Wall clock time and date at job start Mon Mar 30 2020 18:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99748 * 2 1 4 4 H 1.48495 * 109.47024 * 269.99514 * 3 2 1 5 5 H 1.48495 * 109.47508 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.47034 * 150.00179 * 3 2 1 7 7 C 1.38809 * 120.00164 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00343 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.64726 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.83178 * 155.83545 * 10 9 7 12 12 C 1.55157 * 101.57935 * 37.00821 * 11 10 9 13 13 H 1.09003 * 110.71894 * 83.04502 * 12 11 10 14 14 O 1.42907 * 110.72095 * 206.13504 * 12 11 10 15 15 C 1.42903 * 113.99838 * 210.00105 * 14 12 11 16 16 C 1.53000 * 109.46726 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.52992 * 109.47482 * 180.02562 * 17 16 15 19 19 Cl 1.80308 * 109.47499 * 179.97438 * 18 17 16 20 20 C 1.47024 * 125.64533 * 179.97438 * 9 7 2 21 21 H 0.97002 * 120.00096 * 0.02562 * 1 2 3 22 22 H 1.09004 * 110.36976 * 37.00000 * 10 9 7 23 23 H 1.08999 * 110.36828 * 274.67154 * 10 9 7 24 24 H 1.09002 * 111.00742 * 278.93741 * 11 10 9 25 25 H 1.08994 * 111.00877 * 155.08535 * 11 10 9 26 26 H 1.09001 * 109.46938 * 60.00058 * 15 14 12 27 27 H 1.08992 * 109.47388 * 300.00049 * 15 14 12 28 28 H 1.09002 * 109.47398 * 300.00244 * 16 15 14 29 29 H 1.09001 * 109.47194 * 60.00425 * 16 15 14 30 30 H 1.09002 * 109.47153 * 300.00319 * 17 16 15 31 31 H 1.08998 * 109.47533 * 59.99948 * 17 16 15 32 32 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 33 33 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 34 34 H 1.08999 * 109.88021 * 61.67721 * 20 9 7 35 35 H 1.08995 * 109.87878 * 300.51292 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 -0.0005 11 6 -0.4012 -3.9321 -0.6131 12 6 0.7785 -4.7524 -0.0275 13 1 0.5439 -5.1010 0.9783 14 8 1.1011 -5.8532 -0.8798 15 6 1.6318 -6.9864 -0.1897 16 6 1.9386 -8.0981 -1.1952 17 6 2.5062 -9.3116 -0.4563 18 6 2.8136 -10.4231 -1.4617 19 17 3.4832 -11.8530 -0.5911 20 6 1.9319 -3.7275 0.0005 21 1 -0.4850 0.8401 -0.0004 22 1 -0.5989 -1.7586 -0.6162 23 1 -0.5280 -2.4872 1.0176 24 1 -0.3507 -3.8976 -1.7014 25 1 -1.3587 -4.3326 -0.2805 26 1 0.9016 -7.3446 0.5360 27 1 2.5478 -6.7008 0.3274 28 1 1.0223 -8.3836 -1.7119 29 1 2.6687 -7.7401 -1.9211 30 1 3.4224 -9.0264 0.0608 31 1 1.7759 -9.6695 0.2694 32 1 1.8976 -10.7084 -1.9792 33 1 3.5442 -10.0650 -2.1871 34 1 2.5278 -3.8646 0.9029 35 1 2.5588 -3.8505 -0.8825 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224588286.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:09:43 Heat of formation + Delta-G solvation = -48.593142 kcal Electronic energy + Delta-G solvation = -15771.293945 eV Core-core repulsion = 13023.355408 eV Total energy + Delta-G solvation = -2747.938537 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.47895 -36.73734 -36.05916 -34.49206 -32.15385 -29.49161 -28.71558 -26.93599 -24.42745 -23.32408 -21.51015 -20.15765 -20.07814 -16.96656 -16.56752 -16.20242 -14.99313 -14.89995 -14.66839 -14.13617 -14.11807 -13.35156 -13.01600 -12.83456 -12.41116 -11.86605 -11.72399 -11.58411 -11.41461 -11.13161 -10.97652 -10.79181 -10.76305 -10.69514 -10.64244 -10.25194 -10.11285 -9.77076 -9.53769 -9.09139 -8.65282 -6.83728 -5.65276 -3.07243 1.95004 3.40673 3.45216 3.47432 3.82618 4.46506 4.47444 4.52845 4.88083 4.94764 5.17136 5.25178 5.38679 5.39988 5.47915 5.50997 5.52176 5.66707 5.76053 5.87261 5.98555 6.01394 6.35008 6.54350 6.59459 6.66152 6.73298 7.49179 7.62691 7.64661 7.85231 8.35732 9.21818 9.82568 10.47041 11.38886 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.058338 B = 0.003273 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.850002 B = 8552.624240 C = 8891.427450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.139 4.139 12 C 0.076 3.924 13 H 0.063 0.937 14 O -0.379 6.379 15 C 0.062 3.938 16 C -0.118 4.118 17 C -0.128 4.128 18 C -0.029 4.029 19 Cl -0.193 7.193 20 C 0.118 3.882 21 H 0.252 0.748 22 H 0.111 0.889 23 H 0.013 0.987 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.020 0.980 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -18.898 -1.589 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.178 4.178 12 C 0.018 3.982 13 H 0.081 0.919 14 O -0.298 6.298 15 C -0.015 4.015 16 C -0.156 4.156 17 C -0.166 4.166 18 C -0.091 4.091 19 Cl -0.166 7.166 20 C -0.008 4.008 21 H 0.063 0.937 22 H 0.128 0.872 23 H 0.031 0.969 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.038 0.962 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.564 -18.777 -1.713 19.028 hybrid contribution 0.572 0.722 0.411 1.009 sum 3.137 -18.055 -1.302 18.371 Atomic orbital electron populations 1.69782 1.04913 1.24820 1.57731 1.24801 0.95759 0.97750 1.02443 0.86044 0.78492 0.83198 0.77601 1.21546 1.21624 1.20730 1.19097 0.90547 0.82373 1.42983 0.90445 1.44400 1.01981 0.99612 1.86982 1.21959 0.84787 0.92244 0.98279 1.23168 0.95313 0.98000 1.01315 1.23247 0.96400 0.85750 0.92765 0.91926 1.87905 1.83427 1.23707 1.34784 1.22404 0.97699 0.86853 0.94513 1.21460 1.02041 0.93394 0.98673 1.21815 1.02723 0.93900 0.98167 1.24385 1.01661 0.86636 0.96466 1.98722 1.88348 1.48625 1.80948 1.21675 0.94353 0.86564 0.98219 0.93682 0.87182 0.96860 0.91165 0.92061 0.93637 0.93388 0.90866 0.90722 0.90416 0.90509 0.88782 0.88733 0.96242 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.09 55.49 0.56 -26.62 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.92 22.25 29.55 -169.99 -5.02 17.22 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.32 10.27 -15.06 -0.15 -6.48 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -16.00 3.39 -170.08 -0.58 -16.58 16 10 C 0.15 3.78 5.89 -2.53 -0.01 3.77 16 11 C -0.14 -2.79 6.81 -24.58 -0.17 -2.96 16 12 C 0.08 1.43 3.45 -24.90 -0.09 1.34 16 13 H 0.06 1.08 7.82 -51.93 -0.41 0.68 16 14 O -0.38 -6.40 10.07 -35.23 -0.35 -6.75 16 15 C 0.06 0.78 5.78 37.16 0.21 0.99 16 16 C -0.12 -1.12 5.58 -26.73 -0.15 -1.27 16 17 C -0.13 -0.98 5.34 -26.74 -0.14 -1.12 16 18 C -0.03 -0.19 6.66 37.15 0.25 0.05 16 19 Cl -0.19 -1.69 29.15 -51.86 -1.51 -3.20 16 20 C 0.12 2.61 7.02 -3.06 -0.02 2.59 16 21 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 22 H 0.11 3.05 5.87 -51.93 -0.31 2.74 16 23 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.52 8.11 -51.93 -0.42 0.10 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 LS Contribution 301.41 15.07 4.54 4.54 Total: -1.00 -30.63 301.41 -8.48 -39.11 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.75 Total: -4.19 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.37 Total: -3.53 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.02 Total: -43.20 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.35 Total: -6.75 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -1.51 Total: -3.20 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.63 -8.48 -39.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224588286.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.485 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds