Wall clock time and date at job start Mon Mar 30 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48508 * 109.46949 * 273.24295 * 3 2 1 5 5 H 1.48495 * 109.46976 * 33.24361 * 3 2 1 6 6 H 1.48502 * 109.47064 * 153.24850 * 3 2 1 7 7 C 1.39921 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00160 * 29.70954 * 7 2 1 9 9 C 1.41292 * 119.99933 * 209.71498 * 7 2 1 10 10 C 1.40622 * 120.22398 * 215.94975 * 9 7 2 11 11 C 1.38192 * 119.70400 * 180.02562 * 10 9 7 12 12 N 1.39806 * 119.91492 * 179.97438 * 11 10 9 13 13 C 1.38945 * 119.99641 * 164.59816 * 12 11 10 14 14 C 1.31599 * 124.53467 * 120.45431 * 13 12 11 15 15 C 1.51110 * 110.92793 * 180.02562 * 14 13 12 16 16 C 1.54607 * 104.78332 * 343.48254 * 15 14 13 17 17 C 1.51110 * 124.53864 * 300.47069 * 13 12 11 18 18 C 1.39431 * 120.16918 * 0.24595 * 11 10 9 19 19 C 1.38358 * 120.45961 * 359.49267 * 18 11 10 20 20 C 1.38014 * 120.29297 * 0.51444 * 19 18 11 21 21 F 1.35103 * 120.08604 * 179.72412 * 20 19 18 22 22 H 0.96996 * 120.00076 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.14923 * 0.04049 * 10 9 7 24 24 H 0.97001 * 120.00242 * 344.59886 * 12 11 10 25 25 H 1.07998 * 124.53728 * 359.97438 * 14 13 12 26 26 H 1.08997 * 110.37977 * 224.65395 * 15 14 13 27 27 H 1.09001 * 110.37164 * 102.30681 * 15 14 13 28 28 H 1.08996 * 111.01182 * 142.90341 * 16 15 14 29 29 H 1.08998 * 111.00670 * 266.76686 * 16 15 14 30 30 H 1.08996 * 110.37209 * 77.67712 * 17 13 12 31 31 H 1.09001 * 110.37388 * 315.32642 * 17 13 12 32 32 H 1.07999 * 119.77344 * 179.72884 * 18 11 10 33 33 H 1.08009 * 119.85113 * 180.25750 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4215 2.0860 -1.3979 5 1 1.4760 2.6319 0.7675 6 1 3.5728 1.4213 0.6302 7 6 2.0082 -1.2117 -0.0005 8 1 1.5747 -2.0854 -0.4645 9 6 3.2818 -1.2924 0.6060 10 6 4.2821 -2.1069 0.0462 11 6 5.5238 -2.1783 0.6485 12 7 6.5213 -2.9871 0.0960 13 6 7.8438 -2.8262 0.4907 14 6 8.5767 -3.7682 1.0450 15 6 9.9670 -3.2608 1.3504 16 6 10.1097 -1.9711 0.5098 17 6 8.6329 -1.5463 0.3411 18 6 5.7824 -1.4500 1.8091 19 6 4.8050 -0.6423 2.3628 20 6 3.5582 -0.5570 1.7770 21 9 2.6051 0.2287 2.3244 22 1 -0.4850 0.8400 -0.0004 23 1 4.0810 -2.6740 -0.8506 24 1 6.2902 -3.6605 -0.5628 25 1 8.2307 -4.7696 1.2545 26 1 10.7138 -3.9951 1.0487 27 1 10.0635 -3.0344 2.4123 28 1 10.6754 -1.2126 1.0508 29 1 10.5680 -2.1831 -0.4562 30 1 8.3520 -0.8344 1.1172 31 1 8.4724 -1.1148 -0.6470 32 1 6.7537 -1.5139 2.2770 33 1 5.0174 -0.0793 3.2597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174000551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:09:05 Heat of formation + Delta-G solvation = -9.209400 kcal Electronic energy + Delta-G solvation = -17374.569859 eV Core-core repulsion = 14507.311674 eV Total energy + Delta-G solvation = -2867.258185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.46671 -39.15397 -37.33687 -34.40823 -33.24573 -30.44809 -29.04058 -28.12737 -26.22174 -25.19439 -21.41865 -21.05743 -20.51363 -18.53427 -17.84048 -16.35367 -16.08585 -15.97702 -15.44678 -14.92771 -14.46099 -14.10311 -13.01659 -12.95360 -12.87892 -12.58674 -12.49199 -11.94604 -11.71342 -11.61598 -11.41131 -11.36161 -11.10915 -11.03895 -10.94724 -10.59003 -9.94737 -9.52152 -9.36643 -9.07001 -8.29315 -7.74858 -6.99489 -6.52886 -4.48923 2.23925 2.54999 2.74103 3.20604 3.28580 3.35707 3.94606 4.08319 4.45488 4.76073 4.91382 5.05549 5.24243 5.52557 5.65741 5.79698 5.83315 5.85989 5.91670 5.95460 6.03008 6.22453 6.33281 6.45943 6.58995 6.67207 6.91211 6.98650 7.21226 7.37374 7.48632 7.66606 7.82147 8.22559 8.32140 8.38013 8.63192 8.76302 10.00955 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.040860 B = 0.005896 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.103300 B = 4747.626157 C = 4861.363320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.098 3.902 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.463 4.463 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.251 4.251 11 C 0.215 3.785 12 N -0.700 5.700 13 C 0.133 3.867 14 C -0.225 4.225 15 C -0.083 4.083 16 C -0.121 4.121 17 C -0.106 4.106 18 C -0.267 4.267 19 C -0.083 4.083 20 C -0.048 4.048 21 F -0.154 7.154 22 H 0.286 0.714 23 H 0.107 0.893 24 H 0.400 0.600 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 -2.362 0.486 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.125 4.125 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.165 1.165 7 C -0.490 4.490 8 H 0.112 0.888 9 C 0.093 3.907 10 C -0.274 4.274 11 C 0.119 3.881 12 N -0.327 5.327 13 C 0.037 3.963 14 C -0.247 4.247 15 C -0.121 4.121 16 C -0.159 4.159 17 C -0.145 4.145 18 C -0.289 4.289 19 C -0.103 4.103 20 C -0.068 4.068 21 F -0.134 7.134 22 H 0.096 0.904 23 H 0.125 0.875 24 H 0.237 0.763 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.087 -2.161 0.580 14.263 hybrid contribution -0.188 0.519 -0.206 0.589 sum 13.898 -1.642 0.373 14.000 Atomic orbital electron populations 1.69805 1.08562 1.30602 1.31930 1.26182 0.94477 1.02138 0.89698 0.86250 0.83032 0.79431 0.77350 1.21561 1.20450 1.16500 1.19227 0.98387 0.97986 1.33410 0.88777 1.17388 0.92811 0.90744 0.89786 1.20397 0.92170 1.11933 1.02882 1.17555 0.87745 0.91131 0.91700 1.41550 1.02532 1.40858 1.47746 1.19473 0.84865 0.95478 0.96462 1.23322 0.97444 1.00429 1.03509 1.21060 0.94670 0.96472 0.99880 1.22379 0.96000 0.97385 1.00104 1.21541 0.93574 0.96638 1.02725 1.19800 0.99794 1.09166 1.00151 1.20364 0.92064 0.98889 0.98964 1.17665 0.87174 1.04347 0.97655 1.91046 1.64154 1.72888 1.85265 0.90370 0.87516 0.76345 0.86150 0.91836 0.91053 0.91068 0.91351 0.90041 0.91108 0.87933 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.41 13.93 55.55 0.77 -20.64 16 2 C 0.10 2.63 4.70 -17.34 -0.08 2.55 16 3 Si 0.91 21.97 25.44 -169.99 -4.32 17.64 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.24 -5.95 5.46 56.52 0.31 -5.65 16 7 C -0.46 -12.73 9.37 -37.79 -0.35 -13.09 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.10 2.50 4.84 -106.78 -0.52 1.98 16 10 C -0.25 -5.73 9.64 -38.70 -0.37 -6.11 16 11 C 0.22 4.45 6.53 -83.79 -0.55 3.90 16 12 N -0.70 -11.80 5.53 -6.92 -0.04 -11.84 16 13 C 0.13 1.98 5.17 -81.02 -0.42 1.56 16 14 C -0.23 -2.95 10.80 -35.97 -0.39 -3.34 16 15 C -0.08 -0.88 6.81 -26.84 -0.18 -1.06 16 16 C -0.12 -1.26 7.18 -25.05 -0.18 -1.44 16 17 C -0.11 -1.43 6.44 -26.84 -0.17 -1.60 16 18 C -0.27 -5.56 8.89 -39.09 -0.35 -5.91 16 19 C -0.08 -1.86 10.00 -39.62 -0.40 -2.25 16 20 C -0.05 -1.21 5.06 -38.61 -0.20 -1.40 16 21 F -0.15 -4.03 13.00 2.25 0.03 -4.00 16 22 H 0.29 7.05 8.30 -40.82 -0.34 6.71 16 23 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 24 H 0.40 5.99 8.86 -40.82 -0.36 5.63 16 25 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.17 7.00 -51.93 -0.36 0.80 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 1.94 6.19 -52.49 -0.33 1.62 16 33 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 276.30 15.07 4.16 4.16 Total: -1.00 -28.21 276.30 -7.63 -35.84 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.08 Total: 5.03 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -4.15 Total: -26.21 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.74 Total: -32.47 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.03 Total: -4.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.32 Total: 17.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.21 -7.63 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174000551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.631 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds