Wall clock time and date at job start Mon Mar 30 2020 18:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30520 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48508 * 109.47321 * 274.99688 * 3 2 1 5 5 H 1.48497 * 109.47156 * 34.99552 * 3 2 1 6 6 H 1.48502 * 109.47451 * 154.99799 * 3 2 1 7 7 C 1.40351 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99825 * 185.60477 * 7 2 1 9 9 C 1.41680 * 120.00097 * 5.61001 * 7 2 1 10 10 O 1.21855 * 119.99943 * 353.97718 * 9 7 2 11 11 C 1.47474 * 120.00058 * 173.97405 * 9 7 2 12 12 C 1.40041 * 120.07261 * 359.72834 * 11 9 7 13 13 C 1.36524 * 119.92682 * 179.71144 * 12 11 9 14 14 C 1.39452 * 120.07411 * 0.53654 * 13 12 11 15 15 N 1.38783 * 119.93111 * 179.73352 * 14 13 12 16 16 C 1.48534 * 110.99770 * 116.40329 * 15 14 13 17 17 C 1.54936 * 103.22776 * 159.72168 * 16 15 14 18 18 C 1.54598 * 102.92210 * 322.59081 * 17 16 15 19 19 C 1.47900 * 111.00466 * 233.80320 * 15 14 13 20 20 C 1.39448 * 120.14093 * 359.76383 * 14 13 12 21 21 C 1.36524 * 120.07007 * 359.94781 * 20 14 13 22 22 H 0.96996 * 120.00608 * 359.97438 * 1 2 3 23 23 H 1.08007 * 120.03547 * 359.96715 * 12 11 9 24 24 H 1.08010 * 119.96482 * 180.24968 * 13 12 11 25 25 H 1.08998 * 110.66867 * 278.15830 * 16 15 14 26 26 H 1.08996 * 110.66693 * 41.28721 * 16 15 14 27 27 H 1.08998 * 110.72934 * 204.22821 * 17 16 15 28 28 H 1.09004 * 110.72519 * 80.94613 * 17 16 15 29 29 H 1.09000 * 110.30116 * 263.03919 * 18 17 16 30 30 H 1.09002 * 110.30988 * 140.87511 * 18 17 16 31 31 H 1.09003 * 109.91136 * 333.50565 * 19 15 14 32 32 H 1.08994 * 109.92081 * 94.60767 * 19 15 14 33 33 H 1.08005 * 119.96735 * 179.97438 * 20 14 13 34 34 H 1.08011 * 120.03554 * 180.02562 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3811 2.1075 -1.3948 5 1 1.4934 2.6199 0.8029 6 1 3.5856 1.4121 0.5917 7 6 2.0070 -1.2154 -0.0005 8 1 3.0832 -1.2176 0.0908 9 6 1.3038 -2.4395 -0.1210 10 8 0.0853 -2.4453 -0.1137 11 6 2.0465 -3.7065 -0.2554 12 6 3.4468 -3.7009 -0.2697 13 6 4.1314 -4.8761 -0.3883 14 6 3.4377 -6.0801 -0.5063 15 7 4.1366 -7.2725 -0.6323 16 6 3.8800 -8.1648 0.5271 17 6 4.2697 -9.5649 -0.0100 18 6 3.7807 -9.5211 -1.4760 19 6 3.6919 -8.0241 -1.8259 20 6 2.0433 -6.0885 -0.4987 21 6 1.3528 -4.9173 -0.3745 22 1 -0.4851 0.8400 0.0004 23 1 3.9846 -2.7683 -0.1830 24 1 5.2115 -4.8729 -0.3954 25 1 4.5100 -7.8881 1.3724 26 1 2.8267 -8.1394 0.8064 27 1 3.7542 -10.3484 0.5453 28 1 5.3496 -9.7074 0.0322 29 1 2.7998 -9.9886 -1.5616 30 1 4.4969 -10.0204 -2.1287 31 1 2.6626 -7.7600 -2.0686 32 1 4.3423 -7.7980 -2.6707 33 1 1.5089 -7.0225 -0.5907 34 1 0.2728 -4.9244 -0.3682 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032911368.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:05:20 Heat of formation + Delta-G solvation = -10.166459 kcal Electronic energy + Delta-G solvation = -16927.444837 eV Core-core repulsion = 14210.916934 eV Total energy + Delta-G solvation = -2716.527903 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.92956 -37.77252 -35.95321 -32.76802 -32.20334 -30.53416 -28.90060 -28.51886 -26.39704 -23.17534 -21.93252 -21.00620 -20.69776 -19.47670 -17.10246 -16.63488 -15.88276 -15.53482 -14.43068 -14.29479 -14.00306 -13.84207 -13.22852 -12.99204 -12.92623 -12.58724 -12.30685 -12.12085 -11.47425 -11.44681 -11.36886 -11.22599 -11.12397 -10.85268 -10.75092 -10.62795 -10.36545 -10.04901 -9.00808 -8.42822 -8.38929 -7.74445 -7.50880 -6.34550 -4.93672 1.66696 2.12311 3.03232 3.11564 3.15173 3.96691 3.99415 4.06334 4.58914 4.62587 4.76696 4.89067 5.26885 5.41288 5.43592 5.54211 5.67530 5.68383 5.73371 5.77097 5.92049 5.93613 5.98978 6.07428 6.17760 6.21505 6.38655 6.70818 6.82455 7.00252 7.06237 7.22100 7.37853 7.39836 7.85007 8.01371 8.75557 8.80678 10.27401 10.49372 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.052908 B = 0.004752 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.093593 B = 5890.807315 C = 6196.165120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.383 3.617 10 O -0.543 6.543 11 C -0.100 4.100 12 C -0.091 4.091 13 C -0.106 4.106 14 C 0.057 3.943 15 N -0.480 5.480 16 C 0.038 3.962 17 C -0.123 4.123 18 C -0.131 4.131 19 C 0.035 3.965 20 C -0.160 4.160 21 C -0.087 4.087 22 H 0.274 0.726 23 H 0.132 0.868 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.341 -12.969 -1.125 15.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.545 4.545 8 H 0.094 0.906 9 C 0.279 3.721 10 O -0.434 6.434 11 C -0.101 4.101 12 C -0.110 4.110 13 C -0.125 4.125 14 C -0.037 4.037 15 N -0.201 5.201 16 C -0.088 4.088 17 C -0.161 4.161 18 C -0.169 4.169 19 C -0.092 4.092 20 C -0.180 4.180 21 C -0.106 4.106 22 H 0.086 0.914 23 H 0.150 0.850 24 H 0.138 0.862 25 H 0.100 0.900 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.138 -12.797 -1.163 15.210 hybrid contribution -0.325 0.563 -0.013 0.650 sum 7.814 -12.234 -1.176 14.564 Atomic orbital electron populations 1.69959 1.07619 1.28177 1.30465 1.26024 0.94637 1.01099 0.92710 0.86346 0.80571 0.80905 0.79079 1.19408 1.20115 1.18390 1.20955 0.95384 0.91768 1.46422 0.90614 1.18106 0.88474 0.85908 0.79580 1.90512 1.15056 1.88049 1.49749 1.21981 0.94301 0.97624 0.96220 1.21283 0.94094 0.97758 0.97874 1.20664 0.99489 0.91035 1.01293 1.18911 0.90325 0.91033 1.03428 1.62085 1.53247 1.02295 1.02456 1.23333 1.00071 0.91437 0.93991 1.22489 1.01648 0.96477 0.95514 1.22407 1.01395 0.96085 0.97015 1.23000 0.99953 0.92340 0.93860 1.21187 0.94345 0.98125 1.04364 1.21006 1.00403 0.91534 0.97653 0.91446 0.85021 0.86222 0.89966 0.93208 0.91134 0.90765 0.91576 0.91068 0.92942 0.90351 0.87314 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -21.11 11.75 55.57 0.65 -20.45 16 2 C 0.08 2.11 5.50 -17.31 -0.10 2.02 16 3 Si 0.91 19.16 29.56 -169.99 -5.03 14.14 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.51 -14.13 8.83 -37.47 -0.33 -14.46 16 8 H 0.08 1.88 6.05 -52.48 -0.32 1.56 16 9 C 0.38 10.94 6.90 -34.51 -0.24 10.70 16 10 O -0.54 -17.43 14.91 5.05 0.08 -17.36 16 11 C -0.10 -2.38 5.89 -104.78 -0.62 -3.00 16 12 C -0.09 -1.87 9.38 -39.52 -0.37 -2.24 16 13 C -0.11 -1.90 9.91 -39.75 -0.39 -2.30 16 14 C 0.06 0.99 4.86 -83.81 -0.41 0.58 16 15 N -0.48 -6.97 5.25 -167.11 -0.88 -7.85 16 16 C 0.04 0.47 6.42 -1.90 -0.01 0.46 16 17 C -0.12 -1.19 7.06 -24.87 -0.18 -1.36 16 18 C -0.13 -1.27 6.93 -25.37 -0.18 -1.45 16 19 C 0.04 0.44 6.47 -2.76 -0.02 0.42 16 20 C -0.16 -2.90 7.82 -39.75 -0.31 -3.21 16 21 C -0.09 -1.88 9.55 -39.52 -0.38 -2.26 16 22 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 23 H 0.13 2.58 6.21 -52.48 -0.33 2.26 16 24 H 0.12 1.89 8.06 -52.48 -0.42 1.46 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.65 7.03 -51.93 -0.37 0.28 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.70 6.24 -51.93 -0.32 0.38 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.11 1.73 7.01 -52.48 -0.37 1.36 16 34 H 0.12 2.74 7.65 -52.48 -0.40 2.34 16 LS Contribution 283.69 15.07 4.28 4.28 Total: -1.00 -31.87 283.69 -8.62 -40.48 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -4.19 Total: 2.86 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -3.52 Total: -16.10 kcal Atomic # 7 Polarization: -28.08 SS G_CDS: -0.22 Total: -28.30 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.08 Total: -17.36 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.87 -8.62 -40.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032911368.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.317 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds