Wall clock time and date at job start Mon Mar 30 2020 18:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47286 * 88.05090 * 3 2 1 5 5 C 1.36939 * 119.99891 * 264.42603 * 4 3 2 6 6 H 1.08002 * 119.99801 * 196.59602 * 5 4 3 7 7 C 1.38812 * 120.00022 * 16.58328 * 5 4 3 8 8 N 1.31618 * 120.00092 * 22.43855 * 7 5 4 9 9 Si 1.86798 * 119.99988 * 202.43343 * 7 5 4 10 10 H 1.48495 * 109.47377 * 60.00124 * 9 7 5 11 11 H 1.48500 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47063 * 300.00070 * 9 7 5 13 13 C 1.46503 * 120.00175 * 84.41775 * 4 3 2 14 14 C 1.50697 * 109.47230 * 270.00383 * 13 4 3 15 15 C 1.38223 * 119.62184 * 95.02282 * 14 13 4 16 16 C 1.38621 * 119.16733 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.79422 * 180.02562 * 16 15 14 18 18 C 1.38681 * 118.41778 * 359.74871 * 16 15 14 19 19 C 1.38186 * 119.15981 * 0.49367 * 18 16 15 20 20 C 1.50699 * 119.61313 * 179.77410 * 19 18 16 21 21 N 1.31862 * 119.61688 * 274.99989 * 14 13 4 22 22 H 4.40646 * 5.51421 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.47014 * 328.04805 * 3 2 1 24 24 H 1.09006 * 109.46934 * 208.04908 * 3 2 1 25 25 H 0.96991 * 120.00446 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.46931 * 150.00175 * 13 4 3 27 27 H 1.09001 * 109.46968 * 30.00711 * 13 4 3 28 28 H 1.08004 * 120.41394 * 359.97438 * 15 14 13 29 29 H 1.08996 * 109.46975 * 90.00103 * 17 16 15 30 30 H 1.09001 * 109.46911 * 210.00013 * 17 16 15 31 31 H 1.09001 * 109.46875 * 330.00119 * 17 16 15 32 32 H 1.07998 * 120.41726 * 180.24375 * 18 16 15 33 33 H 1.09003 * 109.46689 * 269.72562 * 20 19 18 34 34 H 1.09005 * 109.47468 * 29.72406 * 20 19 18 35 35 H 1.08997 * 109.47052 * 149.72430 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 -0.0461 -1.3804 5 6 3.4717 -1.2462 -1.9470 6 1 4.0730 -1.2699 -2.8438 7 6 3.0412 -2.4323 -1.3685 8 7 1.9875 -2.4353 -0.5797 9 14 3.9570 -4.0243 -1.7096 10 1 5.3643 -3.8931 -1.2541 11 1 3.3016 -5.1387 -0.9791 12 1 3.9329 -4.3066 -3.1674 13 6 3.2616 1.1911 -2.1547 14 6 1.9722 1.4606 -2.8865 15 6 1.0285 2.2981 -2.3221 16 6 -0.1541 2.5398 -3.0038 17 6 -1.2079 3.4471 -2.4228 18 6 -0.3420 1.9315 -4.2358 19 6 0.6445 1.1023 -4.7347 20 6 0.4488 0.4320 -6.0701 21 7 1.7574 0.8950 -4.0582 22 1 -1.0501 0.0002 0.0000 23 1 3.0097 -0.8711 0.5438 24 1 3.0089 0.9078 0.4833 25 1 1.6864 -3.2641 -0.1757 26 1 4.0733 1.0871 -2.8748 27 1 3.4775 2.0205 -1.4813 28 1 1.2102 2.7583 -1.3621 29 1 -1.0273 4.4706 -2.7512 30 1 -2.1922 3.1248 -2.7624 31 1 -1.1662 3.4020 -1.3345 32 1 -1.2495 2.1006 -4.7964 33 1 -0.0328 -0.5349 -5.9242 34 1 -0.1795 1.0590 -6.7029 35 1 1.4170 0.2872 -6.5493 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930314148.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:04:45 Heat of formation + Delta-G solvation = 109.381876 kcal Electronic energy + Delta-G solvation = -17520.864269 eV Core-core repulsion = 14907.239033 eV Total energy + Delta-G solvation = -2613.625236 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.67555 -36.10873 -33.59057 -32.70091 -31.50756 -30.62827 -27.76080 -27.21917 -26.25504 -25.56868 -22.30257 -20.85356 -20.02100 -17.42303 -16.40192 -15.94091 -15.49956 -15.04038 -14.39541 -14.06462 -13.58888 -13.36783 -13.07818 -13.03650 -12.42841 -12.36642 -12.22694 -11.83217 -11.64793 -11.44766 -11.18902 -10.95729 -10.82425 -10.66214 -10.25386 -9.92989 -8.96987 -8.86552 -8.78312 -8.66541 -8.38566 -8.05359 -7.02466 -5.76404 -3.14114 1.80315 1.93732 3.41987 3.47087 3.48533 4.17606 4.41751 4.45583 4.59883 4.90346 5.06663 5.19810 5.41097 5.56424 5.64414 5.68741 5.73886 5.78291 5.85217 5.95743 5.98820 6.01056 6.07389 6.20715 6.38184 6.50998 6.62575 6.68911 6.83603 6.90740 7.22528 7.41514 7.45994 7.83441 8.28549 8.87696 9.13098 9.23598 9.76898 10.21870 11.27151 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.008650 C = 0.007386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.311889 B = 3236.371254 C = 3789.888834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 C -0.093 4.093 3 C 0.265 3.735 4 N -0.569 5.569 5 C -0.250 4.250 6 H 0.080 0.920 7 C 0.001 3.999 8 N -0.889 5.889 9 Si 0.903 3.097 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.185 3.815 14 C 0.139 3.861 15 C -0.168 4.168 16 C -0.047 4.047 17 C -0.109 4.109 18 C -0.198 4.198 19 C 0.125 3.875 20 C -0.098 4.098 21 N -0.468 5.468 22 H 0.185 0.815 23 H 0.099 0.901 24 H 0.038 0.962 25 H 0.254 0.746 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 9.987 -3.522 11.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.096 4.096 3 C 0.140 3.860 4 N -0.287 5.287 5 C -0.379 4.379 6 H 0.098 0.902 7 C -0.198 4.198 8 N -0.532 5.532 9 Si 0.733 3.267 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.210 1.210 13 C 0.058 3.942 14 C -0.002 4.002 15 C -0.189 4.189 16 C -0.055 4.055 17 C -0.166 4.166 18 C -0.219 4.219 19 C -0.013 4.013 20 C -0.155 4.155 21 N -0.179 5.179 22 H 0.203 0.797 23 H 0.117 0.883 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.138 0.862 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.830 9.258 -3.763 10.387 hybrid contribution -1.085 -0.646 0.126 1.269 sum -3.914 8.612 -3.637 10.135 Atomic orbital electron populations 1.24055 0.95199 1.08144 1.04397 1.24197 0.95181 0.93785 0.96472 1.17947 0.82922 0.99173 0.85999 1.44527 1.73210 1.02550 1.08371 1.19282 1.25494 0.82345 1.10775 0.90223 1.24946 0.96460 0.97852 1.00571 1.70133 1.21506 1.26339 1.35204 0.86340 0.79595 0.82986 0.77767 1.20936 1.21853 1.20979 1.20077 0.91271 0.89672 0.93193 1.22694 0.99203 0.88708 0.89616 1.21685 0.94843 1.01644 1.00701 1.20125 0.95037 0.96239 0.94092 1.20730 0.96741 0.98003 1.01112 1.21549 1.00628 1.02300 0.97401 1.21179 0.90015 0.93938 0.96206 1.20622 1.02645 1.00023 0.92246 1.67395 1.21523 1.20891 1.08137 0.79748 0.88304 0.94381 0.93570 0.91390 0.92364 0.86181 0.91374 0.91754 0.91365 0.86315 0.90926 0.91670 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.97 19.25 29.55 0.57 -6.40 16 2 C -0.09 -2.28 10.62 -37.13 -0.39 -2.67 16 3 C 0.26 6.23 5.45 -6.83 -0.04 6.19 16 4 N -0.57 -13.94 2.49 -177.95 -0.44 -14.39 16 5 C -0.25 -6.80 9.66 -15.06 -0.15 -6.94 16 6 H 0.08 2.18 7.90 -52.49 -0.41 1.76 16 7 C 0.00 0.02 4.85 -17.43 -0.08 -0.07 16 8 N -0.89 -25.59 9.49 55.49 0.53 -25.06 16 9 Si 0.90 21.94 29.61 -169.99 -5.03 16.91 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.19 3.89 6.01 -5.19 -0.03 3.86 16 14 C 0.14 2.96 6.07 -82.59 -0.50 2.46 16 15 C -0.17 -3.17 8.75 -39.45 -0.35 -3.52 16 16 C -0.05 -0.80 5.92 -104.32 -0.62 -1.42 16 17 C -0.11 -1.40 10.06 36.01 0.36 -1.03 16 18 C -0.20 -3.38 9.45 -39.44 -0.37 -3.75 16 19 C 0.12 2.38 6.78 -82.59 -0.56 1.82 16 20 C -0.10 -1.49 10.17 36.01 0.37 -1.12 16 21 N -0.47 -10.37 10.19 -5.74 -0.06 -10.43 16 22 H 0.19 3.76 7.80 -54.09 -0.42 3.34 16 23 H 0.10 2.53 6.42 -51.93 -0.33 2.20 16 24 H 0.04 0.77 7.97 -51.93 -0.41 0.35 16 25 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.07 1.41 8.02 -51.93 -0.42 1.00 16 27 H 0.06 1.04 7.85 -51.93 -0.41 0.63 16 28 H 0.12 2.10 8.06 -52.48 -0.42 1.68 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -31.61 305.24 -7.12 -38.72 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.92 Total: 2.24 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -1.79 Total: -12.60 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.03 Total: -49.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.61 -7.12 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314148.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.104 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds