Wall clock time and date at job start Mon Mar 30 2020 18:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86803 * 119.99693 * 2 1 4 4 H 1.48502 * 109.47268 * 239.99874 * 3 2 1 5 5 H 1.48494 * 109.47378 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46691 * 120.00466 * 3 2 1 7 7 C 1.39872 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99527 * 195.06036 * 7 2 1 9 9 C 1.41195 * 120.00234 * 15.05167 * 7 2 1 10 10 C 1.41327 * 120.56947 * 23.95016 * 9 7 2 11 11 C 1.36569 * 118.40697 * 179.76631 * 10 9 7 12 12 C 1.39698 * 119.49162 * 0.50030 * 11 10 9 13 13 N 1.38375 * 119.43190 * 179.76339 * 12 11 10 14 14 C 1.46507 * 119.99491 * 5.99212 * 13 12 11 15 15 C 1.50695 * 115.55429 * 65.36374 * 14 13 12 16 16 N 1.34779 * 119.99924 * 12.29726 * 15 14 13 17 17 O 1.21274 * 120.00170 * 192.03009 * 15 14 13 18 18 C 1.52996 * 117.51445 * 211.06632 * 14 13 12 19 19 C 1.52993 * 60.00256 * 107.48086 * 18 14 13 20 20 N 1.32746 * 121.14204 * 359.48569 * 12 11 10 21 21 C 1.31480 * 121.72906 * 0.25963 * 20 12 11 22 22 H 0.97001 * 120.00197 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.79642 * 0.04426 * 10 9 7 24 24 H 1.08002 * 120.25033 * 180.26460 * 11 10 9 25 25 H 0.96991 * 120.00626 * 185.99009 * 13 12 11 26 26 H 0.96995 * 120.00303 * 174.75529 * 16 15 14 27 27 H 0.97006 * 119.99580 * 354.76056 * 16 15 14 28 28 H 1.09002 * 117.49740 * 214.96893 * 18 14 13 29 29 H 1.09004 * 117.50579 * 359.97438 * 18 14 13 30 30 H 1.09007 * 117.49642 * 252.51047 * 19 18 14 31 31 H 1.08995 * 117.52570 * 107.48062 * 19 18 14 32 32 H 1.07998 * 119.81613 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0606 -1.2274 0.2425 9 6 1.3388 -2.4130 -0.3186 10 6 0.1624 -2.3948 -1.1017 11 6 -0.4467 -3.5834 -1.3869 12 6 0.0981 -4.7713 -0.8931 13 7 -0.5228 -5.9744 -1.1787 14 6 -1.6625 -6.0103 -2.0986 15 6 -1.3573 -5.6381 -3.5266 16 7 -0.0778 -5.5442 -3.9397 17 8 -2.2629 -5.4277 -4.3053 18 6 -2.7300 -7.0801 -1.8601 19 6 -3.0318 -5.6142 -1.5426 20 7 1.2042 -4.7663 -0.1591 21 6 1.8311 -3.6497 0.1391 22 1 -0.4850 0.8400 0.0004 23 1 -0.2426 -1.4637 -1.4696 24 1 -1.3448 -3.6045 -1.9864 25 1 -0.2036 -6.7941 -0.7700 26 1 0.1190 -5.3798 -4.8752 27 1 0.6463 -5.6413 -3.3015 28 1 -3.2114 -7.5147 -2.7361 29 1 -2.5843 -7.7578 -1.0189 30 1 -3.0848 -5.3273 -0.4923 31 1 -3.7116 -5.0840 -2.2095 32 1 2.7290 -3.6816 0.7383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162540767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:07:51 Heat of formation + Delta-G solvation = 21.207481 kcal Electronic energy + Delta-G solvation = -17585.449130 eV Core-core repulsion = 14739.429881 eV Total energy + Delta-G solvation = -2846.019249 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00222 -38.33602 -36.52354 -34.27709 -33.45588 -32.06620 -30.60828 -28.88383 -25.11444 -24.00517 -22.63284 -21.60338 -21.15694 -19.33704 -17.44408 -17.33357 -16.85819 -16.39759 -15.17326 -14.99125 -14.56348 -14.25703 -14.04354 -13.66890 -12.88323 -12.81325 -12.71487 -11.89913 -11.64352 -11.40281 -11.35101 -11.10462 -10.93989 -10.67074 -10.50664 -9.96570 -9.82792 -9.45197 -9.38314 -8.81357 -8.31109 -8.11467 -6.94888 -6.69474 -4.29030 2.64400 2.68035 2.94207 3.05192 3.07487 3.20945 3.62074 3.75734 3.90921 4.09166 4.62492 4.96244 5.03465 5.05744 5.60285 5.63037 5.71727 6.03000 6.04557 6.22773 6.41988 6.57967 6.78489 6.98987 7.10525 7.25530 7.30928 7.57576 7.70122 7.85251 8.12766 8.32432 8.51019 8.55188 8.77074 8.82180 9.60311 10.16600 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.005961 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.678146 B = 4696.406525 C = 4898.894919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.078 0.922 9 C 0.035 3.965 10 C -0.096 4.096 11 C -0.188 4.188 12 C 0.261 3.739 13 N -0.710 5.710 14 C 0.089 3.911 15 C 0.554 3.446 16 N -0.840 5.840 17 O -0.556 6.556 18 C -0.146 4.146 19 C -0.152 4.152 20 N -0.514 5.514 21 C 0.005 3.995 22 H 0.281 0.719 23 H 0.130 0.870 24 H 0.096 0.904 25 H 0.395 0.605 26 H 0.397 0.603 27 H 0.409 0.591 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -7.479 -3.344 8.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.030 3.970 10 C -0.123 4.123 11 C -0.212 4.212 12 C 0.030 3.970 13 N -0.350 5.350 14 C -0.005 4.005 15 C 0.337 3.663 16 N -0.402 5.402 17 O -0.434 6.434 18 C -0.184 4.184 19 C -0.191 4.191 20 N -0.228 5.228 21 C -0.153 4.153 22 H 0.092 0.908 23 H 0.148 0.852 24 H 0.114 0.886 25 H 0.231 0.769 26 H 0.227 0.773 27 H 0.239 0.761 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.485 -7.878 -3.471 8.960 hybrid contribution 0.626 1.449 -0.097 1.582 sum -1.858 -6.428 -3.568 7.583 Atomic orbital electron populations 1.69787 1.07500 1.29293 1.36292 1.25891 0.94782 1.01329 0.92447 0.86320 0.80018 0.80188 0.79914 1.18921 1.20404 1.19010 1.19342 0.97074 0.90668 1.41353 0.90346 1.18397 0.93237 0.93636 0.91734 1.21391 0.97012 0.96599 0.97305 1.20837 1.01537 0.92725 1.06071 1.17643 0.92989 0.84813 1.01551 1.42861 1.33816 1.07057 1.51291 1.20091 0.84926 1.07672 0.87783 1.19814 0.82857 0.75190 0.88431 1.43702 1.08284 1.74838 1.13417 1.90702 1.45819 1.51242 1.55667 1.23229 0.98691 0.92640 1.03806 1.23410 0.96171 0.96709 1.02838 1.66481 1.07911 1.32632 1.15822 1.22162 1.01459 0.87259 1.04433 0.90814 0.85246 0.88638 0.76942 0.77276 0.76076 0.87527 0.87624 0.87485 0.87445 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.34 10.79 55.54 0.60 -19.74 16 2 C 0.07 1.76 5.22 -17.34 -0.09 1.67 16 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.45 -11.57 9.08 -37.85 -0.34 -11.91 16 8 H 0.08 1.90 7.89 -52.49 -0.41 1.49 16 9 C 0.04 0.90 5.60 -106.65 -0.60 0.30 16 10 C -0.10 -2.43 8.74 -39.01 -0.34 -2.77 16 11 C -0.19 -4.26 8.78 -39.64 -0.35 -4.61 16 12 C 0.26 5.50 6.59 -155.12 -1.02 4.48 16 13 N -0.71 -11.90 4.96 -48.74 -0.24 -12.14 16 14 C 0.09 1.38 1.76 -132.97 -0.23 1.15 16 15 C 0.55 9.31 6.44 -10.99 -0.07 9.24 16 16 N -0.84 -12.34 8.74 31.22 0.27 -12.07 16 17 O -0.56 -10.70 17.25 5.56 0.10 -10.61 16 18 C -0.15 -1.78 10.09 -26.74 -0.27 -2.05 16 19 C -0.15 -2.22 9.33 -26.73 -0.25 -2.47 16 20 N -0.51 -11.65 10.38 -11.79 -0.12 -11.78 16 21 C 0.01 0.13 10.97 -16.75 -0.18 -0.06 16 22 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 23 H 0.13 3.40 6.11 -52.49 -0.32 3.08 16 24 H 0.10 2.10 5.86 -52.49 -0.31 1.79 16 25 H 0.40 6.04 8.95 -40.82 -0.37 5.67 16 26 H 0.40 5.03 8.93 -40.82 -0.36 4.66 16 27 H 0.41 6.13 7.28 -40.82 -0.30 5.83 16 28 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.11 1.59 8.14 -51.92 -0.42 1.17 16 31 H 0.11 1.60 7.85 -51.93 -0.41 1.19 16 32 H 0.13 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 279.28 15.07 4.21 4.21 Total: -1.00 -28.46 279.28 -7.27 -35.73 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -3.30 Total: 20.14 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.75 Total: -7.02 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.51 Total: -55.73 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.10 Total: -10.61 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.46 -7.27 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162540767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.939 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds