Wall clock time and date at job start Mon Mar 30 2020 18:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00097 * 2 1 4 4 H 1.48494 * 109.47200 * 240.00349 * 3 2 1 5 5 H 1.48506 * 109.46886 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47354 * 120.00135 * 3 2 1 7 7 C 1.37878 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00070 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99687 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00478 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99465 * 355.02129 * 11 10 9 13 13 N 1.34777 * 120.00559 * 175.02042 * 11 10 9 14 14 C 1.47160 * 120.97891 * 5.25335 * 13 11 10 15 15 C 1.53291 * 108.38164 * 129.43801 * 14 13 11 16 16 O 1.42960 * 109.22156 * 52.30652 * 15 14 13 17 17 C 1.42966 * 114.16620 * 297.41144 * 16 15 14 18 18 C 1.47146 * 120.98391 * 184.96908 * 13 11 10 19 19 H 1.09004 * 109.68285 * 110.83669 * 18 13 11 20 20 C 1.52998 * 109.68237 * 350.28174 * 18 13 11 21 21 O 1.42899 * 109.47450 * 296.62961 * 20 18 13 22 22 H 0.96994 * 119.99606 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47264 * 60.00285 * 9 7 2 24 24 H 1.08997 * 109.47135 * 299.99895 * 9 7 2 25 25 H 0.97005 * 120.00232 * 359.97438 * 10 9 7 26 26 H 1.08994 * 109.67747 * 249.16419 * 14 13 11 27 27 H 1.08999 * 109.68130 * 9.67884 * 14 13 11 28 28 H 1.09008 * 109.50819 * 172.22471 * 15 14 13 29 29 H 1.08993 * 109.51607 * 292.37425 * 15 14 13 30 30 H 1.08997 * 109.51367 * 182.50684 * 17 16 15 31 31 H 1.09001 * 109.51465 * 302.61013 * 17 16 15 32 32 H 1.09005 * 109.46781 * 56.62845 * 20 18 13 33 33 H 1.09001 * 109.46999 * 176.62624 * 20 18 13 34 34 H 0.96696 * 114.00200 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5623 -5.1068 0.0918 13 7 2.6255 -5.9063 -0.1013 14 6 4.0776 -5.6674 -0.0983 15 6 4.7181 -6.5960 0.9396 16 8 4.2963 -7.9395 0.6929 17 6 2.8877 -8.1445 0.8260 18 6 2.1534 -7.2956 -0.2120 19 1 2.3658 -7.6771 -1.2108 20 6 0.6474 -7.3506 0.0519 21 8 0.3833 -6.9355 1.3935 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 3.1568 -3.4354 -0.0009 26 1 4.4869 -5.8821 -1.0853 27 1 4.2782 -4.6287 0.1643 28 1 5.8037 -6.5352 0.8617 29 1 4.4067 -6.2943 1.9396 30 1 2.6564 -9.1976 0.6664 31 1 2.5697 -7.8493 1.8259 32 1 0.1325 -6.6862 -0.6421 33 1 0.2908 -8.3709 -0.0897 34 1 -0.5539 -6.9461 1.6312 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922228386.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:42 Heat of formation + Delta-G solvation = -123.736734 kcal Electronic energy + Delta-G solvation = -18640.063721 eV Core-core repulsion = 15573.187689 eV Total energy + Delta-G solvation = -3066.876032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 244.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68748 -39.37827 -37.62658 -35.98291 -35.65802 -34.29643 -32.71772 -29.84750 -28.45312 -26.88108 -24.88564 -23.83004 -22.67007 -20.87447 -19.29989 -18.46539 -18.08504 -17.58292 -16.92181 -16.59782 -16.46607 -16.06467 -15.97076 -15.71395 -14.97727 -14.79620 -14.38177 -14.20467 -13.86606 -13.70428 -12.99380 -12.89136 -12.68605 -12.45122 -12.23113 -12.17550 -11.79204 -11.48100 -11.22341 -11.02104 -10.76915 -10.23141 -9.68535 -9.29971 -8.28309 -6.44837 1.42778 1.47414 1.55140 1.69307 2.31579 2.38470 2.83632 3.06460 3.12967 3.53389 3.73474 3.94466 4.06213 4.13626 4.24646 4.39614 4.52192 4.60628 4.79362 4.82033 4.98570 5.03079 5.06721 5.29298 5.45736 5.60813 5.74351 5.87450 6.07544 6.11463 6.66773 6.98535 7.21852 7.25930 7.79526 8.83762 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.035132 B = 0.005955 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.799887 B = 4700.718633 C = 5322.246298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.080 0.920 9 C 0.291 3.709 10 N -0.730 5.730 11 C 0.695 3.305 12 O -0.608 6.608 13 N -0.631 5.631 14 C 0.072 3.928 15 C 0.051 3.949 16 O -0.388 6.388 17 C 0.061 3.939 18 C 0.125 3.875 19 H 0.103 0.897 20 C 0.084 3.916 21 O -0.575 6.575 22 H 0.269 0.731 23 H -0.015 1.015 24 H -0.017 1.017 25 H 0.397 0.603 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.045 0.955 30 H 0.129 0.871 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -14.797 -0.085 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.098 0.902 9 C 0.168 3.832 10 N -0.386 5.386 11 C 0.397 3.603 12 O -0.489 6.489 13 N -0.371 5.371 14 C -0.051 4.051 15 C -0.026 4.026 16 O -0.306 6.306 17 C -0.016 4.016 18 C 0.021 3.979 19 H 0.121 0.879 20 C 0.007 3.993 21 O -0.381 6.381 22 H 0.078 0.922 23 H 0.003 0.997 24 H 0.001 0.999 25 H 0.234 0.766 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.156 0.844 29 H 0.063 0.937 30 H 0.147 0.853 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 9.281 -14.907 -0.080 17.560 hybrid contribution -0.622 1.255 0.067 1.402 sum 8.659 -13.652 -0.012 16.167 Atomic orbital electron populations 1.70132 1.08238 1.28615 1.49869 1.26050 0.95785 1.03800 0.93807 0.85206 0.77930 0.76594 0.79468 1.18607 1.20972 1.18762 1.21567 0.94183 0.90667 1.53090 0.90163 1.18321 0.87976 0.83219 0.93684 1.45558 1.10609 1.04107 1.78352 1.16173 0.85052 0.81149 0.77957 1.90758 1.16207 1.83165 1.58774 1.47290 1.06066 1.05253 1.78535 1.22550 0.79286 1.01363 1.01908 1.23078 1.01402 0.81493 0.96629 1.87905 1.22975 1.28368 1.91359 1.22911 0.80276 1.00805 0.97632 1.22019 0.94397 0.80659 1.00778 0.87893 1.22259 0.93822 0.97421 0.85840 1.86374 1.30809 1.91390 1.29513 0.92230 0.99750 0.99923 0.76598 0.88914 0.89055 0.84444 0.93680 0.85320 0.93428 0.93052 0.91637 0.77146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.99 42.54 29.54 68.60 2.03 44.57 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.56 -30.88 9.28 25.60 0.24 -30.64 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.00 16 9 C 0.29 16.44 5.43 85.63 0.47 16.91 16 10 N -0.73 -32.92 5.46 -482.31 -2.63 -35.55 16 11 C 0.69 29.99 8.00 179.05 1.43 31.43 16 12 O -0.61 -29.98 10.92 19.36 0.21 -29.77 16 13 N -0.63 -20.40 3.02 -812.16 -2.45 -22.85 16 14 C 0.07 1.72 6.57 86.35 0.57 2.28 16 15 C 0.05 1.06 6.98 72.08 0.50 1.56 16 16 O -0.39 -8.97 10.74 -148.98 -1.60 -10.57 16 17 C 0.06 1.42 6.20 71.94 0.45 1.86 16 18 C 0.13 3.38 3.46 44.83 0.16 3.54 16 19 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 20 C 0.08 2.48 5.80 71.98 0.42 2.90 16 21 O -0.57 -19.40 10.45 -125.62 -1.31 -20.72 16 22 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 23 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 24 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 25 H 0.40 15.22 5.88 -92.70 -0.54 14.67 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.09 2.15 5.78 -2.39 -0.01 2.14 16 28 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.31 7.33 -2.39 -0.02 1.29 16 32 H 0.05 1.89 5.97 -3.55 -0.02 1.87 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.38 10.77 9.12 -74.06 -0.68 10.10 16 Total: -1.00 -74.01 277.02 -0.89 -74.90 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.10 Total: 25.65 kcal Atomic # 6 Polarization: 25.91 SS G_CDS: 4.69 Total: 30.59 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.80 Total: -114.64 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -2.70 Total: -61.06 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -74.01 -0.89 -74.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922228386.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.840 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds