Wall clock time and date at job start Mon Mar 30 2020 18:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.71476 * 2 1 4 4 C 1.53326 * 109.68426 * 239.46248 * 2 1 3 5 5 C 1.52737 * 108.38198 * 170.36661 * 4 2 1 6 6 C 1.50628 * 110.58441 * 51.07108 * 5 4 2 7 7 C 1.38920 * 117.74398 * 162.70826 * 6 5 4 8 8 C 1.37936 * 120.54300 * 180.02562 * 7 6 5 9 9 C 1.38259 * 119.76861 * 359.47640 * 8 7 6 10 10 C 1.37928 * 119.77391 * 0.35191 * 9 8 7 11 11 C 1.37662 * 122.57232 * 342.42733 * 6 5 4 12 12 C 1.50628 * 122.56789 * 0.41152 * 11 6 5 13 13 H 1.09004 * 109.24349 * 102.72086 * 12 11 6 14 14 N 1.46901 * 109.26094 * 222.14801 * 12 11 6 15 15 C 1.46902 * 110.99967 * 58.84552 * 14 12 11 16 16 C 1.50703 * 109.46715 * 185.29907 * 15 14 12 17 17 H 1.08001 * 120.00234 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99849 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00210 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46914 * 90.00020 * 20 18 16 22 22 H 1.48499 * 109.47338 * 209.99727 * 20 18 16 23 23 H 1.48495 * 109.47000 * 330.00147 * 20 18 16 24 24 H 1.08997 * 109.47075 * 180.54114 * 1 2 3 25 25 H 1.09007 * 109.46547 * 300.53964 * 1 2 3 26 26 H 1.08995 * 109.47275 * 60.53424 * 1 2 3 27 27 H 1.08997 * 109.68259 * 50.63967 * 4 2 1 28 28 H 1.09002 * 109.71570 * 290.10643 * 4 2 1 29 29 H 1.09004 * 109.25105 * 290.79083 * 5 4 2 30 30 H 1.08995 * 109.25447 * 171.36153 * 5 4 2 31 31 H 1.08000 * 119.72547 * 359.79823 * 7 6 5 32 32 H 1.07997 * 120.10885 * 179.75380 * 8 7 6 33 33 H 1.08001 * 120.10968 * 180.33035 * 9 8 7 34 34 H 1.08002 * 119.72471 * 180.02562 * 10 9 8 35 35 H 1.00896 * 111.00055 * 294.88642 * 14 12 11 36 36 H 1.08996 * 109.46442 * 305.29316 * 15 14 12 37 37 H 1.08994 * 109.47375 * 65.29867 * 15 14 12 38 38 H 0.96993 * 119.99991 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0464 -0.7335 -1.2434 5 6 3.5542 -0.5105 -1.3427 6 6 4.2259 -0.8435 -0.0363 7 6 5.5994 -1.0514 -0.0499 8 6 6.2732 -1.3601 1.1134 9 6 5.5784 -1.4530 2.3051 10 6 4.2152 -1.2435 2.3213 11 6 3.5335 -0.9406 1.1495 12 6 2.0446 -0.7308 1.2386 13 1 1.5494 -1.6987 1.3164 14 7 1.7382 0.0667 2.4337 15 6 2.4206 1.3667 2.3882 16 6 2.1891 2.1010 3.6838 17 1 1.5942 1.6475 4.4627 18 6 2.7368 3.3518 3.8746 19 7 3.4617 3.9039 2.9262 20 14 2.4494 4.2623 5.4801 21 1 3.5248 3.9172 6.4443 22 1 2.4614 5.7258 5.2283 23 1 1.1335 3.8679 6.0441 24 1 -0.3633 -1.0276 0.0097 25 1 -0.3633 0.5222 0.8852 26 1 -0.3633 0.5055 -0.8947 27 1 1.5572 -0.3371 -2.1331 28 1 1.8381 -1.7998 -1.1544 29 1 3.7475 0.5333 -1.5904 30 1 3.9607 -1.1470 -2.1285 31 1 6.1435 -0.9743 -0.9797 32 1 7.3405 -1.5243 1.0941 33 1 6.1013 -1.6891 3.2201 34 1 3.6733 -1.3158 3.2527 35 1 1.9754 -0.4371 3.2751 36 1 3.4898 1.2109 2.2450 37 1 2.0251 1.9560 1.5610 38 1 3.8467 4.7840 3.0603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568990394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:36 Heat of formation + Delta-G solvation = 7.423066 kcal Electronic energy + Delta-G solvation = -18142.757065 eV Core-core repulsion = 15562.824996 eV Total energy + Delta-G solvation = -2579.932069 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99037 -36.61749 -34.58290 -32.55001 -31.23748 -30.15588 -28.49441 -26.67455 -24.94100 -22.89679 -22.29332 -21.26290 -20.60657 -18.52981 -16.70386 -16.14883 -15.23019 -14.94829 -14.56440 -14.29518 -13.94657 -13.42642 -13.37241 -12.82992 -12.66282 -12.58360 -12.03184 -11.91278 -11.61492 -11.45168 -11.30007 -11.04510 -10.83537 -10.76429 -10.65093 -10.23555 -9.99688 -9.87871 -9.71185 -9.07054 -8.48583 -8.29484 -8.09753 -7.30376 -5.99235 -4.00664 1.79663 1.80779 3.32642 3.38903 3.43042 4.16754 4.45547 4.96294 5.02843 5.13502 5.31939 5.35810 5.37057 5.44111 5.54044 5.54363 5.75291 5.83049 5.91768 6.01592 6.06577 6.12235 6.22113 6.26054 6.31449 6.35659 6.50651 6.56464 6.83534 6.87614 6.91336 6.97269 7.07889 7.36313 7.44134 7.57039 7.80889 8.18179 8.40486 8.65486 9.08839 9.63412 11.11664 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.008064 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.173852 B = 3471.391375 C = 4208.243928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.113 4.113 5 C -0.079 4.079 6 C -0.074 4.074 7 C -0.127 4.127 8 C -0.128 4.128 9 C -0.124 4.124 10 C -0.106 4.106 11 C -0.090 4.090 12 C 0.129 3.871 13 H 0.075 0.925 14 N -0.677 5.677 15 C 0.192 3.808 16 C -0.516 4.516 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.328 0.672 36 H -0.003 1.003 37 H 0.029 0.971 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -10.921 -7.169 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.116 4.116 6 C -0.075 4.075 7 C -0.145 4.145 8 C -0.146 4.146 9 C -0.142 4.142 10 C -0.125 4.125 11 C -0.092 4.092 12 C 0.019 3.981 13 H 0.093 0.907 14 N -0.306 5.306 15 C 0.065 3.935 16 C -0.555 4.555 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.015 0.985 37 H 0.047 0.953 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.599 -10.486 -7.446 12.875 hybrid contribution 1.124 0.466 1.142 1.669 sum 1.723 -10.020 -6.305 11.963 Atomic orbital electron populations 1.21662 0.94733 1.00829 1.01855 1.21160 0.96038 1.00474 0.92639 0.89882 1.21623 0.94656 1.00468 0.98333 1.20455 0.95451 1.01683 0.94005 1.19589 0.93411 0.99660 0.94811 1.21056 0.93973 1.01445 0.98037 1.20927 0.99211 1.01428 0.93023 1.20960 0.94439 1.01153 0.97663 1.21094 0.94587 0.99005 0.97791 1.20628 0.98214 0.97840 0.92502 1.20517 0.88059 0.96538 0.93036 0.90694 1.60984 1.61900 1.05889 1.01799 1.19608 0.92004 0.84462 0.97405 1.21213 1.31543 1.01767 1.00933 0.92235 1.24955 0.95233 0.97481 0.96729 1.69970 1.34267 1.16369 1.32811 0.86555 0.78557 0.78896 0.83737 1.20824 1.21284 1.19819 0.93725 0.91015 0.93801 0.91702 0.92123 0.90743 0.91458 0.86866 0.86771 0.86623 0.86418 0.85439 0.98526 0.95289 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.10 37.16 0.34 -1.73 16 2 C -0.08 -1.43 2.09 -90.59 -0.19 -1.62 16 3 H 0.08 1.68 6.12 -51.93 -0.32 1.37 16 4 C -0.11 -1.56 5.28 -26.70 -0.14 -1.70 16 5 C -0.08 -1.13 5.67 -28.05 -0.16 -1.29 16 6 C -0.07 -1.25 5.74 -104.62 -0.60 -1.85 16 7 C -0.13 -1.99 9.61 -39.44 -0.38 -2.37 16 8 C -0.13 -1.98 10.05 -39.68 -0.40 -2.37 16 9 C -0.12 -2.05 10.05 -39.69 -0.40 -2.45 16 10 C -0.11 -1.92 8.32 -39.45 -0.33 -2.25 16 11 C -0.09 -1.64 4.24 -104.62 -0.44 -2.08 16 12 C 0.13 2.32 2.38 -69.03 -0.16 2.16 16 13 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 14 N -0.68 -14.26 5.92 -109.40 -0.65 -14.90 16 15 C 0.19 4.97 4.64 -4.97 -0.02 4.94 16 16 C -0.52 -14.61 9.26 -34.44 -0.32 -14.93 16 17 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 31 H 0.11 1.48 8.05 -52.49 -0.42 1.06 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.12 2.07 6.59 -52.49 -0.35 1.72 16 35 H 0.33 6.67 7.09 -39.29 -0.28 6.39 16 36 H 0.00 -0.09 6.30 -51.93 -0.33 -0.41 16 37 H 0.03 0.82 6.45 -51.93 -0.33 0.49 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 299.59 15.07 4.51 4.51 Total: -1.00 -30.36 299.59 -9.50 -39.86 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.78 Total: 5.89 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -3.30 Total: -25.98 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.09 Total: -41.19 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.36 -9.50 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568990394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.288 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds