Wall clock time and date at job start Mon Mar 30 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.71476 * 2 1 4 4 C 1.53326 * 109.68426 * 239.46248 * 2 1 3 5 5 C 1.52737 * 108.38198 * 170.36661 * 4 2 1 6 6 C 1.50628 * 110.58441 * 51.07108 * 5 4 2 7 7 C 1.38920 * 117.74398 * 162.70826 * 6 5 4 8 8 C 1.37936 * 120.54300 * 180.02562 * 7 6 5 9 9 C 1.38259 * 119.76861 * 359.47640 * 8 7 6 10 10 C 1.37928 * 119.77391 * 0.35191 * 9 8 7 11 11 C 1.37662 * 122.57232 * 342.42733 * 6 5 4 12 12 C 1.50628 * 122.56789 * 0.41152 * 11 6 5 13 13 H 1.09004 * 109.24349 * 102.72086 * 12 11 6 14 14 N 1.46901 * 109.26094 * 222.14801 * 12 11 6 15 15 C 1.46902 * 110.99967 * 58.84552 * 14 12 11 16 16 C 1.50703 * 109.46715 * 185.29907 * 15 14 12 17 17 H 1.08001 * 120.00234 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99849 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00210 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46914 * 90.00020 * 20 18 16 22 22 H 1.48499 * 109.47338 * 209.99727 * 20 18 16 23 23 H 1.48495 * 109.47000 * 330.00147 * 20 18 16 24 24 H 1.08997 * 109.47075 * 180.54114 * 1 2 3 25 25 H 1.09007 * 109.46547 * 300.53964 * 1 2 3 26 26 H 1.08995 * 109.47275 * 60.53424 * 1 2 3 27 27 H 1.08997 * 109.68259 * 50.63967 * 4 2 1 28 28 H 1.09002 * 109.71570 * 290.10643 * 4 2 1 29 29 H 1.09004 * 109.25105 * 290.79083 * 5 4 2 30 30 H 1.08995 * 109.25447 * 171.36153 * 5 4 2 31 31 H 1.08000 * 119.72547 * 359.79823 * 7 6 5 32 32 H 1.07997 * 120.10885 * 179.75380 * 8 7 6 33 33 H 1.08001 * 120.10968 * 180.33035 * 9 8 7 34 34 H 1.08002 * 119.72471 * 180.02562 * 10 9 8 35 35 H 1.00896 * 111.00055 * 294.88642 * 14 12 11 36 36 H 1.08996 * 109.46442 * 305.29316 * 15 14 12 37 37 H 1.08994 * 109.47375 * 65.29867 * 15 14 12 38 38 H 0.96993 * 119.99991 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0464 -0.7335 -1.2434 5 6 3.5542 -0.5105 -1.3427 6 6 4.2259 -0.8435 -0.0363 7 6 5.5994 -1.0514 -0.0499 8 6 6.2732 -1.3601 1.1134 9 6 5.5784 -1.4530 2.3051 10 6 4.2152 -1.2435 2.3213 11 6 3.5335 -0.9406 1.1495 12 6 2.0446 -0.7308 1.2386 13 1 1.5494 -1.6987 1.3164 14 7 1.7382 0.0667 2.4337 15 6 2.4206 1.3667 2.3882 16 6 2.1891 2.1010 3.6838 17 1 1.5942 1.6475 4.4627 18 6 2.7368 3.3518 3.8746 19 7 3.4617 3.9039 2.9262 20 14 2.4494 4.2623 5.4801 21 1 3.5248 3.9172 6.4443 22 1 2.4614 5.7258 5.2283 23 1 1.1335 3.8679 6.0441 24 1 -0.3633 -1.0276 0.0097 25 1 -0.3633 0.5222 0.8852 26 1 -0.3633 0.5055 -0.8947 27 1 1.5572 -0.3371 -2.1331 28 1 1.8381 -1.7998 -1.1544 29 1 3.7475 0.5333 -1.5904 30 1 3.9607 -1.1470 -2.1285 31 1 6.1435 -0.9743 -0.9797 32 1 7.3405 -1.5243 1.0941 33 1 6.1013 -1.6891 3.2201 34 1 3.6733 -1.3158 3.2527 35 1 1.9754 -0.4371 3.2751 36 1 3.4898 1.2109 2.2450 37 1 2.0251 1.9560 1.5610 38 1 3.8467 4.7840 3.0603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568990394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:12:35 Heat of formation + Delta-G solvation = -10.235176 kcal Electronic energy + Delta-G solvation = -18143.522784 eV Core-core repulsion = 15562.824996 eV Total energy + Delta-G solvation = -2580.697788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 245.148 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.31430 -37.98438 -36.15517 -34.55023 -32.58181 -31.63333 -29.87857 -28.43472 -26.46842 -24.44441 -23.90485 -22.55579 -22.02823 -19.92147 -18.71564 -17.54718 -16.77005 -16.54882 -16.13236 -15.82530 -15.33647 -14.92112 -14.63643 -14.32741 -14.16218 -14.07420 -13.76353 -13.36418 -13.22716 -12.76534 -12.73788 -12.62300 -12.53744 -12.28746 -12.11309 -11.95257 -11.39529 -11.30522 -11.27795 -11.02789 -10.63746 -9.60423 -9.42466 -9.08785 -8.20836 -6.30799 0.51257 0.51643 1.38129 1.39608 1.51161 2.39085 2.87984 3.12670 3.59375 3.77236 3.83172 4.07802 4.09630 4.16468 4.23996 4.32833 4.55217 4.59828 4.61986 4.74088 4.82074 4.94840 4.98056 5.05226 5.10402 5.12674 5.24743 5.27892 5.32765 5.44674 5.54741 5.55252 5.60949 5.62991 5.68036 5.78160 6.07470 6.19095 6.48588 6.75314 6.94148 7.39219 8.90526 Molecular weight = 245.15amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.008064 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.173852 B = 3471.391375 C = 4208.243928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 H 0.039 0.961 4 C -0.104 4.104 5 C -0.079 4.079 6 C -0.090 4.090 7 C -0.133 4.133 8 C -0.130 4.130 9 C -0.137 4.137 10 C -0.131 4.131 11 C -0.114 4.114 12 C 0.129 3.871 13 H 0.093 0.907 14 N -0.674 5.674 15 C 0.220 3.780 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.264 1.264 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.331 0.669 36 H -0.032 1.032 37 H -0.003 1.003 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -11.895 -7.682 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 H 0.058 0.942 4 C -0.142 4.142 5 C -0.116 4.116 6 C -0.090 4.090 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.155 4.155 10 C -0.150 4.150 11 C -0.116 4.116 12 C 0.019 3.981 13 H 0.111 0.889 14 N -0.303 5.303 15 C 0.092 3.908 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.195 4.195 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.189 1.189 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.149 0.851 36 H -0.015 1.015 37 H 0.015 0.985 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.807 -11.485 -7.962 13.998 hybrid contribution 1.090 0.727 1.271 1.825 sum 1.897 -10.759 -6.690 12.811 Atomic orbital electron populations 1.21602 0.93644 1.02022 1.01203 1.21131 0.96952 0.98313 0.93973 0.94211 1.21587 0.94358 1.00999 0.97236 1.20525 0.95796 1.01637 0.93621 1.19988 0.94370 0.99288 0.95379 1.21468 0.93725 1.00484 0.99430 1.21341 1.00772 1.00189 0.92464 1.21274 0.94030 1.01056 0.99149 1.21233 0.95679 1.00377 0.97697 1.20705 0.98209 0.99252 0.93398 1.20629 0.88825 0.96742 0.91948 0.88892 1.60854 1.61140 1.04826 1.03459 1.19072 0.90200 0.86218 0.95311 1.21614 1.31579 1.02461 1.01827 0.92096 1.25881 0.94760 0.98397 1.00450 1.70108 1.35212 1.16823 1.35026 0.85428 0.78895 0.77412 0.79151 1.19887 1.20769 1.18863 0.91436 0.94042 0.92167 0.89561 0.90442 0.91846 0.88282 0.83995 0.83736 0.84897 0.87165 0.85116 1.01478 0.98450 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.10 71.98 0.65 -3.22 16 2 C -0.08 -2.88 2.09 -10.77 -0.02 -2.90 16 3 H 0.04 1.69 6.12 -2.38 -0.01 1.68 16 4 C -0.10 -2.67 5.28 30.62 0.16 -2.51 16 5 C -0.08 -2.13 5.67 29.74 0.17 -1.96 16 6 C -0.09 -2.96 5.74 -19.86 -0.11 -3.07 16 7 C -0.13 -3.94 9.61 22.36 0.21 -3.73 16 8 C -0.13 -3.80 10.05 22.20 0.22 -3.58 16 9 C -0.14 -4.48 10.05 22.20 0.22 -4.26 16 10 C -0.13 -4.85 8.32 22.36 0.19 -4.67 16 11 C -0.11 -4.19 4.24 -19.86 -0.08 -4.28 16 12 C 0.13 4.67 2.38 44.06 0.10 4.78 16 13 H 0.09 3.01 8.12 -2.38 -0.02 2.99 16 14 N -0.67 -29.41 5.92 -500.04 -2.96 -32.37 16 15 C 0.22 11.93 4.64 85.56 0.40 12.32 16 16 C -0.54 -31.20 9.26 25.60 0.24 -30.96 16 17 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 18 C 0.00 0.19 5.46 84.65 0.46 0.66 16 19 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 20 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.49 7.91 -2.38 -0.02 1.47 16 26 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.86 8.13 -2.39 -0.02 1.84 16 28 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 29 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.10 2.04 8.13 -2.39 -0.02 2.02 16 31 H 0.14 3.29 8.05 -2.91 -0.02 3.27 16 32 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 34 H 0.11 4.06 6.59 -2.91 -0.02 4.04 16 35 H 0.33 13.93 7.09 -89.70 -0.64 13.30 16 36 H -0.03 -1.93 6.30 -2.39 -0.02 -1.95 16 37 H 0.00 -0.15 6.45 -2.39 -0.02 -0.17 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.22 299.59 2.57 -64.65 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.40 Total: 25.10 kcal Atomic # 6 Polarization: -50.18 SS G_CDS: 2.81 Total: -47.37 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -2.68 Total: -89.72 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -67.22 2.57 -64.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568990394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.415 kcal (2) G-P(sol) polarization free energy of solvation -67.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds