Wall clock time and date at job start Mon Mar 30 2020 18:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46839 * 111.00092 * 45.78796 * 13 12 11 15 15 C 1.53039 * 109.52305 * 185.83868 * 14 13 12 16 16 C 1.53125 * 109.27890 * 300.81995 * 15 14 13 17 17 O 1.42901 * 109.57453 * 177.58778 * 16 15 14 18 18 C 1.53118 * 109.15877 * 57.65365 * 16 15 14 19 19 C 1.46852 * 110.99971 * 169.99744 * 13 12 11 20 20 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 22 22 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 25 25 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 26 26 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 27 27 H 1.09001 * 109.46400 * 305.85111 * 14 13 12 28 28 H 1.08995 * 109.46502 * 65.82322 * 14 13 12 29 29 H 1.08994 * 109.50793 * 180.87369 * 15 14 13 30 30 H 1.09003 * 109.50071 * 60.75960 * 15 14 13 31 31 H 1.08991 * 109.52310 * 297.74805 * 16 15 14 32 32 H 0.96706 * 113.99920 * 60.28305 * 17 16 15 33 33 H 1.08998 * 109.49987 * 182.40758 * 18 16 15 34 34 H 1.09004 * 109.50544 * 62.28642 * 18 16 15 35 35 H 1.09005 * 109.46090 * 294.18098 * 19 13 12 36 36 H 1.09009 * 109.46391 * 54.14781 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9790 -5.3243 0.0036 12 6 3.1510 -6.3078 0.0051 13 7 2.6357 -7.6835 0.0051 14 6 1.5569 -7.8414 -0.9785 15 6 0.9482 -9.2396 -0.8499 16 6 2.0377 -10.2891 -1.0867 17 8 1.4886 -11.5969 -0.9128 18 6 3.1715 -10.0723 -0.0807 19 6 3.7157 -8.6500 -0.2316 20 1 -0.4850 0.8401 -0.0004 21 1 3.1242 -3.7307 0.8928 22 1 3.1243 -3.7322 -0.8872 23 1 1.3701 -5.4839 0.8935 24 1 1.3706 -5.4849 -0.8864 25 1 3.7602 -6.1485 -0.8846 26 1 3.7591 -6.1471 0.8954 27 1 0.7868 -7.0919 -0.7963 28 1 1.9594 -7.7116 -1.9830 29 1 0.1579 -9.3620 -1.5904 30 1 0.5331 -9.3652 0.1502 31 1 2.4259 -10.1888 -2.1002 32 1 0.7638 -11.8029 -1.5189 33 1 3.9697 -10.7895 -0.2718 34 1 2.7914 -10.2110 0.9315 35 1 4.1083 -8.5163 -1.2397 36 1 4.5137 -8.4877 0.4932 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080632607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:07:00 Heat of formation + Delta-G solvation = -68.181250 kcal Electronic energy + Delta-G solvation = -15508.066343 eV Core-core repulsion = 12924.466681 eV Total energy + Delta-G solvation = -2583.599662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50480 -36.88420 -33.86907 -32.43115 -31.15045 -30.74316 -25.99922 -25.33413 -23.67736 -22.91136 -20.61892 -19.90706 -17.55148 -17.46066 -16.21675 -15.37820 -14.95767 -14.80636 -14.66253 -14.40801 -14.03230 -13.66478 -13.19213 -12.77489 -12.44771 -12.31406 -11.82640 -11.58207 -11.36681 -11.30946 -11.18290 -11.04862 -10.82045 -10.65338 -10.51300 -10.37354 -9.92441 -9.52683 -9.05136 -8.34028 -8.30805 -6.52974 -6.22687 -3.93037 3.21388 3.23218 3.27776 3.52982 3.85546 3.97639 4.22728 4.58622 4.61285 4.92370 4.99550 5.13206 5.15705 5.25102 5.31444 5.33094 5.44206 5.50317 5.57134 5.67419 5.69020 5.77405 5.85552 5.93140 5.95910 6.13514 6.14149 6.31460 6.57476 6.72281 7.05237 7.07048 7.39580 7.60250 8.36427 9.23453 10.85479 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.067497 B = 0.003629 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.732630 B = 7714.438816 C = 8024.041773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.113 4.113 11 C -0.101 4.101 12 C 0.060 3.940 13 N -0.539 5.539 14 C 0.048 3.952 15 C -0.148 4.148 16 C 0.102 3.898 17 O -0.569 6.569 18 C -0.108 4.108 19 C 0.058 3.942 20 H 0.268 0.732 21 H 0.061 0.939 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.032 0.968 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.376 0.624 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -18.360 -2.773 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.140 4.140 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.079 4.079 15 C -0.187 4.187 16 C 0.044 3.956 17 O -0.375 6.375 18 C -0.146 4.146 19 C -0.070 4.070 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.223 0.777 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.641 -18.545 -1.841 18.988 hybrid contribution 1.801 1.569 -1.290 2.714 sum 5.442 -16.976 -3.130 18.100 Atomic orbital electron populations 1.70014 1.05924 1.27430 1.47184 1.25013 0.95083 0.99079 0.94599 0.86222 0.79238 0.81212 0.78846 1.19959 1.20810 1.19917 1.22654 0.94488 0.90815 1.58592 0.91019 1.84604 1.09566 0.99419 1.96860 1.23232 1.02872 0.97292 1.02795 1.21449 0.97094 0.92328 1.03109 1.22196 0.97357 0.86509 1.00803 1.62004 1.10358 1.04294 1.49703 1.22186 0.95209 0.97226 0.93324 1.22329 0.98109 0.94771 1.03445 1.21888 0.93736 0.81979 0.98030 1.86508 1.54705 1.32924 1.63333 1.21526 0.97001 0.95798 1.00310 1.22041 0.93752 0.91342 0.99910 0.92252 0.92027 0.92346 0.90660 0.91403 0.94930 0.90531 0.88937 0.94903 0.91377 0.90113 0.93213 0.77664 0.91086 0.90235 0.94892 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.92 9.50 30.94 0.29 -14.63 16 8 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 9 S -0.13 -3.49 21.44 -107.50 -2.30 -5.79 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.10 -1.65 4.47 -26.73 -0.12 -1.77 16 12 C 0.06 0.82 5.27 -3.82 -0.02 0.80 16 13 N -0.54 -6.69 4.81 -234.67 -1.13 -7.82 16 14 C 0.05 0.56 4.85 -3.84 -0.02 0.54 16 15 C -0.15 -1.47 5.72 -26.65 -0.15 -1.63 16 16 C 0.10 0.99 3.54 -26.61 -0.09 0.89 16 17 O -0.57 -5.50 13.33 -35.23 -0.47 -5.96 16 18 C -0.11 -1.08 5.75 -26.65 -0.15 -1.24 16 19 C 0.06 0.60 5.42 -3.83 -0.02 0.58 16 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 22 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.07 1.10 6.21 -51.93 -0.32 0.78 16 25 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.17 5.81 -51.93 -0.30 0.86 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.38 2.06 9.09 45.56 0.41 2.47 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.79 8.12 -51.92 -0.42 0.37 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -31.79 302.33 -9.05 -40.85 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.25 Total: -0.47 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -0.17 Total: -16.57 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: -0.39 Total: -33.17 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.47 Total: -5.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -2.30 Total: -5.79 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.79 -9.05 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080632607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.336 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds