Wall clock time and date at job start Mon Mar 30 2020 18:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48506 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46768 * 299.99486 * 3 2 1 6 6 H 1.48498 * 109.47283 * 59.99737 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.50700 * 109.46769 * 179.72341 * 12 11 9 14 14 N 1.31129 * 126.55239 * 89.71695 * 13 12 11 15 15 C 1.34499 * 105.61359 * 179.91464 * 14 13 12 16 16 C 1.50701 * 126.28561 * 180.12246 * 15 14 13 17 17 F 1.39905 * 109.46900 * 210.23496 * 16 15 14 18 18 F 1.39901 * 109.47286 * 330.23710 * 16 15 14 19 19 N 1.29948 * 107.42266 * 0.34375 * 15 14 13 20 20 O 1.21297 * 110.25259 * 359.77933 * 19 15 14 21 21 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 24 24 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 25 25 H 1.08999 * 109.47033 * 90.23728 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3964 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 6 2.1959 -6.0618 -0.0111 14 7 2.7074 -6.6570 1.0394 15 6 3.5204 -7.6122 0.5541 16 6 4.3444 -8.5788 1.3653 17 9 5.5022 -8.9146 0.6554 18 9 4.6987 -7.9837 2.5808 19 7 3.4686 -7.5454 -0.7426 20 8 2.7133 -6.6613 -1.0876 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6476 0.0002 23 1 0.5899 -4.9784 0.8842 24 1 0.5898 -4.9699 -0.8957 25 1 3.7621 -9.4798 1.5580 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330580708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:07:52 Heat of formation + Delta-G solvation = -65.604689 kcal Electronic energy + Delta-G solvation = -17079.476235 eV Core-core repulsion = 13539.629904 eV Total energy + Delta-G solvation = -3539.846331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.41670 -47.43517 -45.88340 -37.61630 -36.18491 -34.36183 -32.65515 -31.93685 -28.24165 -27.78959 -25.66876 -23.76960 -21.95735 -20.03092 -18.71076 -18.42178 -17.69833 -17.55501 -17.18940 -16.62317 -15.51376 -15.03636 -14.31136 -14.22578 -14.11944 -13.75766 -13.54295 -13.28696 -12.74726 -12.42175 -12.18453 -11.82464 -11.66550 -11.34196 -11.25677 -11.04110 -10.62584 -10.40517 -10.26790 -8.96805 -7.87936 -7.83841 -6.31963 -4.77813 0.80623 1.76306 2.51617 2.68000 3.08306 3.17221 3.21621 3.44501 3.55008 4.02446 4.26698 4.42556 4.46040 4.68496 4.75868 5.24075 5.46132 5.62501 5.88098 5.93298 7.32926 7.58395 7.78095 7.80094 8.16222 8.90202 9.24016 10.40931 10.60451 Molecular weight = 247.06amu Principal moments of inertia in cm(-1) A = 0.039854 B = 0.004534 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.399223 B = 6173.941449 C = 6468.443769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.557 3.443 10 O -0.575 6.575 11 N -0.763 5.763 12 C 0.222 3.778 13 C 0.201 3.799 14 N -0.450 5.450 15 C 0.083 3.917 16 C 0.380 3.620 17 F -0.183 7.183 18 F -0.175 7.175 19 N -0.349 5.349 20 O 0.100 5.900 21 H 0.270 0.730 22 H 0.385 0.615 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -13.650 0.952 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.363 3.637 10 O -0.457 6.457 11 N -0.422 5.422 12 C 0.095 3.905 13 C -0.020 4.020 14 N -0.183 5.183 15 C -0.191 4.191 16 C 0.325 3.675 17 F -0.164 7.164 18 F -0.156 7.156 19 N -0.052 5.052 20 O 0.035 5.965 21 H 0.081 0.919 22 H 0.217 0.783 23 H 0.121 0.879 24 H 0.112 0.888 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.826 -14.179 0.906 15.356 hybrid contribution 0.997 0.874 -0.025 1.326 sum 6.823 -13.305 0.880 14.978 Atomic orbital electron populations 1.70004 1.07086 1.27544 1.34631 1.25715 0.94690 1.00424 0.92491 0.86252 0.80477 0.81382 0.78318 1.18707 1.20052 1.20040 1.20859 0.93765 0.88802 1.54167 0.91096 1.18288 0.87235 0.81742 0.76452 1.90630 1.13847 1.86152 1.55043 1.46323 1.09003 1.03151 1.83771 1.19529 0.88450 0.77426 1.05081 1.29467 0.96090 0.97140 0.79279 1.71942 1.10554 1.07002 1.28836 1.26389 1.02263 1.00654 0.89803 1.19141 0.81385 0.91867 0.75126 1.93075 1.51705 1.92705 1.78926 1.93094 1.92619 1.85945 1.43980 1.74651 1.09265 1.06850 1.14426 1.85369 1.41653 1.33515 1.35999 0.91892 0.78252 0.87902 0.88780 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.95 11.83 55.55 0.66 -21.29 15 2 C 0.09 2.34 5.50 -17.37 -0.10 2.24 15 3 Si 0.91 19.46 29.56 -169.99 -5.02 14.43 15 4 H -0.26 -5.46 7.11 56.52 0.40 -5.05 15 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 6 H -0.28 -5.78 7.11 56.52 0.40 -5.37 15 7 C -0.54 -14.53 9.54 -35.63 -0.34 -14.87 15 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 9 C 0.56 14.84 7.75 -12.99 -0.10 14.74 15 10 O -0.57 -17.33 15.02 5.20 0.08 -17.26 15 11 N -0.76 -15.78 5.54 -62.90 -0.35 -16.12 15 12 C 0.22 3.73 6.30 -5.19 -0.03 3.70 15 13 C 0.20 3.03 7.88 -13.06 -0.10 2.93 15 14 N -0.45 -6.96 11.51 -9.87 -0.11 -7.07 15 15 C 0.08 1.15 7.71 -156.37 -1.21 -0.05 15 16 C 0.38 4.00 5.86 36.01 0.21 4.21 15 17 F -0.18 -2.13 17.28 2.25 0.04 -2.09 15 18 F -0.18 -2.16 17.29 2.25 0.04 -2.12 15 19 N -0.35 -5.10 12.10 30.90 0.37 -4.72 15 20 O 0.10 1.47 11.31 18.10 0.20 1.67 15 21 H 0.27 7.01 8.29 -40.82 -0.34 6.67 15 22 H 0.39 7.29 8.44 -40.82 -0.34 6.95 15 23 H 0.10 1.76 8.14 -51.93 -0.42 1.34 15 24 H 0.09 1.51 8.14 -51.93 -0.42 1.08 15 25 H 0.14 0.85 8.14 -51.93 -0.42 0.43 15 LS Contribution 252.30 15.07 3.80 3.80 Total: -1.00 -32.71 252.30 -3.12 -35.83 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -1.16 Total: 2.04 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -1.67 Total: 12.90 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.57 Total: -49.21 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.28 Total: -15.58 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.21 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.71 -3.12 -35.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330580708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.772 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds