Wall clock time and date at job start Mon Mar 30 2020 18:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48499 * 109.46947 * 239.99844 * 3 2 1 5 5 H 1.48491 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46769 * 120.00294 * 3 2 1 7 7 C 1.40192 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00398 * 180.02562 * 7 2 1 9 9 C 1.40669 * 119.99822 * 359.97438 * 7 2 1 10 10 N 1.34092 * 120.58842 * 351.72122 * 9 7 2 11 11 C 1.31499 * 119.87244 * 180.02562 * 10 9 7 12 12 C 1.39089 * 121.16857 * 0.02562 * 11 10 9 13 13 N 1.31839 * 121.23865 * 359.97438 * 12 11 10 14 14 C 1.33178 * 120.01771 * 359.97438 * 13 12 11 15 15 C 1.47043 * 120.56441 * 179.97438 * 14 13 12 16 16 C 1.32206 * 117.90896 * 117.28516 * 15 14 13 17 17 C 1.50227 * 122.63950 * 175.60652 * 16 15 14 18 18 C 1.53285 * 110.41128 * 50.41349 * 17 16 15 19 19 N 1.46540 * 107.91017 * 267.27358 * 18 17 16 20 20 C 1.47017 * 111.29065 * 32.96234 * 19 18 17 21 21 C 1.50140 * 117.90326 * 297.02926 * 15 14 13 22 22 H 0.96997 * 119.99845 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.41374 * 179.71798 * 11 10 9 24 24 H 1.07996 * 119.38244 * 179.97438 * 12 11 10 25 25 H 1.07998 * 118.67531 * 355.63594 * 16 15 14 26 26 H 1.08999 * 109.31139 * 170.69853 * 17 16 15 27 27 H 1.08994 * 109.31486 * 290.31615 * 17 16 15 28 28 H 1.09002 * 109.77379 * 26.88180 * 18 17 16 29 29 H 1.08999 * 109.77391 * 147.66982 * 18 17 16 30 30 H 1.00895 * 110.99341 * 157.12462 * 19 18 17 31 31 H 1.08999 * 109.69115 * 180.02562 * 20 19 18 32 32 H 1.09000 * 109.69151 * 300.67025 * 20 19 18 33 33 H 1.09002 * 109.18233 * 330.22727 * 21 15 14 34 34 H 1.09004 * 109.18094 * 89.46772 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7464 0.0006 6 1 3.0946 1.6963 1.2126 7 6 2.0078 -1.2141 -0.0005 8 1 3.0878 -1.2141 -0.0001 9 6 1.3044 -2.4323 -0.0005 10 7 -0.0260 -2.4521 0.1662 11 6 -0.6693 -3.5990 0.1643 12 6 0.0059 -4.8028 -0.0078 13 7 1.3132 -4.8356 -0.1754 14 6 2.0126 -3.7023 -0.1826 15 6 3.4711 -3.7250 -0.3681 16 6 3.9684 -3.1270 -1.4372 17 6 5.4452 -3.0019 -1.6823 18 6 6.1298 -4.3649 -1.5295 19 7 6.5929 -4.4838 -0.1443 20 6 5.6875 -3.7893 0.7827 21 6 4.3009 -4.4207 0.6720 22 1 -0.4850 0.8400 0.0004 23 1 -1.7402 -3.6067 0.3038 24 1 -0.5512 -5.7280 -0.0041 25 1 3.2854 -2.7114 -2.1632 26 1 5.6125 -2.6256 -2.6915 27 1 5.8724 -2.3043 -0.9620 28 1 5.4192 -5.1613 -1.7505 29 1 6.9795 -4.4290 -2.2092 30 1 6.7055 -5.4517 0.1173 31 1 6.0559 -3.8938 1.8032 32 1 5.6297 -2.7336 0.5178 33 1 3.7974 -4.3526 1.6363 34 1 4.4104 -5.4704 0.3994 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238936708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:05:27 Heat of formation + Delta-G solvation = 56.812501 kcal Electronic energy + Delta-G solvation = -17684.670938 eV Core-core repulsion = 15003.340212 eV Total energy + Delta-G solvation = -2681.330726 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.15420 -38.14128 -34.14877 -33.47053 -31.81476 -31.19617 -29.50412 -26.43090 -25.58136 -24.57836 -22.09358 -21.76231 -19.87298 -18.09775 -17.63308 -16.30653 -16.04218 -15.08820 -14.84740 -14.69344 -14.24111 -13.68736 -13.23864 -12.70418 -12.46522 -12.38108 -12.12428 -11.94206 -11.55197 -11.41263 -11.36630 -10.93702 -10.84915 -10.57901 -10.38214 -10.03962 -9.83712 -9.57962 -9.14127 -8.19558 -8.17231 -7.61553 -7.34165 -6.58865 -4.73806 2.31282 2.77535 2.95945 2.98157 3.06811 3.27639 3.76172 4.50769 4.56890 5.22880 5.36203 5.40440 5.49071 5.58640 5.69661 5.82883 5.89481 5.98940 6.08628 6.16427 6.21283 6.32266 6.39620 6.41558 6.52123 6.60275 6.85873 6.99026 7.04756 7.20162 7.35815 7.58788 7.62859 7.79662 7.99161 8.32865 8.61637 9.23548 9.81072 10.01235 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.009952 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.524802 B = 2812.825601 C = 4002.593542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.063 3.937 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.095 0.905 9 C 0.223 3.777 10 N -0.465 5.465 11 C 0.088 3.912 12 C -0.135 4.135 13 N -0.416 5.416 14 C -0.034 4.034 15 C -0.012 4.012 16 C -0.168 4.168 17 C -0.092 4.092 18 C 0.060 3.940 19 N -0.693 5.693 20 C 0.050 3.950 21 C -0.105 4.105 22 H 0.280 0.720 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.336 0.664 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -1.831 -0.616 7.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.422 4.422 8 H 0.113 0.887 9 C 0.097 3.903 10 N -0.181 5.181 11 C -0.081 4.081 12 C -0.293 4.293 13 N -0.128 5.128 14 C -0.184 4.184 15 C -0.013 4.013 16 C -0.187 4.187 17 C -0.129 4.129 18 C -0.069 4.069 19 N -0.323 5.323 20 C -0.079 4.079 21 C -0.144 4.144 22 H 0.091 0.909 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.807 -1.150 -0.661 7.919 hybrid contribution -0.898 -0.015 0.006 0.898 sum 6.909 -1.166 -0.656 7.037 Atomic orbital electron populations 1.70039 1.07542 1.28882 1.25986 1.26253 0.95004 1.01677 0.93500 0.86283 0.80170 0.79600 0.80441 1.18394 1.19966 1.18447 1.19618 0.95081 0.88799 1.38748 0.88659 1.20420 0.88671 0.91819 0.89377 1.69534 1.07662 1.24326 1.16592 1.23353 0.99745 0.90405 0.94583 1.22332 0.91427 0.97560 1.18025 1.67834 1.07724 1.29972 1.07228 1.21614 0.93024 0.89980 1.13827 1.19119 0.90718 0.97359 0.94121 1.22518 0.95114 1.03019 0.98097 1.20746 0.93250 0.97023 1.01922 1.22061 0.97684 0.97220 0.89918 1.60606 1.50100 1.18944 1.02609 1.22282 0.89509 1.00233 0.95873 1.21044 0.95822 0.98872 0.98705 0.90873 0.85702 0.86016 0.87547 0.91616 0.89936 0.94335 0.91236 0.84748 0.90958 0.89332 0.91430 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.97 11.54 55.56 0.64 -17.33 16 2 C 0.06 1.53 5.50 -17.31 -0.10 1.44 16 3 Si 0.91 17.63 29.56 -169.99 -5.03 12.60 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.39 -9.94 8.42 -37.93 -0.32 -10.25 16 8 H 0.10 2.26 6.38 -52.48 -0.33 1.92 16 9 C 0.22 5.98 6.67 -82.61 -0.55 5.43 16 10 N -0.46 -12.72 8.12 -9.53 -0.08 -12.80 16 11 C 0.09 2.16 11.17 -17.38 -0.19 1.96 16 12 C -0.13 -3.20 11.17 -17.23 -0.19 -3.40 16 13 N -0.42 -10.43 10.46 -7.96 -0.08 -10.52 16 14 C -0.03 -0.84 6.10 -80.37 -0.49 -1.33 16 15 C -0.01 -0.24 4.54 -103.25 -0.47 -0.71 16 16 C -0.17 -3.22 7.50 -36.46 -0.27 -3.49 16 17 C -0.09 -1.41 5.45 -27.96 -0.15 -1.56 16 18 C 0.06 0.83 6.44 -3.87 -0.02 0.81 16 19 N -0.69 -9.32 6.83 -113.93 -0.78 -10.10 16 20 C 0.05 0.74 6.23 -3.88 -0.02 0.72 16 21 C -0.11 -1.86 5.27 -28.28 -0.15 -2.01 16 22 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 23 H 0.13 2.63 8.06 -52.48 -0.42 2.21 16 24 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 25 H 0.11 2.24 7.97 -52.49 -0.42 1.83 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.26 5.84 -51.93 -0.30 0.96 16 28 H 0.04 0.58 7.67 -51.93 -0.40 0.18 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.34 4.00 8.77 -39.29 -0.34 3.66 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.40 5.32 -51.93 -0.28 1.12 16 33 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 34 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 LS Contribution 278.97 15.07 4.20 4.20 Total: -1.00 -28.91 278.97 -8.20 -37.11 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.15 Total: 9.22 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.93 Total: -12.40 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.30 Total: -50.74 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.91 -8.20 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238936708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.921 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds