Wall clock time and date at job start Mon Mar 30 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21523 * 119.99505 * 2 1 4 4 C 1.40307 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.35558 * 119.99544 * 185.67997 * 4 2 1 6 6 C 1.50701 * 119.99625 * 186.15845 * 5 4 2 7 7 N 1.36365 * 120.00373 * 6.15218 * 5 4 2 8 8 C 1.38897 * 120.00190 * 242.96509 * 7 5 4 9 9 C 1.40077 * 120.75400 * 179.97438 * 8 7 5 10 10 N 1.31651 * 119.13590 * 180.02562 * 9 8 7 11 11 C 1.33611 * 120.79425 * 0.02562 * 10 9 8 12 12 C 1.41127 * 119.17873 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99307 * 5.28139 * 12 11 10 14 14 C 1.40057 * 120.00190 * 185.27804 * 12 11 10 15 15 N 1.30716 * 120.00117 * 354.37171 * 14 12 11 16 16 Si 1.86804 * 120.00126 * 174.64173 * 14 12 11 17 17 H 1.48493 * 109.47156 * 95.00006 * 16 14 12 18 18 H 1.48496 * 109.46927 * 215.00152 * 16 14 12 19 19 H 1.48505 * 109.46781 * 334.99925 * 16 14 12 20 20 N 1.33619 * 121.64523 * 0.24911 * 11 10 9 21 21 C 1.31645 * 120.79076 * 359.48712 * 20 11 10 22 22 H 1.09004 * 109.46998 * 240.00167 * 1 2 3 23 23 H 1.08994 * 109.47451 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47051 * 120.00581 * 1 2 3 25 25 H 1.07997 * 119.99981 * 5.67767 * 4 2 1 26 26 H 1.09005 * 109.46509 * 274.17787 * 6 5 4 27 27 H 1.09003 * 109.47549 * 34.16948 * 6 5 4 28 28 H 1.08994 * 109.47264 * 154.17599 * 6 5 4 29 29 H 0.96998 * 120.00262 * 62.95914 * 7 5 4 30 30 H 1.07998 * 120.42819 * 359.97438 * 9 8 7 31 31 H 0.96996 * 119.99984 * 179.97438 * 15 14 12 32 32 H 1.08007 * 120.43191 * 180.25353 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0525 0.0000 4 6 2.2086 -1.2151 0.0005 5 6 3.5591 -1.2178 0.1167 6 6 4.3246 -2.5085 -0.0216 7 7 4.2251 -0.0527 0.3587 8 6 5.1302 0.4366 -0.5744 9 6 5.8225 1.6320 -0.3422 10 7 6.6726 2.0668 -1.2486 11 6 6.8777 1.3828 -2.3779 12 6 7.7965 1.8805 -3.3264 13 1 8.3862 2.7563 -3.0990 14 6 7.9437 1.2387 -4.5626 15 7 7.3132 0.1177 -4.7961 16 14 9.0470 1.9806 -5.8748 17 1 10.3954 1.3641 -5.7943 18 1 8.4638 1.7223 -7.2158 19 1 9.1586 3.4454 -5.6573 20 7 6.2306 0.2422 -2.6340 21 6 5.3703 -0.2533 -1.7695 22 1 -0.3633 -0.5138 0.8900 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5139 -0.8899 25 1 1.6725 -2.1481 -0.0916 26 1 4.3579 -3.0163 0.9424 27 1 3.8295 -3.1482 -0.7522 28 1 5.3401 -2.2948 -0.3549 29 1 4.0667 0.4344 1.1824 30 1 5.6602 2.1901 0.5680 31 1 7.4148 -0.3266 -5.6524 32 1 4.8534 -1.1779 -1.9807 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163738618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:27 Heat of formation + Delta-G solvation = 18.119169 kcal Electronic energy + Delta-G solvation = -17347.636871 eV Core-core repulsion = 14501.483703 eV Total energy + Delta-G solvation = -2846.153168 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.35687 -40.36615 -37.99948 -35.53140 -33.77754 -33.44110 -31.46474 -30.53353 -28.59324 -27.30594 -24.86859 -23.72225 -21.89004 -20.06026 -19.77636 -18.40193 -17.53531 -17.16446 -16.66165 -16.41891 -16.11213 -15.60279 -15.16819 -14.58387 -14.44989 -14.28357 -13.90638 -13.62221 -13.15804 -13.04992 -12.93590 -12.89545 -12.86085 -12.59578 -12.00966 -11.90739 -11.45159 -11.25239 -10.96538 -10.39754 -9.96525 -9.31208 -8.58671 -8.39274 -6.44114 0.00244 0.82527 0.95312 1.41943 1.52047 1.58659 2.14745 2.24544 2.69362 2.79797 3.56774 3.87696 3.94481 4.01141 4.18710 4.26746 4.47994 4.52302 4.57668 4.70399 4.76163 4.76725 5.01291 5.05880 5.10379 5.25359 5.30561 5.49375 5.66595 6.17646 6.48529 6.51876 6.71499 6.87569 6.97533 7.20410 8.20552 8.43568 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034527 B = 0.005494 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.754562 B = 5094.787370 C = 5167.441508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.362 3.638 3 O -0.524 6.524 4 C -0.320 4.320 5 C 0.232 3.768 6 C -0.144 4.144 7 N -0.661 5.661 8 C -0.028 4.028 9 C 0.105 3.895 10 N -0.592 5.592 11 C 0.340 3.660 12 C -0.449 4.449 13 H 0.085 0.915 14 C 0.026 3.974 15 N -0.757 5.757 16 Si 0.997 3.003 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.260 1.260 20 N -0.508 5.508 21 C 0.097 3.903 22 H 0.113 0.887 23 H 0.063 0.937 24 H 0.102 0.898 25 H 0.171 0.829 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.407 0.593 30 H 0.158 0.842 31 H 0.282 0.718 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 -7.804 6.844 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.249 3.751 3 O -0.407 6.407 4 C -0.343 4.343 5 C 0.130 3.870 6 C -0.202 4.202 7 N -0.289 5.289 8 C -0.132 4.132 9 C -0.068 4.068 10 N -0.312 5.312 11 C 0.099 3.901 12 C -0.486 4.486 13 H 0.103 0.897 14 C -0.196 4.196 15 N -0.380 5.380 16 Si 0.816 3.184 17 H -0.182 1.182 18 H -0.187 1.187 19 H -0.184 1.184 20 N -0.225 5.225 21 C -0.078 4.078 22 H 0.131 0.869 23 H 0.082 0.918 24 H 0.121 0.879 25 H 0.188 0.812 26 H 0.128 0.872 27 H 0.120 0.880 28 H 0.072 0.928 29 H 0.245 0.755 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.834 -7.153 5.881 12.798 hybrid contribution -0.412 0.203 0.600 0.756 sum -9.246 -6.950 6.481 13.258 Atomic orbital electron populations 1.22201 0.92550 1.04154 1.05752 1.21403 0.93479 0.88669 0.71577 1.90654 1.73036 1.36699 1.40352 1.22607 0.94735 1.00996 1.15946 1.20821 0.91982 0.87653 0.86566 1.21499 0.99976 0.93715 1.04995 1.40556 1.43716 1.24018 1.20600 1.19038 1.00525 0.99239 0.94385 1.22730 0.92845 0.92853 0.98379 1.68583 1.21861 1.35652 1.05092 1.20209 0.93316 0.87043 0.89546 1.19445 1.18868 1.11815 0.98428 0.89722 1.26966 0.97127 0.94516 1.01022 1.70195 1.31696 1.12941 1.23204 0.84982 0.77941 0.79391 0.76043 1.18242 1.18750 1.18385 1.69235 1.09497 1.13535 1.30248 1.23158 0.96283 0.99124 0.89241 0.86867 0.91824 0.87913 0.81204 0.87214 0.87968 0.92840 0.75498 0.82509 0.90703 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.51 10.19 71.24 0.73 -2.78 16 2 C 0.36 10.17 6.96 26.19 0.18 10.35 16 3 O -0.52 -20.27 15.20 -3.79 -0.06 -20.32 16 4 C -0.32 -7.61 9.37 22.15 0.21 -7.40 16 5 C 0.23 6.43 5.27 41.23 0.22 6.65 16 6 C -0.14 -3.20 9.06 71.24 0.65 -2.55 16 7 N -0.66 -22.84 3.28 -174.18 -0.57 -23.41 16 8 C -0.03 -1.24 6.53 38.91 0.25 -0.99 16 9 C 0.11 5.06 11.20 85.17 0.95 6.02 16 10 N -0.59 -33.44 10.34 -193.43 -2.00 -35.44 16 11 C 0.34 20.47 7.35 134.94 0.99 21.46 16 12 C -0.45 -26.32 9.35 23.42 0.22 -26.10 16 13 H 0.08 4.83 7.85 -2.91 -0.02 4.80 16 14 C 0.03 1.36 5.49 85.30 0.47 1.83 16 15 N -0.76 -41.47 11.43 21.84 0.25 -41.23 16 16 Si 1.00 39.48 29.56 68.60 2.03 41.51 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 19 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 20 N -0.51 -29.42 7.86 -193.43 -1.52 -30.94 16 21 C 0.10 4.77 9.55 85.16 0.81 5.59 16 22 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.31 8.12 -2.39 -0.02 1.29 16 24 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 26 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.10 1.82 8.11 -2.39 -0.02 1.80 16 28 H 0.05 1.52 6.54 -2.39 -0.02 1.51 16 29 H 0.41 13.10 8.35 -92.71 -0.77 12.33 16 30 H 0.16 6.40 8.06 -2.91 -0.02 6.38 16 31 H 0.28 13.76 8.29 -92.71 -0.77 13.00 16 32 H 0.15 6.43 5.96 -2.91 -0.02 6.41 16 Total: -1.00 -74.65 283.08 4.19 -70.46 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.38 Total: 27.30 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 5.68 Total: 12.07 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -3.84 Total: -131.02 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.06 Total: -20.32 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -74.65 4.19 -70.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163738618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.581 kcal (2) G-P(sol) polarization free energy of solvation -74.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds