Wall clock time and date at job start Mon Mar 30 2020 18:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48506 * 109.46761 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47262 * 299.99717 * 3 2 1 6 6 H 1.48494 * 109.47304 * 60.00201 * 3 2 1 7 7 C 1.40024 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99838 * 165.68541 * 7 2 1 9 9 C 1.41357 * 120.00666 * 345.68754 * 7 2 1 10 10 C 1.40638 * 119.79838 * 169.73257 * 9 7 2 11 11 C 1.38256 * 119.10570 * 179.72552 * 10 9 7 12 12 C 1.38769 * 118.65345 * 0.49193 * 11 10 9 13 13 C 1.39466 * 119.50499 * 359.50750 * 12 11 10 14 14 N 1.39837 * 119.56561 * 180.27624 * 13 12 11 15 15 N 1.40322 * 126.86313 * 333.23850 * 14 13 12 16 16 N 1.28768 * 108.00689 * 179.82102 * 15 14 13 17 17 C 1.33383 * 109.93236 * 0.45236 * 16 15 14 18 18 C 1.34952 * 109.01637 * 359.70953 * 17 16 15 19 19 C 1.50696 * 126.61569 * 179.97438 * 18 17 16 20 20 N 1.46897 * 109.46877 * 94.17189 * 19 18 17 21 21 N 1.31865 * 120.87550 * 0.25069 * 13 12 11 22 22 H 0.96993 * 119.99474 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.44702 * 359.97438 * 10 9 7 24 24 H 1.08005 * 120.67004 * 180.25063 * 11 10 9 25 25 H 1.08003 * 120.24514 * 179.78292 * 12 11 10 26 26 H 1.07994 * 125.49374 * 179.74655 * 17 16 15 27 27 H 1.08990 * 109.47565 * 214.17662 * 19 18 17 28 28 H 1.09002 * 109.47074 * 334.18046 * 19 18 17 29 29 H 1.00897 * 111.00445 * 56.05492 * 20 19 18 30 30 H 1.00905 * 110.99822 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0625 -1.2273 -0.2307 9 6 1.3338 -2.4178 0.3037 10 6 1.9780 -3.6503 0.0946 11 6 1.3078 -4.8200 0.4014 12 6 0.0144 -4.7354 0.8969 13 6 -0.5698 -3.4826 1.0819 14 7 -1.8710 -3.3957 1.5866 15 7 -2.8844 -4.3595 1.4722 16 7 -3.9318 -3.9087 2.0704 17 6 -3.6840 -2.6971 2.5700 18 6 -2.4105 -2.3551 2.2831 19 6 -1.7182 -1.0706 2.6594 20 7 -0.9884 -1.2589 3.9203 21 7 0.0889 -2.3788 0.7875 22 1 -0.4849 0.8400 -0.0004 23 1 2.9841 -3.6826 -0.2965 24 1 1.7799 -5.7802 0.2546 25 1 -0.5342 -5.6330 1.1418 26 1 -4.3888 -2.0881 3.1166 27 1 -1.0178 -0.7912 1.8725 28 1 -2.4595 -0.2811 2.7831 29 1 -0.3398 -2.0286 3.8513 30 1 -0.5156 -0.4107 4.1946 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169310266.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:05:56 Heat of formation + Delta-G solvation = 117.415988 kcal Electronic energy + Delta-G solvation = -17496.039148 eV Core-core repulsion = 14713.796043 eV Total energy + Delta-G solvation = -2782.243105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.12889 -40.27265 -36.23004 -35.87470 -34.56581 -32.61827 -31.55941 -31.00462 -27.78216 -26.34663 -24.81634 -23.86107 -22.31535 -21.48439 -19.54862 -18.70570 -17.21014 -16.87319 -16.72210 -16.56744 -16.22254 -15.65459 -15.16678 -14.81410 -14.53715 -14.31381 -13.89158 -13.65720 -13.17125 -12.89846 -12.75272 -12.68378 -12.42611 -12.18903 -12.01734 -11.82411 -11.16560 -10.34784 -10.24325 -10.00385 -9.53007 -9.37584 -8.59098 -6.61633 -0.19572 0.83117 1.02144 1.22425 1.43947 1.50023 1.54419 1.57551 2.18897 2.65071 3.42018 3.58839 3.76818 3.81544 3.95347 4.14421 4.39630 4.44148 4.68676 4.69443 4.76296 4.86299 5.09450 5.20055 5.32684 5.48983 5.65202 5.69984 5.97380 6.01498 6.17049 6.42466 6.59028 6.76277 7.09516 7.74563 8.27732 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.009773 C = 0.007499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.564817 B = 2864.309089 C = 3733.103121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.042 3.958 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.101 0.899 9 C 0.247 3.753 10 C -0.273 4.273 11 C -0.038 4.038 12 C -0.298 4.298 13 C 0.336 3.664 14 N -0.302 5.302 15 N -0.104 5.104 16 N -0.254 5.254 17 C -0.079 4.079 18 C 0.085 3.915 19 C 0.100 3.900 20 N -0.832 5.832 21 N -0.512 5.512 22 H 0.287 0.713 23 H 0.130 0.870 24 H 0.149 0.851 25 H 0.114 0.886 26 H 0.220 0.780 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.330 0.670 30 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 3.270 3.557 5.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.481 4.481 8 H 0.119 0.881 9 C 0.122 3.878 10 C -0.296 4.296 11 C -0.061 4.061 12 C -0.324 4.324 13 C 0.105 3.895 14 N -0.086 5.086 15 N -0.081 5.081 16 N -0.122 5.122 17 C -0.237 4.237 18 C -0.050 4.050 19 C -0.032 4.032 20 N -0.361 5.361 21 N -0.230 5.230 22 H 0.098 0.902 23 H 0.148 0.852 24 H 0.166 0.834 25 H 0.132 0.868 26 H 0.236 0.764 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.140 0.860 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.021 2.660 3.407 4.322 hybrid contribution 1.606 0.736 -0.545 1.849 sum 1.585 3.396 2.862 4.716 Atomic orbital electron populations 1.69950 1.08949 1.30121 1.28243 1.26814 0.95442 1.04223 0.91715 0.85148 0.79659 0.76149 0.78821 1.17807 1.19631 1.18854 1.19997 0.97429 0.90463 1.40194 0.88111 1.18691 0.86452 0.93763 0.88914 1.22127 1.02702 0.92886 1.11868 1.21188 0.92370 0.98894 0.93696 1.21043 0.98711 0.95310 1.17352 1.18294 0.82260 0.92298 0.96679 1.47946 1.09943 1.13882 1.36849 1.82002 0.90689 1.12240 1.23171 1.74179 1.18697 1.11128 1.08237 1.23435 0.96249 0.94982 1.09019 1.22617 0.94989 0.92548 0.94806 1.20851 0.99172 0.89513 0.93710 1.58867 1.34916 1.10925 1.31433 1.67715 1.10288 1.25979 1.18969 0.90247 0.85242 0.83363 0.86799 0.76353 0.88254 0.87393 0.86037 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -34.30 10.00 21.84 0.22 -34.09 16 2 C 0.04 1.80 5.41 85.29 0.46 2.26 16 3 Si 0.98 32.60 29.58 68.60 2.03 34.63 16 4 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 5 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 6 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 7 C -0.45 -20.82 9.11 23.47 0.21 -20.61 16 8 H 0.10 4.32 7.89 -2.90 -0.02 4.30 16 9 C 0.25 11.95 6.48 40.22 0.26 12.21 16 10 C -0.27 -11.67 9.83 22.86 0.22 -11.45 16 11 C -0.04 -1.50 10.15 22.40 0.23 -1.27 16 12 C -0.30 -13.20 9.78 22.69 0.22 -12.98 16 13 C 0.34 16.09 7.38 133.02 0.98 17.07 16 14 N -0.30 -13.81 3.81 -180.20 -0.69 -14.49 16 15 N -0.10 -4.73 13.43 37.02 0.50 -4.24 16 16 N -0.25 -10.59 12.33 -58.72 -0.72 -11.31 16 17 C -0.08 -2.89 11.78 83.70 0.99 -1.90 16 18 C 0.08 3.42 6.45 41.10 0.27 3.68 16 19 C 0.10 3.58 6.85 85.56 0.59 4.16 16 20 N -0.83 -26.97 9.61 -190.02 -1.83 -28.79 16 21 N -0.51 -25.08 5.93 -186.07 -1.10 -26.19 16 22 H 0.29 11.80 8.29 -92.71 -0.77 11.03 16 23 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 24 H 0.15 4.66 8.06 -2.91 -0.02 4.63 16 25 H 0.11 4.86 7.96 -2.91 -0.02 4.84 16 26 H 0.22 5.90 8.06 -2.91 -0.02 5.88 16 27 H 0.10 4.15 4.35 -2.39 -0.01 4.14 16 28 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 29 H 0.33 11.95 8.99 -89.70 -0.81 11.14 16 30 H 0.35 9.86 9.08 -89.69 -0.81 9.04 16 Total: -1.00 -56.10 268.11 2.42 -53.69 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -0.41 Total: 39.60 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 4.43 Total: -8.81 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -3.62 Total: -119.11 kcal Atomic # 14 Polarization: 32.60 SS G_CDS: 2.03 Total: 34.63 kcal Total: -56.10 2.42 -53.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169310266.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.101 kcal (2) G-P(sol) polarization free energy of solvation -56.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds