -32.57168 -31.32078 -30.02405 -26.58724 -24.55019 -23.49546 -22.34366 -21.20479 -20.98016 -18.88008 -17.97767 -17.30183 -16.80998 -16.33156 -15.91051 -15.11719 -14.84055 -14.69065 -14.33154 -13.77363 -13.63842 -13.14941 -13.02813 -12.85090 -12.37496 -12.04423 -11.72452 -11.06596 -11.02745 -10.84626 -10.79236 -10.65379 -10.20339 -10.12857 -9.95788 -9.80055 -9.17169 -8.65214 -8.39542 -6.42727 -4.13195 1.85280 2.41564 2.68807 3.40317 3.41915 3.60919 3.71299 3.84686 3.94344 4.31354 4.49494 4.52964 4.75961 5.03471 5.14386 5.26489 5.34302 5.40785 5.50558 5.86120 5.95534 5.96426 6.19754 6.32762 6.32892 6.53018 6.71339 7.26225 7.34420 7.38366 8.10298 8.19345 8.38164 8.80686 9.59440 10.98032 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.080008 B = 0.003145 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.882405 B = 8902.218321 C = 9026.444333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.606 4.606 8 H 0.050 0.950 9 C 0.012 3.988 10 C -0.115 4.115 11 C 0.131 3.869 12 N -0.699 5.699 13 C 0.641 3.359 14 O -0.573 6.573 15 O -0.355 6.355 16 C 0.061 3.939 17 H 0.106 0.894 18 C 0.013 3.987 19 N -0.469 5.469 20 O -0.217 6.217 21 C 0.002 3.998 22 H 0.269 0.731 23 H 0.011 0.989 24 H 0.011 0.989 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.407 0.593 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.346 0.654 33 H 0.091 0.909 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 -19.821 -1.325 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.644 4.644 8 H 0.068 0.932 9 C -0.026 4.026 10 C -0.153 4.153 11 C 0.010 3.990 12 N -0.357 5.357 13 C 0.392 3.608 14 O -0.461 6.461 15 O -0.268 6.268 16 C 0.002 3.998 17 H 0.124 0.876 18 C -0.117 4.117 19 N -0.136 5.136 20 O -0.227 6.227 21 C -0.078 4.078 22 H 0.080 0.920 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.242 0.758 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.160 0.840 33 H 0.109 0.891 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.304 -18.761 -1.007 19.818 hybrid contribution -0.427 -0.941 -0.299 1.076 sum 5.878 -19.703 -1.305 20.602 Atomic orbital electron populations 1.70789 1.06906 1.30688 1.46293 1.25878 0.96539 1.02822 0.93665 0.83531 0.74890 0.75282 0.76526 1.20716 1.21400 1.21416 1.22000 0.94302 0.91837 1.56233 0.93191 1.19156 0.94440 0.92510 0.96495 1.21798 0.99667 0.92206 1.01602 1.21774 0.91152 0.83596 1.02454 1.45020 1.11876 1.02143 1.76650 1.18249 0.83640 0.82113 0.76753 1.91001 1.14786 1.84271 1.56081 1.86331 1.38942 1.14443 1.87124 1.25050 0.99262 0.79508 0.96004 0.87591 1.24079 1.01598 0.86550 0.99495 1.69210 1.34143 1.18375 0.91843 1.91714 1.89788 1.24709 1.16445 1.23989 1.02212 0.84843 0.96714 0.92028 0.97060 0.97068 0.92185 0.92163 0.91319 0.91321 0.75785 0.87398 0.86778 0.83987 0.89083 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.61 13.65 55.43 0.76 -26.85 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 3 Si 1.07 24.79 29.90 -169.99 -5.08 19.71 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.61 -16.77 9.11 -34.44 -0.31 -17.08 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.01 0.28 4.28 -27.88 -0.12 0.16 16 10 C -0.11 -2.15 5.27 -26.73 -0.14 -2.29 16 11 C 0.13 2.17 5.67 -4.05 -0.02 2.14 16 12 N -0.70 -9.74 5.56 -65.28 -0.36 -10.10 16 13 C 0.64 9.39 8.75 54.05 0.47 9.86 16 14 O -0.57 -10.07 15.63 -19.28 -0.30 -10.37 16 15 O -0.36 -4.24 10.02 -40.32 -0.40 -4.65 16 16 C 0.06 0.61 3.41 -24.86 -0.08 0.52 16 17 H 0.11 1.09 7.22 -51.93 -0.37 0.71 16 18 C 0.01 0.10 7.60 -1.53 -0.01 0.09 16 19 N -0.47 -3.96 8.53 -8.07 -0.07 -4.03 16 20 O -0.22 -2.40 12.58 -14.35 -0.18 -2.58 16 21 C 0.00 0.02 7.71 37.90 0.29 0.31 16 22 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 23 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 24 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.41 4.68 8.58 -40.82 -0.35 4.33 16 30 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.35 2.08 9.09 -39.29 -0.36 1.72 16 33 H 0.09 0.94 8.06 -51.93 -0.42 0.52 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -32.77 295.39 -6.01 -38.78 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.79 Total: 1.59 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -0.03 Total: -5.95 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.32 Total: -40.98 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.89 Total: -17.60 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.77 -6.01 -38.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916738684.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.197 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds