Wall clock time and date at job start Mon Mar 30 2020 18:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39668 * 120.00092 * 2 1 4 4 C 1.38937 * 120.07590 * 359.97438 * 3 2 1 5 5 C 1.38077 * 119.92643 * 179.75289 * 4 3 2 6 6 C 1.38308 * 120.07281 * 0.27121 * 5 4 3 7 7 C 1.38259 * 120.15237 * 0.02562 * 6 5 4 8 8 C 1.38119 * 120.07550 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.04127 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47283 * 260.00152 * 9 8 7 11 11 C 1.36932 * 120.00123 * 89.99250 * 10 9 8 12 12 H 1.08005 * 120.00017 * 218.08704 * 11 10 9 13 13 C 1.38815 * 119.99877 * 38.09242 * 11 10 9 14 14 N 1.31614 * 119.99809 * 20.53730 * 13 11 10 15 15 Si 1.86803 * 119.99941 * 200.53722 * 13 11 10 16 16 H 1.48494 * 109.46952 * 59.99920 * 15 13 11 17 17 H 1.48497 * 109.46714 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46998 * 299.99876 * 15 13 11 19 19 C 1.46509 * 119.99662 * 269.99894 * 10 9 8 20 20 C 1.52998 * 117.49560 * 185.07296 * 19 10 9 21 21 C 1.52999 * 117.49482 * 116.41217 * 19 10 9 22 22 H 1.09005 * 109.46731 * 60.00655 * 1 2 3 23 23 H 1.09001 * 109.47439 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47308 * 300.00757 * 1 2 3 25 25 H 0.96997 * 119.99640 * 179.97438 * 2 1 3 26 26 H 1.07997 * 120.03622 * 0.02562 * 4 3 2 27 27 H 1.07999 * 119.96444 * 180.25590 * 5 4 3 28 28 H 1.08006 * 119.92619 * 179.97438 * 6 5 4 29 29 H 1.08007 * 119.96451 * 180.02562 * 7 6 5 30 30 H 1.09001 * 109.46939 * 19.99926 * 9 8 7 31 31 H 1.09000 * 109.47491 * 139.99988 * 9 8 7 32 32 H 0.97002 * 119.99893 * 174.95045 * 14 13 11 33 33 H 1.08999 * 115.54829 * 330.74232 * 19 10 9 34 34 H 1.09001 * 117.50031 * 359.97438 * 20 19 10 35 35 H 1.09000 * 117.49857 * 145.02397 * 20 19 10 36 36 H 1.09004 * 117.49883 * 214.97387 * 21 19 10 37 37 H 1.08998 * 117.50510 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4703 2.4137 -0.0005 5 6 2.1638 3.6077 0.0046 6 6 3.5469 3.6058 0.0047 7 6 4.2398 2.4094 -0.0010 8 6 3.5523 1.2114 -0.0062 9 6 4.3083 -0.0922 -0.0118 10 7 4.3459 -0.6291 -1.3743 11 6 5.3737 -0.2932 -2.2145 12 1 5.1799 -0.1219 -3.2632 13 6 6.6646 -0.1729 -1.7185 14 7 6.9895 -0.7521 -0.5822 15 14 7.9404 0.8111 -2.6637 16 1 7.4779 2.2151 -2.8046 17 1 9.2296 0.7867 -1.9271 18 1 8.1278 0.2141 -4.0105 19 6 3.2837 -1.5254 -1.8380 20 6 3.4402 -2.1467 -3.2273 21 6 2.4064 -1.0420 -2.9945 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 1.9500 -0.8400 0.0004 26 1 0.3903 2.4158 -0.0005 27 1 1.6257 4.5440 0.0084 28 1 4.0870 4.5411 0.0083 29 1 5.3198 2.4115 -0.0005 30 1 5.3260 0.0765 0.3405 31 1 3.8096 -0.8043 0.6457 32 1 7.9084 -0.7302 -0.2720 33 1 2.8098 -2.1316 -1.0660 34 1 4.3332 -1.8884 -3.7966 35 1 3.0688 -3.1616 -3.3695 36 1 1.3554 -1.3306 -2.9837 37 1 2.6191 -0.0571 -3.4102 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658354607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:09:43 Heat of formation + Delta-G solvation = 80.364232 kcal Electronic energy + Delta-G solvation = -18450.627378 eV Core-core repulsion = 15808.432364 eV Total energy + Delta-G solvation = -2642.195014 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.01432 -36.83460 -34.85000 -33.63305 -31.47523 -29.51799 -28.95977 -25.64138 -25.40606 -23.45536 -21.37090 -20.88160 -20.65339 -19.70357 -16.94274 -16.22932 -15.73987 -15.30628 -14.53996 -14.36539 -13.85724 -13.77664 -13.53542 -13.20859 -12.98976 -12.42442 -12.03039 -11.76814 -11.60438 -11.13218 -11.10930 -10.82481 -10.66310 -10.62287 -10.32985 -9.99809 -9.92776 -9.57704 -9.49991 -9.30060 -8.44878 -7.98765 -6.71398 -6.47813 -5.84167 -3.39146 2.20140 2.36398 3.35109 3.40879 3.44763 4.05908 4.40915 4.62512 4.94674 5.33009 5.37123 5.39441 5.55573 5.66676 5.70694 5.82098 5.85723 5.90340 6.05788 6.18198 6.19539 6.34505 6.47750 6.49411 6.54269 6.63820 6.78937 6.97117 7.07458 7.14245 7.22522 7.44903 7.51345 7.74412 7.80926 8.05147 8.30575 8.50289 9.13781 9.76043 10.33014 11.17334 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019355 B = 0.010281 C = 0.007694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.320381 B = 2722.900385 C = 3638.491489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.749 5.749 3 C 0.219 3.781 4 C -0.209 4.209 5 C -0.095 4.095 6 C -0.185 4.185 7 C -0.060 4.060 8 C -0.142 4.142 9 C 0.185 3.815 10 N -0.542 5.542 11 C -0.254 4.254 12 H 0.059 0.941 13 C 0.018 3.982 14 N -0.888 5.888 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.281 1.281 19 C 0.129 3.871 20 C -0.193 4.193 21 C -0.217 4.217 22 H 0.045 0.955 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.401 0.599 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.258 0.742 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 2.392 1.941 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.382 5.382 3 C 0.116 3.884 4 C -0.232 4.232 5 C -0.114 4.114 6 C -0.206 4.206 7 C -0.080 4.080 8 C -0.148 4.148 9 C 0.060 3.940 10 N -0.258 5.258 11 C -0.384 4.384 12 H 0.077 0.923 13 C -0.182 4.182 14 N -0.530 5.530 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.215 1.215 18 H -0.207 1.207 19 C 0.020 3.980 20 C -0.231 4.231 21 C -0.258 4.258 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.239 0.761 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.948 2.422 2.101 10.452 hybrid contribution 0.729 0.269 -0.725 1.063 sum -9.218 2.690 1.376 9.701 Atomic orbital electron populations 1.21368 0.81658 1.01314 1.00209 1.44560 1.04652 1.06058 1.82906 1.17684 0.90964 0.85739 0.93973 1.20427 0.98480 0.91578 1.12704 1.20617 0.94153 0.96511 1.00094 1.20793 0.94091 0.97493 1.08180 1.20825 0.99455 0.91385 0.96338 1.20650 0.91511 0.98471 1.04179 1.19850 1.00802 0.87687 0.85685 1.43317 1.22485 1.48631 1.11403 1.18836 0.85609 1.41817 0.92129 0.92329 1.25170 0.97079 0.98772 0.97224 1.69872 1.17834 1.43046 1.22287 0.86465 0.80578 0.80927 0.79471 1.20585 1.21512 1.20723 1.21004 0.93611 0.94804 0.88616 1.23078 1.01372 0.95841 1.02834 1.23322 0.94542 0.98585 1.09366 0.93682 0.91743 0.93863 0.76138 0.87458 0.87593 0.87634 0.86663 0.87664 0.95430 0.93212 0.90535 0.88250 0.90801 0.91273 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.24 9.94 59.85 0.60 1.84 16 2 N -0.75 -12.21 5.41 -65.39 -0.35 -12.57 16 3 C 0.22 4.13 6.63 -83.79 -0.56 3.57 16 4 C -0.21 -3.60 9.31 -39.38 -0.37 -3.97 16 5 C -0.09 -1.59 10.04 -39.61 -0.40 -1.99 16 6 C -0.19 -3.37 10.04 -39.55 -0.40 -3.77 16 7 C -0.06 -1.25 9.66 -39.62 -0.38 -1.63 16 8 C -0.14 -2.99 5.48 -104.42 -0.57 -3.57 16 9 C 0.19 4.26 5.01 -5.19 -0.03 4.24 16 10 N -0.54 -13.04 2.74 -167.02 -0.46 -13.50 16 11 C -0.25 -6.75 8.30 -15.06 -0.13 -6.88 16 12 H 0.06 1.60 7.04 -52.48 -0.37 1.23 16 13 C 0.02 0.48 4.97 -17.43 -0.09 0.40 16 14 N -0.89 -24.64 11.45 55.49 0.64 -24.00 16 15 Si 0.90 21.34 29.60 -169.99 -5.03 16.31 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 C 0.13 2.68 5.02 -67.93 -0.34 2.34 16 20 C -0.19 -3.83 9.78 -26.69 -0.26 -4.09 16 21 C -0.22 -4.16 10.33 -26.69 -0.28 -4.44 16 22 H 0.04 0.56 7.95 -51.93 -0.41 0.15 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.50 7.95 -51.93 -0.41 0.09 16 25 H 0.40 6.78 4.49 -40.82 -0.18 6.60 16 26 H 0.11 1.61 6.74 -52.49 -0.35 1.25 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 29 H 0.12 2.48 8.04 -52.48 -0.42 2.06 16 30 H 0.11 2.73 5.38 -51.93 -0.28 2.45 16 31 H 0.03 0.60 7.00 -51.93 -0.36 0.24 16 32 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 33 H 0.08 1.47 6.96 -51.93 -0.36 1.10 16 34 H 0.10 2.18 6.64 -51.93 -0.34 1.84 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -28.06 300.25 -9.05 -37.11 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.17 Total: 10.08 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -3.19 Total: -17.95 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.18 Total: -50.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.06 -9.05 -37.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658354607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.472 kcal (2) G-P(sol) polarization free energy of solvation -28.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds