Wall clock time and date at job start Mon Mar 30 2020 18:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48671 * 111.11135 * 2 1 4 4 C 1.54375 * 104.67311 * 201.10264 * 3 2 1 5 5 C 1.54252 * 105.06229 * 23.77195 * 4 3 2 6 6 C 1.48562 * 110.99496 * 244.58670 * 2 1 3 7 7 H 1.08998 * 110.41206 * 40.14745 * 6 2 1 8 8 C 1.53000 * 110.41365 * 277.81613 * 6 2 1 9 9 O 1.42903 * 109.46723 * 68.04995 * 8 6 2 10 10 C 1.42899 * 113.99745 * 179.97438 * 9 8 6 11 11 H 1.09004 * 109.47206 * 30.00563 * 10 9 8 12 12 C 1.50702 * 109.46876 * 150.00272 * 10 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 10 9 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.53000 * 109.47309 * 270.00386 * 10 9 8 21 21 Cl 1.80292 * 109.47199 * 65.00174 * 20 10 9 22 22 H 1.08997 * 109.47267 * 175.41354 * 1 2 3 23 23 H 1.09001 * 109.46716 * 295.41636 * 1 2 3 24 24 H 1.09001 * 109.47083 * 55.40930 * 1 2 3 25 25 H 1.09004 * 110.44022 * 82.26376 * 3 2 1 26 26 H 1.09002 * 110.40637 * 319.92395 * 3 2 1 27 27 H 1.09000 * 110.31988 * 264.87447 * 4 3 2 28 28 H 1.08996 * 110.41006 * 142.71624 * 4 3 2 29 29 H 1.08999 * 110.32896 * 241.10437 * 5 4 3 30 30 H 1.09006 * 110.32167 * 118.89752 * 5 4 3 31 31 H 1.09004 * 109.46992 * 308.05913 * 8 6 2 32 32 H 1.08995 * 109.47210 * 188.05107 * 8 6 2 33 33 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 34 34 H 1.09005 * 109.46994 * 184.99833 * 20 10 9 35 35 H 1.08996 * 109.47227 * 304.99688 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 6 3.4451 1.2499 -0.5377 5 6 3.4431 -0.0540 -1.3618 6 6 2.0013 -0.5952 -1.2528 7 1 1.4085 -0.2727 -2.1087 8 6 2.0105 -2.1221 -1.1563 9 8 0.6660 -2.6061 -1.1348 10 6 0.5617 -4.0285 -1.0463 11 1 1.4193 -4.4225 -0.5009 12 6 -0.7069 -4.3948 -0.3199 13 1 -1.3676 -3.6190 0.0379 14 6 -1.0272 -5.7206 -0.1177 15 7 -0.2229 -6.6653 -0.5537 16 14 -2.6035 -6.1747 0.7759 17 1 -3.3280 -4.9372 1.1616 18 1 -3.4620 -6.9918 -0.1190 19 1 -2.2740 -6.9562 1.9949 20 6 0.5341 -4.6265 -2.4543 21 17 2.1107 -4.3139 -3.2710 22 1 -0.3634 -1.0243 -0.0822 23 1 -0.3633 0.4411 0.9282 24 1 -0.3633 0.5834 -0.8460 25 1 2.0134 1.7916 1.0121 26 1 1.4122 2.0230 -0.6577 27 1 4.1520 1.1745 0.2886 28 1 3.6960 2.0991 -1.1733 29 1 4.1489 -0.7696 -0.9401 30 1 3.6912 0.1554 -2.4024 31 1 2.5203 -2.4253 -0.2418 32 1 2.5325 -2.5376 -2.0182 33 1 -0.4481 -7.5980 -0.4111 34 1 0.3655 -5.7015 -2.3892 35 1 -0.2701 -4.1667 -3.0286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224816931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:00 Heat of formation + Delta-G solvation = -78.805758 kcal Electronic energy + Delta-G solvation = -16777.816334 eV Core-core repulsion = 14028.567679 eV Total energy + Delta-G solvation = -2749.248654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 247.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17138 -38.49049 -36.45531 -35.17620 -33.04717 -31.88139 -30.22907 -27.22910 -26.63783 -25.29747 -22.83021 -21.77333 -21.21068 -18.65675 -17.60577 -17.15857 -16.69815 -16.20383 -16.00861 -15.25013 -15.04741 -14.60447 -14.34210 -13.90724 -13.72291 -13.38177 -13.17526 -12.97235 -12.82714 -12.68783 -12.44939 -12.28702 -12.21317 -12.05524 -11.80340 -11.54100 -11.31020 -11.21579 -11.16883 -10.56308 -9.78094 -9.38693 -8.30108 -6.43907 1.39600 1.43508 1.56354 1.63883 2.34936 2.99991 3.10316 3.17537 3.77749 3.92724 4.10393 4.28504 4.39667 4.49063 4.53876 4.57459 4.59698 4.69256 4.74367 4.81332 4.93380 4.95845 5.01249 5.07604 5.21091 5.27369 5.34703 5.40360 5.61878 5.98868 6.02402 6.16715 6.51795 6.86781 7.29097 8.76862 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.007311 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.274315 B = 3829.101394 C = 4818.173514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.526 5.526 3 C 0.027 3.973 4 C -0.115 4.115 5 C -0.116 4.116 6 C 0.068 3.932 7 H 0.047 0.953 8 C 0.065 3.935 9 O -0.392 6.392 10 C 0.221 3.779 11 H 0.000 1.000 12 C -0.535 4.535 13 H 0.062 0.938 14 C 0.021 3.979 15 N -0.914 5.914 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.273 1.273 19 H -0.277 1.277 20 C -0.021 4.021 21 Cl -0.228 7.228 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.065 0.935 33 H 0.272 0.728 34 H 0.109 0.891 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 11.890 -1.637 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.251 5.251 3 C -0.101 4.101 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.041 4.041 7 H 0.065 0.935 8 C -0.012 4.012 9 O -0.312 6.312 10 C 0.164 3.836 11 H 0.017 0.983 12 C -0.573 4.573 13 H 0.081 0.919 14 C -0.180 4.180 15 N -0.553 5.553 16 Si 0.797 3.203 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.202 1.202 20 C -0.084 4.084 21 Cl -0.202 7.202 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.044 0.956 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.647 11.538 -1.237 12.500 hybrid contribution -0.846 -0.434 -0.353 1.014 sum 3.801 11.104 -1.591 11.844 Atomic orbital electron populations 1.22474 0.87703 1.02429 1.00246 1.65285 1.08855 1.16042 1.34874 1.23245 0.95898 0.89226 1.01710 1.22273 0.95981 0.97118 0.99878 1.22283 0.93854 0.97816 1.01516 1.22662 0.97012 0.92911 0.91488 0.93476 1.22798 0.84978 0.93702 0.99740 1.87790 1.26043 1.22763 1.94581 1.19689 0.96414 0.77440 0.90038 0.98277 1.21329 1.06737 0.92592 1.36642 0.91940 1.25747 1.00562 0.95680 0.95964 1.69916 1.38109 1.00881 1.46369 0.85268 0.78526 0.78275 0.78211 1.19254 1.19785 1.20216 1.25503 0.82025 1.05562 0.95309 1.98588 1.41602 1.96642 1.83368 0.91751 0.91034 0.95551 0.89461 0.93494 0.90349 0.89116 0.91175 0.89633 0.95567 0.91685 0.91840 0.87335 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.36 127.69 1.19 1.86 16 2 N -0.53 -16.97 5.34 -882.36 -4.72 -21.68 16 3 C 0.03 0.63 6.50 86.43 0.56 1.19 16 4 C -0.11 -2.29 7.00 31.49 0.22 -2.07 16 5 C -0.12 -2.87 6.55 31.49 0.21 -2.67 16 6 C 0.07 2.21 2.67 45.06 0.12 2.33 16 7 H 0.05 1.59 7.97 -2.39 -0.02 1.57 16 8 C 0.06 2.59 5.09 71.98 0.37 2.96 16 9 O -0.39 -18.43 7.71 -148.98 -1.15 -19.58 16 10 C 0.22 11.38 2.38 29.85 0.07 11.45 16 11 H 0.00 -0.03 7.79 -2.38 -0.02 -0.04 16 12 C -0.54 -29.30 8.89 25.60 0.23 -29.07 16 13 H 0.06 3.47 7.81 -2.91 -0.02 3.44 16 14 C 0.02 1.09 5.29 84.66 0.45 1.54 16 15 N -0.91 -49.84 11.28 21.45 0.24 -49.60 16 16 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 C -0.02 -1.00 6.17 71.98 0.44 -0.56 16 21 Cl -0.23 -9.37 26.09 -2.72 -0.07 -9.44 16 22 H 0.06 2.63 6.02 -2.39 -0.01 2.61 16 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.03 0.80 7.98 -2.39 -0.02 0.78 16 25 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.04 7.91 -2.39 -0.02 1.02 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.78 7.86 -2.39 -0.02 1.76 16 30 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.03 1.12 8.09 -2.38 -0.02 1.10 16 32 H 0.07 2.55 5.09 -2.39 -0.01 2.53 16 33 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 34 H 0.11 5.60 5.94 -2.38 -0.01 5.58 16 35 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -57.51 290.79 1.25 -56.26 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.06 Total: 13.04 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 3.86 Total: -13.03 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -4.47 Total: -71.28 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -1.15 Total: -19.58 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 17 Polarization: -9.37 SS G_CDS: -0.07 Total: -9.44 kcal Total: -57.51 1.25 -56.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224816931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.549 kcal (2) G-P(sol) polarization free energy of solvation -57.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds