Wall clock time and date at job start Mon Mar 30 2020 18:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48671 * 111.11135 * 2 1 4 4 C 1.54375 * 104.67311 * 201.10264 * 3 2 1 5 5 C 1.54252 * 105.06229 * 23.77195 * 4 3 2 6 6 C 1.48562 * 110.99496 * 244.58670 * 2 1 3 7 7 H 1.08998 * 110.41206 * 40.14745 * 6 2 1 8 8 C 1.53000 * 110.41365 * 277.81613 * 6 2 1 9 9 O 1.42903 * 109.46723 * 68.04995 * 8 6 2 10 10 C 1.42899 * 113.99745 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.47206 * 30.00563 * 10 9 8 12 12 C 1.50702 * 109.46876 * 150.00272 * 10 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.53000 * 109.47309 * 270.00386 * 10 9 8 21 21 Cl 1.80292 * 109.47199 * 65.00174 * 20 10 9 22 22 H 1.08997 * 109.47267 * 175.41354 * 1 2 3 23 23 H 1.09001 * 109.46716 * 295.41636 * 1 2 3 24 24 H 1.09001 * 109.47083 * 55.40930 * 1 2 3 25 25 H 1.09004 * 110.44022 * 82.26376 * 3 2 1 26 26 H 1.09002 * 110.40637 * 319.92395 * 3 2 1 27 27 H 1.09000 * 110.31988 * 264.87447 * 4 3 2 28 28 H 1.08996 * 110.41006 * 142.71624 * 4 3 2 29 29 H 1.08999 * 110.32896 * 241.10437 * 5 4 3 30 30 H 1.09006 * 110.32167 * 118.89752 * 5 4 3 31 31 H 1.09004 * 109.46992 * 308.05913 * 8 6 2 32 32 H 1.08995 * 109.47210 * 188.05107 * 8 6 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 34 34 H 1.09005 * 109.46994 * 184.99833 * 20 10 9 35 35 H 1.08996 * 109.47227 * 304.99688 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 6 3.4451 1.2499 -0.5377 5 6 3.4431 -0.0540 -1.3618 6 6 2.0013 -0.5952 -1.2528 7 1 1.4085 -0.2727 -2.1087 8 6 2.0105 -2.1221 -1.1563 9 8 0.6660 -2.6061 -1.1348 10 6 0.5617 -4.0285 -1.0463 11 1 1.4193 -4.4225 -0.5009 12 6 -0.7069 -4.3948 -0.3199 13 1 -1.3676 -3.6190 0.0379 14 6 -1.0272 -5.7206 -0.1177 15 7 -0.2229 -6.6653 -0.5537 16 14 -2.6035 -6.1747 0.7759 17 1 -3.3280 -4.9372 1.1616 18 1 -3.4620 -6.9918 -0.1190 19 1 -2.2740 -6.9562 1.9949 20 6 0.5341 -4.6265 -2.4543 21 17 2.1107 -4.3139 -3.2710 22 1 -0.3634 -1.0243 -0.0822 23 1 -0.3633 0.4411 0.9282 24 1 -0.3633 0.5834 -0.8460 25 1 2.0134 1.7916 1.0121 26 1 1.4122 2.0230 -0.6577 27 1 4.1520 1.1745 0.2886 28 1 3.6960 2.0991 -1.1733 29 1 4.1489 -0.7696 -0.9401 30 1 3.6912 0.1554 -2.4024 31 1 2.5203 -2.4253 -0.2418 32 1 2.5325 -2.5376 -2.0182 33 1 -0.4481 -7.5980 -0.4111 34 1 0.3655 -5.7015 -2.3892 35 1 -0.2701 -4.1667 -3.0286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224816931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:01 Heat of formation + Delta-G solvation = -62.511605 kcal Electronic energy + Delta-G solvation = -16777.109766 eV Core-core repulsion = 14028.567679 eV Total energy + Delta-G solvation = -2748.542087 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.88235 -36.75851 -34.65976 -33.20855 -31.88451 -30.32067 -28.54107 -25.47216 -25.14334 -23.86795 -20.99168 -20.62495 -19.89057 -16.70260 -15.98512 -15.60992 -15.18642 -14.78351 -14.39413 -13.63124 -13.50075 -13.33933 -12.69691 -12.25700 -12.11483 -12.01124 -11.62619 -11.36784 -11.23549 -11.07031 -11.01593 -10.85774 -10.71811 -10.48974 -10.35831 -10.26513 -9.72669 -9.36896 -9.23378 -8.56839 -8.14892 -7.96872 -6.28647 -4.34062 3.18577 3.27730 3.33235 3.50329 4.21858 4.32381 4.63093 4.90365 5.04494 5.12045 5.14787 5.50113 5.67656 5.78643 5.81932 5.88889 5.93957 5.97504 6.07801 6.21078 6.30849 6.32992 6.41204 6.53837 6.59851 6.72323 6.97282 7.25650 7.36644 7.41423 7.68045 8.00804 8.44752 8.85561 9.33714 10.78623 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.007311 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.274315 B = 3829.101394 C = 4818.173514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.504 5.504 3 C 0.028 3.972 4 C -0.122 4.122 5 C -0.119 4.119 6 C 0.067 3.933 7 H 0.053 0.947 8 C 0.065 3.935 9 O -0.385 6.385 10 C 0.215 3.785 11 H 0.031 0.969 12 C -0.509 4.509 13 H 0.073 0.927 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.910 3.090 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.030 4.030 21 Cl -0.253 7.253 22 H 0.101 0.899 23 H 0.057 0.943 24 H 0.017 0.983 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.268 0.732 34 H 0.127 0.873 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 10.585 -1.546 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.228 5.228 3 C -0.101 4.101 4 C -0.160 4.160 5 C -0.157 4.157 6 C -0.041 4.041 7 H 0.071 0.929 8 C -0.012 4.012 9 O -0.305 6.305 10 C 0.158 3.842 11 H 0.048 0.952 12 C -0.548 4.548 13 H 0.091 0.909 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.737 3.263 17 H -0.194 1.194 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.092 4.092 21 Cl -0.227 7.227 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.411 10.218 -1.139 11.188 hybrid contribution -0.860 -0.060 -0.369 0.938 sum 3.551 10.159 -1.508 10.867 Atomic orbital electron populations 1.22623 0.87136 1.04599 0.99112 1.65330 1.09121 1.13408 1.34955 1.23144 0.95059 0.91278 1.00576 1.22259 0.96874 0.97365 0.99518 1.22254 0.96514 0.97028 0.99916 1.22680 0.94666 0.95290 0.91489 0.92893 1.22667 0.86637 0.91248 1.00652 1.87779 1.24023 1.24097 1.94595 1.19947 0.98253 0.76298 0.89684 0.95175 1.21127 1.06015 0.92226 1.35385 0.90917 1.24999 0.97690 0.96026 0.95577 1.69824 1.36745 1.00516 1.45990 0.86232 0.82200 0.78619 0.79252 1.19401 1.20769 1.20689 1.25909 0.80597 1.06986 0.95758 1.98595 1.43368 1.96747 1.84022 0.88014 0.92461 0.96403 0.90593 0.94414 0.91180 0.91752 0.90797 0.91422 0.93898 0.91769 0.92225 0.85548 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.36 60.07 0.56 0.79 16 2 N -0.50 -8.35 5.34 -230.24 -1.23 -9.59 16 3 C 0.03 0.36 6.50 -2.12 -0.01 0.35 16 4 C -0.12 -1.42 7.00 -25.36 -0.18 -1.60 16 5 C -0.12 -1.59 6.55 -25.35 -0.17 -1.76 16 6 C 0.07 1.12 2.67 -66.07 -0.18 0.94 16 7 H 0.05 0.91 7.97 -51.93 -0.41 0.50 16 8 C 0.07 1.29 5.09 37.16 0.19 1.48 16 9 O -0.39 -8.80 7.71 -35.23 -0.27 -9.07 16 10 C 0.22 5.36 2.38 -27.88 -0.07 5.29 16 11 H 0.03 0.82 7.79 -51.93 -0.40 0.42 16 12 C -0.51 -13.60 8.89 -34.44 -0.31 -13.90 16 13 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 14 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 15 N -0.89 -24.07 11.28 55.43 0.63 -23.44 16 16 Si 0.91 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.03 -0.70 6.17 37.16 0.23 -0.47 16 21 Cl -0.25 -5.23 26.09 -51.86 -1.35 -6.59 16 22 H 0.10 2.02 6.02 -51.93 -0.31 1.71 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.02 0.27 7.98 -51.93 -0.41 -0.14 16 25 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.47 7.91 -51.93 -0.41 0.06 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.99 7.86 -51.93 -0.41 0.59 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.06 1.25 5.09 -51.93 -0.26 0.99 16 33 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 34 H 0.13 3.20 5.94 -51.93 -0.31 2.89 16 35 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 290.79 15.07 4.38 4.38 Total: -1.00 -26.76 290.79 -8.32 -35.09 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.44 Total: 1.19 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.02 Total: -7.42 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: -0.60 Total: -33.03 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.27 Total: -9.07 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -5.23 SS G_CDS: -1.35 Total: -6.59 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.76 -8.32 -35.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224816931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.426 kcal (2) G-P(sol) polarization free energy of solvation -26.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds