Wall clock time and date at job start Mon Mar 30 2020 18:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86803 * 119.99693 * 2 1 4 4 H 1.48502 * 109.47268 * 239.99874 * 3 2 1 5 5 H 1.48494 * 109.47378 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46691 * 120.00466 * 3 2 1 7 7 C 1.39872 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99527 * 195.06036 * 7 2 1 9 9 C 1.41195 * 120.00234 * 15.05167 * 7 2 1 10 10 C 1.41327 * 120.56947 * 23.95016 * 9 7 2 11 11 C 1.36569 * 118.40697 * 179.76631 * 10 9 7 12 12 C 1.39698 * 119.49162 * 0.50030 * 11 10 9 13 13 N 1.38375 * 119.43190 * 179.76339 * 12 11 10 14 14 C 1.46507 * 119.99491 * 5.99212 * 13 12 11 15 15 C 1.50695 * 115.55429 * 65.36374 * 14 13 12 16 16 N 1.34779 * 119.99924 * 12.29726 * 15 14 13 17 17 O 1.21274 * 120.00170 * 192.03009 * 15 14 13 18 18 C 1.52996 * 117.51445 * 211.06632 * 14 13 12 19 19 C 1.52993 * 60.00256 * 107.48086 * 18 14 13 20 20 N 1.32746 * 121.14204 * 359.48569 * 12 11 10 21 21 C 1.31480 * 121.72906 * 0.25963 * 20 12 11 22 22 H 0.97001 * 120.00197 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.79642 * 0.04426 * 10 9 7 24 24 H 1.08002 * 120.25033 * 180.26460 * 11 10 9 25 25 H 0.96991 * 120.00626 * 185.99009 * 13 12 11 26 26 H 0.96995 * 120.00303 * 174.75529 * 16 15 14 27 27 H 0.97006 * 119.99580 * 354.76056 * 16 15 14 28 28 H 1.09002 * 117.49740 * 214.96893 * 18 14 13 29 29 H 1.09004 * 117.50579 * 359.97438 * 18 14 13 30 30 H 1.09007 * 117.49642 * 252.51047 * 19 18 14 31 31 H 1.08995 * 117.52570 * 107.48062 * 19 18 14 32 32 H 1.07998 * 119.81613 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2125 5 1 1.2779 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0084 -1.2113 -0.0005 8 1 3.0606 -1.2274 0.2425 9 6 1.3388 -2.4130 -0.3186 10 6 0.1624 -2.3948 -1.1017 11 6 -0.4467 -3.5834 -1.3869 12 6 0.0981 -4.7713 -0.8931 13 7 -0.5228 -5.9744 -1.1787 14 6 -1.6625 -6.0103 -2.0986 15 6 -1.3573 -5.6381 -3.5266 16 7 -0.0778 -5.5442 -3.9397 17 8 -2.2629 -5.4277 -4.3053 18 6 -2.7300 -7.0801 -1.8601 19 6 -3.0318 -5.6142 -1.5426 20 7 1.2042 -4.7663 -0.1591 21 6 1.8311 -3.6497 0.1391 22 1 -0.4850 0.8400 0.0004 23 1 -0.2426 -1.4637 -1.4696 24 1 -1.3448 -3.6045 -1.9864 25 1 -0.2036 -6.7941 -0.7700 26 1 0.1190 -5.3798 -4.8752 27 1 0.6463 -5.6413 -3.3015 28 1 -3.2114 -7.5147 -2.7361 29 1 -2.5843 -7.7578 -1.0189 30 1 -3.0848 -5.3273 -0.4923 31 1 -3.7116 -5.0840 -2.2095 32 1 2.7290 -3.6816 0.7383 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162540767.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:07:51 Heat of formation + Delta-G solvation = 0.880906 kcal Electronic energy + Delta-G solvation = -17586.330557 eV Core-core repulsion = 14739.429881 eV Total energy + Delta-G solvation = -2846.900675 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37597 -40.05793 -37.87620 -35.98364 -34.84367 -33.59954 -32.45803 -30.64528 -26.85265 -25.38296 -24.03495 -23.14136 -22.88002 -20.67809 -19.20490 -18.81844 -18.15964 -18.00774 -16.87949 -16.51994 -15.93017 -15.65909 -15.47001 -15.31471 -14.58437 -14.50801 -14.09913 -13.62832 -13.49986 -13.12707 -12.77567 -12.45867 -12.34812 -12.08673 -11.95696 -11.64500 -11.23630 -11.14213 -10.70788 -10.40647 -10.17367 -9.96425 -8.71763 -8.46153 -6.17445 0.86639 1.09613 1.37879 1.41534 1.52069 1.56875 2.22128 2.26204 2.50050 2.79794 2.91853 3.69648 3.83027 3.87509 3.92073 4.22327 4.43619 4.65049 4.66442 4.81354 4.92228 4.94457 5.16370 5.26116 5.39003 5.51579 5.79450 5.87464 5.97686 6.27455 6.45486 6.55594 6.80366 6.90935 7.08271 7.24002 7.79229 8.37264 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.005961 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.678146 B = 4696.406525 C = 4898.894919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.005 3.995 10 C -0.112 4.112 11 C -0.190 4.190 12 C 0.283 3.717 13 N -0.692 5.692 14 C 0.064 3.936 15 C 0.548 3.452 16 N -0.832 5.832 17 O -0.585 6.585 18 C -0.106 4.106 19 C -0.161 4.161 20 N -0.519 5.519 21 C 0.001 3.999 22 H 0.286 0.714 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.408 0.592 26 H 0.406 0.594 27 H 0.409 0.591 28 H 0.119 0.881 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 -8.625 -3.248 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.000 4.000 10 C -0.139 4.139 11 C -0.214 4.214 12 C 0.050 3.950 13 N -0.333 5.333 14 C -0.029 4.029 15 C 0.333 3.667 16 N -0.393 5.393 17 O -0.465 6.465 18 C -0.144 4.144 19 C -0.201 4.201 20 N -0.234 5.234 21 C -0.157 4.157 22 H 0.096 0.904 23 H 0.129 0.871 24 H 0.118 0.882 25 H 0.245 0.755 26 H 0.238 0.762 27 H 0.239 0.761 28 H 0.138 0.862 29 H 0.152 0.848 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.452 -9.072 -3.381 9.987 hybrid contribution 0.542 1.636 -0.172 1.732 sum -1.909 -7.436 -3.554 8.460 Atomic orbital electron populations 1.69857 1.08914 1.30339 1.37288 1.26712 0.95483 1.04467 0.91552 0.85239 0.78630 0.75758 0.80020 1.18596 1.19779 1.18284 1.19601 0.97457 0.91602 1.43026 0.90032 1.18658 0.93971 0.94592 0.92827 1.21339 0.97622 0.96832 0.98108 1.20840 1.01588 0.92648 1.06291 1.17817 0.92000 0.85927 0.99296 1.42766 1.33669 1.05909 1.50913 1.20271 0.84803 1.11098 0.86739 1.20045 0.82984 0.74881 0.88837 1.43651 1.07721 1.73884 1.14059 1.90691 1.46587 1.52755 1.56495 1.23405 0.94620 0.91442 1.04918 1.23407 0.95121 0.99160 1.02391 1.66604 1.08423 1.31922 1.16465 1.22376 1.01883 0.87167 1.04256 0.90392 0.87100 0.88185 0.75502 0.76210 0.76089 0.86237 0.84795 0.87790 0.88104 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.39 10.79 21.82 0.24 -43.16 16 2 C 0.03 1.54 5.22 85.23 0.45 1.98 16 3 Si 0.98 37.68 29.59 68.60 2.03 39.70 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.49 -25.26 9.08 23.39 0.21 -25.05 16 8 H 0.08 4.01 7.89 -2.91 -0.02 3.99 16 9 C 0.00 0.24 5.60 -21.18 -0.12 0.12 16 10 C -0.11 -5.78 8.74 22.64 0.20 -5.58 16 11 C -0.19 -8.58 8.78 22.23 0.20 -8.39 16 12 C 0.28 11.57 6.59 133.31 0.88 12.44 16 13 N -0.69 -21.56 4.96 -308.12 -1.53 -23.09 16 14 C 0.06 1.85 1.76 2.85 0.01 1.85 16 15 C 0.55 17.63 6.44 87.65 0.56 18.19 16 16 N -0.83 -23.34 8.74 -173.54 -1.52 -24.86 16 17 O -0.58 -21.90 17.25 -3.01 -0.05 -21.95 16 18 C -0.11 -2.21 10.09 30.59 0.31 -1.90 16 19 C -0.16 -4.39 9.33 30.59 0.29 -4.11 16 20 N -0.52 -22.95 10.38 -191.21 -1.98 -24.93 16 21 C 0.00 0.04 10.97 85.36 0.94 0.97 16 22 H 0.29 13.57 8.30 -92.71 -0.77 12.81 16 23 H 0.11 6.07 6.11 -2.91 -0.02 6.05 16 24 H 0.10 4.39 5.86 -2.91 -0.02 4.38 16 25 H 0.41 11.13 8.95 -92.72 -0.83 10.30 16 26 H 0.41 9.84 8.93 -92.71 -0.83 9.02 16 27 H 0.41 11.64 7.28 -92.70 -0.67 10.97 16 28 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 31 H 0.10 2.89 7.85 -2.39 -0.02 2.87 16 32 H 0.14 6.18 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -61.29 279.28 -0.04 -61.33 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -1.14 Total: 46.41 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 3.91 Total: -9.46 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.79 Total: -116.04 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.70 kcal Total: -61.29 -0.04 -61.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162540767.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.216 kcal (2) G-P(sol) polarization free energy of solvation -61.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds