Wall clock time and date at job start Mon Mar 30 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21523 * 119.99505 * 2 1 4 4 C 1.40307 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.35558 * 119.99544 * 185.67997 * 4 2 1 6 6 C 1.50701 * 119.99625 * 186.15845 * 5 4 2 7 7 N 1.36365 * 120.00373 * 6.15218 * 5 4 2 8 8 C 1.38897 * 120.00190 * 242.96509 * 7 5 4 9 9 C 1.40077 * 120.75400 * 179.97438 * 8 7 5 10 10 N 1.31651 * 119.13590 * 180.02562 * 9 8 7 11 11 C 1.33611 * 120.79425 * 0.02562 * 10 9 8 12 12 C 1.41127 * 119.17873 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99307 * 5.28139 * 12 11 10 14 14 C 1.40057 * 120.00190 * 185.27804 * 12 11 10 15 15 N 1.30716 * 120.00117 * 354.37171 * 14 12 11 16 16 Si 1.86804 * 120.00126 * 174.64173 * 14 12 11 17 17 H 1.48493 * 109.47156 * 95.00006 * 16 14 12 18 18 H 1.48496 * 109.46927 * 215.00152 * 16 14 12 19 19 H 1.48505 * 109.46781 * 334.99925 * 16 14 12 20 20 N 1.33619 * 121.64523 * 0.24911 * 11 10 9 21 21 C 1.31645 * 120.79076 * 359.48712 * 20 11 10 22 22 H 1.09004 * 109.46998 * 240.00167 * 1 2 3 23 23 H 1.08994 * 109.47451 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47051 * 120.00581 * 1 2 3 25 25 H 1.07997 * 119.99981 * 5.67767 * 4 2 1 26 26 H 1.09005 * 109.46509 * 274.17787 * 6 5 4 27 27 H 1.09003 * 109.47549 * 34.16948 * 6 5 4 28 28 H 1.08994 * 109.47264 * 154.17599 * 6 5 4 29 29 H 0.96998 * 120.00262 * 62.95914 * 7 5 4 30 30 H 1.07998 * 120.42819 * 359.97438 * 9 8 7 31 31 H 0.96996 * 119.99984 * 179.97438 * 15 14 12 32 32 H 1.08007 * 120.43191 * 180.25353 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0525 0.0000 4 6 2.2086 -1.2151 0.0005 5 6 3.5591 -1.2178 0.1167 6 6 4.3246 -2.5085 -0.0216 7 7 4.2251 -0.0527 0.3587 8 6 5.1302 0.4366 -0.5744 9 6 5.8225 1.6320 -0.3422 10 7 6.6726 2.0668 -1.2486 11 6 6.8777 1.3828 -2.3779 12 6 7.7965 1.8805 -3.3264 13 1 8.3862 2.7563 -3.0990 14 6 7.9437 1.2387 -4.5626 15 7 7.3132 0.1177 -4.7961 16 14 9.0470 1.9806 -5.8748 17 1 10.3954 1.3641 -5.7943 18 1 8.4638 1.7223 -7.2158 19 1 9.1586 3.4454 -5.6573 20 7 6.2306 0.2422 -2.6340 21 6 5.3703 -0.2533 -1.7695 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5139 -0.8899 25 1 1.6725 -2.1481 -0.0916 26 1 4.3579 -3.0163 0.9424 27 1 3.8295 -3.1482 -0.7522 28 1 5.3401 -2.2948 -0.3549 29 1 4.0667 0.4344 1.1824 30 1 5.6602 2.1901 0.5680 31 1 7.4148 -0.3266 -5.6524 32 1 4.8534 -1.1779 -1.9807 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163738618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:27 Heat of formation + Delta-G solvation = 39.680766 kcal Electronic energy + Delta-G solvation = -17346.701890 eV Core-core repulsion = 14501.483703 eV Total energy + Delta-G solvation = -2845.218187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.78921 -38.74687 -36.52647 -33.67313 -31.99403 -31.78950 -30.24896 -28.88790 -27.44994 -25.52153 -22.99543 -21.94046 -20.58591 -18.66615 -17.88313 -16.74675 -16.07648 -15.40618 -15.33256 -14.76547 -14.42777 -14.36460 -13.53965 -13.14624 -13.02565 -12.73437 -12.58246 -12.35036 -11.96593 -11.88572 -11.71206 -11.30720 -11.23037 -10.66245 -10.42735 -10.23420 -9.55552 -9.34060 -9.18649 -9.01994 -8.58843 -7.33137 -6.88895 -6.49983 -4.47726 1.25446 2.67471 2.88184 3.09676 3.12131 3.17421 3.33820 3.93979 4.10051 4.64640 4.70137 5.25770 5.41777 5.53661 5.56618 5.62348 5.74074 5.74686 5.86670 5.92943 5.95144 6.05832 6.21695 6.27948 6.53126 6.72424 7.02390 7.12803 7.32234 8.10266 8.15306 8.21933 8.31281 8.49651 8.65206 9.12891 10.15800 10.30989 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034527 B = 0.005494 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.754562 B = 5094.787370 C = 5167.441508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.373 3.627 3 O -0.472 6.472 4 C -0.340 4.340 5 C 0.258 3.742 6 C -0.150 4.150 7 N -0.660 5.660 8 C -0.064 4.064 9 C 0.130 3.870 10 N -0.569 5.569 11 C 0.372 3.628 12 C -0.404 4.404 13 H 0.091 0.909 14 C 0.067 3.933 15 N -0.719 5.719 16 Si 0.917 3.083 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.259 1.259 20 N -0.480 5.480 21 C 0.118 3.882 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.127 0.873 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.401 0.599 30 H 0.129 0.871 31 H 0.274 0.726 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 -6.201 6.500 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.257 3.743 3 O -0.352 6.352 4 C -0.365 4.365 5 C 0.153 3.847 6 C -0.208 4.208 7 N -0.286 5.286 8 C -0.167 4.167 9 C -0.045 4.045 10 N -0.288 5.288 11 C 0.133 3.867 12 C -0.440 4.440 13 H 0.109 0.891 14 C -0.159 4.159 15 N -0.342 5.342 16 Si 0.740 3.260 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.183 1.183 20 N -0.197 5.197 21 C -0.059 4.059 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.145 0.855 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.239 0.761 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.001 -5.477 5.464 10.434 hybrid contribution -0.648 -0.180 0.461 0.816 sum -7.650 -5.657 5.925 11.208 Atomic orbital electron populations 1.22221 0.96101 1.03766 1.03319 1.20539 0.91192 0.89052 0.73550 1.90654 1.71585 1.34847 1.38083 1.22147 0.95254 0.99785 1.19320 1.20271 0.91085 0.87818 0.85534 1.21500 1.01913 0.94632 1.02806 1.40634 1.44210 1.22782 1.20999 1.19071 1.02286 1.00712 0.94606 1.22212 0.92759 0.91705 0.97793 1.68609 1.20510 1.34992 1.04684 1.19857 0.92117 0.86147 0.88605 1.19186 1.17385 1.10793 0.96653 0.89055 1.26058 0.95906 0.94383 0.99538 1.70135 1.30219 1.11685 1.22130 0.86161 0.79937 0.80627 0.79237 1.19417 1.20047 1.18316 1.69309 1.08312 1.13334 1.28711 1.22796 0.96189 0.98139 0.88791 0.90052 0.90985 0.90001 0.85489 0.90078 0.90244 0.90071 0.76111 0.85345 0.91525 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.19 10.19 36.01 0.37 -1.83 16 2 C 0.37 5.75 6.96 -33.53 -0.23 5.52 16 3 O -0.47 -9.35 15.20 5.35 0.08 -9.27 16 4 C -0.34 -4.72 9.37 -39.76 -0.37 -5.09 16 5 C 0.26 3.92 5.27 -81.53 -0.43 3.49 16 6 C -0.15 -1.89 9.06 36.01 0.33 -1.56 16 7 N -0.66 -11.76 3.28 -6.41 -0.02 -11.78 16 8 C -0.06 -1.42 6.53 -83.29 -0.54 -1.96 16 9 C 0.13 3.06 11.20 -16.94 -0.19 2.87 16 10 N -0.57 -15.44 10.34 -12.49 -0.13 -15.57 16 11 C 0.37 10.70 7.35 -158.21 -1.16 9.54 16 12 C -0.40 -11.31 9.35 -37.80 -0.35 -11.67 16 13 H 0.09 2.46 7.85 -52.49 -0.41 2.05 16 14 C 0.07 1.73 5.49 -17.34 -0.10 1.63 16 15 N -0.72 -19.18 11.43 55.55 0.63 -18.55 16 16 Si 0.92 18.88 29.56 -169.99 -5.03 13.86 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 20 N -0.48 -13.43 7.86 -12.49 -0.10 -13.53 16 21 C 0.12 2.84 9.55 -16.95 -0.16 2.68 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.08 1.21 6.54 -51.93 -0.34 0.87 16 29 H 0.40 6.66 8.35 -40.82 -0.34 6.32 16 30 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 31 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 32 H 0.13 2.77 5.96 -52.48 -0.31 2.46 16 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -32.38 283.08 -6.64 -39.01 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.50 Total: 7.93 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.85 Total: 3.63 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.39 Total: -59.43 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.38 -6.64 -39.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163738618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.696 kcal (2) G-P(sol) polarization free energy of solvation -32.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds