Wall clock time and date at job start Mon Mar 30 2020 18:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86801 * 120.00300 * 2 1 4 4 H 1.48504 * 109.47230 * 270.00691 * 3 2 1 5 5 H 1.48511 * 109.46863 * 30.00308 * 3 2 1 6 6 H 1.48498 * 109.47332 * 150.00045 * 3 2 1 7 7 C 1.40026 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99818 * 179.97438 * 7 2 1 9 9 C 1.41312 * 120.00398 * 359.97438 * 7 2 1 10 10 C 1.40592 * 119.78733 * 180.02562 * 9 7 2 11 11 C 1.38350 * 119.14607 * 179.97438 * 10 9 7 12 12 C 1.38640 * 118.68215 * 359.97438 * 11 10 9 13 13 C 1.39756 * 119.49106 * 359.97438 * 12 11 10 14 14 N 1.38823 * 119.58350 * 179.97438 * 13 12 11 15 15 C 1.46501 * 119.99767 * 359.58954 * 14 13 12 16 16 C 1.50696 * 115.54740 * 289.84380 * 15 14 13 17 17 N 1.34777 * 120.00203 * 326.56906 * 16 15 14 18 18 O 1.21286 * 120.00078 * 146.56928 * 16 15 14 19 19 C 1.53004 * 117.49837 * 144.17492 * 15 14 13 20 20 C 1.52998 * 117.50110 * 75.51530 * 15 14 13 21 21 N 1.31984 * 120.83066 * 0.25665 * 13 12 11 22 22 H 0.97002 * 120.00226 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.42432 * 359.96955 * 10 9 7 24 24 H 1.07999 * 120.65321 * 179.97438 * 11 10 9 25 25 H 1.07995 * 120.25032 * 179.97438 * 12 11 10 26 26 H 0.97004 * 120.00310 * 179.85394 * 14 13 12 27 27 H 0.96999 * 119.99868 * 355.55067 * 17 16 15 28 28 H 0.96995 * 120.00105 * 175.55632 * 17 16 15 29 29 H 1.08996 * 117.49943 * 0.02562 * 19 15 14 30 30 H 1.08998 * 117.49724 * 145.01533 * 19 15 14 31 31 H 1.09002 * 117.49993 * 214.97804 * 20 15 14 32 32 H 1.09004 * 117.50093 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7002 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3009 -2.4365 -0.0005 10 6 2.0084 -3.6514 -0.0005 11 6 1.3034 -4.8418 0.0000 12 6 -0.0822 -4.7944 0.0011 13 6 -0.7283 -3.5551 0.0021 14 7 -2.1156 -3.5055 0.0026 15 6 -2.8930 -4.7472 -0.0070 16 6 -2.8468 -5.5329 -1.2921 17 7 -2.7516 -4.8894 -2.4724 18 8 -2.8952 -6.7445 -1.2642 19 6 -4.2005 -4.7683 0.7874 20 6 -2.9800 -5.5364 1.3009 21 7 -0.0360 -2.4314 -0.0030 22 1 -0.4850 0.8400 0.0004 23 1 3.0885 -3.6554 -0.0010 24 1 1.8221 -5.7890 -0.0004 25 1 -0.6578 -5.7082 0.0011 26 1 -2.5703 -2.6486 0.0055 27 1 -2.7779 -3.9201 -2.4998 28 1 -2.6570 -5.3954 -3.2945 29 1 -4.4825 -3.8582 1.3168 30 1 -5.0271 -5.3508 0.3806 31 1 -3.0043 -6.6240 1.2318 32 1 -2.4585 -5.1320 2.1684 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162548469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:07:56 Heat of formation + Delta-G solvation = 5.927580 kcal Electronic energy + Delta-G solvation = -17664.948641 eV Core-core repulsion = 14818.266806 eV Total energy + Delta-G solvation = -2846.681835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26844 -39.84961 -37.85285 -35.56268 -34.75333 -33.89846 -32.17576 -30.25810 -27.31900 -25.44375 -23.80756 -23.00994 -22.80380 -20.69247 -19.40927 -18.40676 -18.08358 -17.95101 -16.63610 -16.34554 -16.18214 -15.72042 -15.48332 -15.13720 -14.61156 -14.36326 -14.09340 -13.74391 -12.93286 -12.75161 -12.60361 -12.50412 -12.39030 -12.03320 -11.96817 -11.69986 -11.24566 -11.12572 -10.68206 -10.60989 -9.85567 -9.48146 -8.41984 -8.23991 -6.47101 1.03782 1.29425 1.39502 1.44246 1.55929 1.59626 2.23470 2.26828 2.50323 2.87684 2.94844 3.76297 3.83750 3.93168 4.08461 4.33728 4.48439 4.64790 4.77617 4.92297 4.96322 4.98591 5.09107 5.16138 5.34969 5.68723 5.80336 5.93411 6.02498 6.21823 6.31787 6.50550 6.81446 6.88709 7.18467 7.25326 8.29865 8.49924 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.006464 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.325463 B = 4330.525702 C = 4658.333823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.468 4.468 8 H 0.085 0.915 9 C 0.260 3.740 10 C -0.338 4.338 11 C -0.035 4.035 12 C -0.359 4.359 13 C 0.406 3.594 14 N -0.688 5.688 15 C 0.061 3.939 16 C 0.553 3.447 17 N -0.829 5.829 18 O -0.583 6.583 19 C -0.114 4.114 20 C -0.153 4.153 21 N -0.552 5.552 22 H 0.278 0.722 23 H 0.102 0.898 24 H 0.119 0.881 25 H 0.100 0.900 26 H 0.405 0.595 27 H 0.411 0.589 28 H 0.407 0.593 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 -2.055 -0.994 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.133 3.867 10 C -0.361 4.361 11 C -0.059 4.059 12 C -0.385 4.385 13 C 0.166 3.834 14 N -0.325 5.325 15 C -0.032 4.032 16 C 0.337 3.663 17 N -0.391 5.391 18 O -0.463 6.463 19 C -0.152 4.152 20 C -0.192 4.192 21 N -0.275 5.275 22 H 0.089 0.911 23 H 0.120 0.880 24 H 0.137 0.863 25 H 0.118 0.882 26 H 0.242 0.758 27 H 0.240 0.760 28 H 0.239 0.761 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.572 -2.055 -0.817 8.852 hybrid contribution 1.016 0.271 -0.454 1.145 sum -7.556 -1.783 -1.271 7.867 Atomic orbital electron populations 1.70194 1.08515 1.28808 1.29202 1.26868 0.95796 1.04037 0.92599 0.85197 0.79009 0.76092 0.79304 1.18890 1.19202 1.18391 1.19912 0.94591 0.90433 1.45017 0.89722 1.18630 0.87684 0.92947 0.87459 1.21677 0.98970 0.93640 1.21793 1.20959 0.93828 0.97087 0.94009 1.20831 0.94739 0.96015 1.26884 1.18700 0.85386 0.89811 0.89510 1.43289 1.00902 1.05582 1.82774 1.20314 1.01524 0.89879 0.91444 1.19962 0.73756 0.86854 0.85776 1.43565 1.75068 1.12185 1.08273 1.90682 1.52664 1.14997 1.87912 1.23467 0.89569 1.03432 0.98694 1.23326 1.01266 0.99759 0.94853 1.68178 1.07725 1.25472 1.26079 0.91144 0.88026 0.86299 0.88177 0.75811 0.75962 0.76112 0.85478 0.85669 0.87454 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.19 11.46 21.84 0.25 -37.94 16 2 C 0.03 1.47 5.50 85.29 0.47 1.93 16 3 Si 0.98 37.31 29.56 68.60 2.03 39.34 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.47 -25.32 9.14 23.46 0.21 -25.11 16 8 H 0.08 4.35 7.85 -2.91 -0.02 4.32 16 9 C 0.26 14.47 6.55 40.19 0.26 14.73 16 10 C -0.34 -17.32 9.83 22.87 0.22 -17.09 16 11 C -0.03 -1.62 10.15 22.39 0.23 -1.40 16 12 C -0.36 -16.66 8.94 22.73 0.20 -16.45 16 13 C 0.41 18.98 7.59 133.40 1.01 19.99 16 14 N -0.69 -25.11 5.21 -308.26 -1.61 -26.71 16 15 C 0.06 1.88 1.66 2.86 0.00 1.89 16 16 C 0.55 18.05 6.47 87.66 0.57 18.61 16 17 N -0.83 -22.44 8.82 -173.53 -1.53 -23.97 16 18 O -0.58 -22.21 17.10 -3.05 -0.05 -22.27 16 19 C -0.11 -2.52 10.16 30.62 0.31 -2.21 16 20 C -0.15 -4.36 9.28 30.62 0.28 -4.08 16 21 N -0.55 -29.66 7.89 -186.59 -1.47 -31.13 16 22 H 0.28 12.78 8.29 -92.71 -0.77 12.01 16 23 H 0.10 4.89 8.06 -2.91 -0.02 4.86 16 24 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 25 H 0.10 4.47 5.85 -2.91 -0.02 4.46 16 26 H 0.40 14.19 8.95 -92.71 -0.83 13.36 16 27 H 0.41 10.42 8.52 -92.71 -0.79 9.63 16 28 H 0.41 9.54 8.93 -92.71 -0.83 8.72 16 29 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.11 3.09 7.67 -2.39 -0.02 3.07 16 32 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -66.08 283.21 0.14 -65.94 By element: Atomic # 1 Polarization: 47.18 SS G_CDS: -1.26 Total: 45.92 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 3.78 Total: -9.18 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.36 Total: -119.75 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -66.08 0.14 -65.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162548469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.864 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds