Wall clock time and date at job start Mon Mar 30 2020 18:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00307 * 2 1 4 4 H 1.48499 * 109.47282 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47200 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99995 * 3 2 1 7 7 C 1.38806 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99918 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00056 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00049 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.46901 * 180.02562 * 12 11 10 14 14 C 1.46839 * 111.00092 * 45.78796 * 13 12 11 15 15 C 1.53039 * 109.52305 * 185.83868 * 14 13 12 16 16 C 1.53125 * 109.27890 * 300.81995 * 15 14 13 17 17 O 1.42901 * 109.57453 * 177.58778 * 16 15 14 18 18 C 1.53118 * 109.15877 * 57.65365 * 16 15 14 19 19 C 1.46852 * 110.99971 * 169.99744 * 13 12 11 20 20 H 0.97010 * 119.99946 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47115 * 60.00094 * 10 9 7 22 22 H 1.09001 * 109.46925 * 300.00251 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99731 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99903 * 11 10 9 25 25 H 1.09001 * 109.47109 * 299.99380 * 12 11 10 26 26 H 1.09002 * 109.47508 * 59.99571 * 12 11 10 27 27 H 1.09001 * 109.46400 * 305.85111 * 14 13 12 28 28 H 1.08995 * 109.46502 * 65.82322 * 14 13 12 29 29 H 1.08994 * 109.50793 * 180.87369 * 15 14 13 30 30 H 1.09003 * 109.50071 * 60.75960 * 15 14 13 31 31 H 1.08991 * 109.52310 * 297.74805 * 16 15 14 32 32 H 0.96706 * 113.99920 * 60.28305 * 17 16 15 33 33 H 1.08998 * 109.49987 * 182.40758 * 18 16 15 34 34 H 1.09004 * 109.50544 * 62.28642 * 18 16 15 35 35 H 1.09005 * 109.46090 * 294.18098 * 19 13 12 36 36 H 1.09009 * 109.46391 * 54.14781 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0019 10 6 2.5156 -3.8915 0.0029 11 6 1.9790 -5.3243 0.0036 12 6 3.1510 -6.3078 0.0051 13 7 2.6357 -7.6835 0.0051 14 6 1.5569 -7.8414 -0.9785 15 6 0.9482 -9.2396 -0.8499 16 6 2.0377 -10.2891 -1.0867 17 8 1.4886 -11.5969 -0.9128 18 6 3.1715 -10.0723 -0.0807 19 6 3.7157 -8.6500 -0.2316 20 1 -0.4850 0.8401 -0.0004 21 1 3.1242 -3.7307 0.8928 22 1 3.1243 -3.7322 -0.8872 23 1 1.3701 -5.4839 0.8935 24 1 1.3706 -5.4849 -0.8864 25 1 3.7602 -6.1485 -0.8846 26 1 3.7591 -6.1471 0.8954 27 1 0.7868 -7.0919 -0.7963 28 1 1.9594 -7.7116 -1.9830 29 1 0.1579 -9.3620 -1.5904 30 1 0.5331 -9.3652 0.1502 31 1 2.4259 -10.1888 -2.1002 32 1 0.7638 -11.8029 -1.5189 33 1 3.9697 -10.7895 -0.2718 34 1 2.7914 -10.2110 0.9315 35 1 4.1083 -8.5163 -1.2397 36 1 4.5137 -8.4877 0.4932 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080632607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:06:59 Heat of formation + Delta-G solvation = -91.195690 kcal Electronic energy + Delta-G solvation = -15509.064324 eV Core-core repulsion = 12924.466681 eV Total energy + Delta-G solvation = -2584.597643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37734 -37.74328 -35.01563 -34.59682 -32.04699 -31.76620 -27.89542 -26.79393 -24.66570 -23.86921 -21.80389 -20.77887 -19.55304 -18.27154 -17.22327 -16.89849 -16.55071 -16.10762 -15.85013 -15.42643 -15.21447 -14.82967 -14.61257 -13.99932 -13.67028 -13.37797 -13.22703 -12.97616 -12.90990 -12.63043 -12.50134 -12.29935 -12.19506 -12.04653 -11.72332 -11.38990 -11.23479 -11.13666 -10.72345 -10.32150 -9.29021 -8.67369 -8.37710 -6.14225 1.31075 1.40700 1.47501 1.73679 2.28110 2.87909 2.96494 3.28880 3.32030 3.78394 3.80314 4.00708 4.06618 4.16918 4.26917 4.30185 4.39942 4.47049 4.54214 4.64861 4.70173 4.79110 4.83823 4.90317 4.93913 5.09650 5.15755 5.18087 5.25946 5.35240 5.38931 6.06503 6.14726 6.17383 6.88006 7.04320 8.71506 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.067497 B = 0.003629 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.732630 B = 7714.438816 C = 8024.041773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.073 0.927 9 S -0.198 6.198 10 C -0.088 4.088 11 C -0.089 4.089 12 C 0.070 3.930 13 N -0.549 5.549 14 C 0.047 3.953 15 C -0.142 4.142 16 C 0.105 3.895 17 O -0.583 6.583 18 C -0.107 4.107 19 C 0.059 3.941 20 H 0.272 0.728 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.394 0.606 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 -18.889 -3.274 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.688 4.688 8 H 0.091 0.909 9 S 0.031 5.969 10 C -0.237 4.237 11 C -0.127 4.127 12 C -0.059 4.059 13 N -0.274 5.274 14 C -0.081 4.081 15 C -0.180 4.180 16 C 0.046 3.954 17 O -0.392 6.392 18 C -0.145 4.145 19 C -0.069 4.069 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.013 -19.099 -2.350 19.885 hybrid contribution 1.356 1.619 -1.138 2.398 sum 6.368 -17.480 -3.487 18.928 Atomic orbital electron populations 1.70149 1.07704 1.28633 1.47896 1.26076 0.96040 1.03133 0.93717 0.85066 0.77942 0.76040 0.79376 1.18871 1.19954 1.18927 1.23024 0.94764 0.92035 1.59015 0.90888 1.84619 1.14078 1.01164 1.97044 1.23159 1.00154 0.97463 1.02955 1.21328 0.98082 0.90614 1.02718 1.22016 0.95869 0.86604 1.01391 1.62001 1.11226 1.03840 1.50359 1.22192 0.94719 0.97886 0.93331 1.22278 0.98678 0.93894 1.03180 1.21849 0.93371 0.81842 0.98349 1.86470 1.55663 1.32715 1.64320 1.21514 0.97575 0.95728 0.99718 1.22089 0.93284 0.90948 1.00575 0.91938 0.91838 0.91965 0.91607 0.91359 0.94245 0.90053 0.90428 0.94453 0.89628 0.91557 0.92162 0.75637 0.89943 0.91606 0.94127 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.05 13.22 21.65 0.29 -54.76 16 2 C 0.02 0.87 5.49 84.86 0.47 1.34 16 3 Si 0.99 43.95 29.55 68.60 2.03 45.98 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -31.43 9.50 67.96 0.65 -30.78 16 8 H 0.07 4.07 7.80 -2.91 -0.02 4.05 16 9 S -0.20 -10.59 21.44 -56.49 -1.21 -11.80 16 10 C -0.09 -3.52 5.67 71.98 0.41 -3.11 16 11 C -0.09 -2.85 4.47 30.59 0.14 -2.71 16 12 C 0.07 1.80 5.27 86.30 0.46 2.25 16 13 N -0.55 -12.82 4.81 -896.35 -4.31 -17.12 16 14 C 0.05 1.03 4.85 86.33 0.42 1.44 16 15 C -0.14 -2.61 5.72 30.65 0.18 -2.44 16 16 C 0.10 1.80 3.54 30.68 0.11 1.91 16 17 O -0.58 -10.10 13.33 -148.98 -1.99 -12.09 16 18 C -0.11 -1.95 5.75 30.64 0.18 -1.78 16 19 C 0.06 1.11 5.42 86.32 0.47 1.57 16 20 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 21 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 23 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.07 2.19 6.21 -2.39 -0.01 2.18 16 25 H 0.04 0.96 8.08 -2.39 -0.02 0.94 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.08 1.92 5.81 -2.39 -0.01 1.91 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.39 3.46 9.09 -74.05 -0.67 2.79 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.09 1.53 8.12 -2.38 -0.02 1.51 16 Total: -1.00 -67.97 302.33 -1.36 -69.33 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.37 Total: 12.76 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.46 Total: -32.29 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -4.02 Total: -71.89 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -1.99 Total: -12.09 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -10.59 SS G_CDS: -1.21 Total: -11.80 kcal Total: -67.97 -1.36 -69.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080632607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.868 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds