Wall clock time and date at job start Mon Mar 30 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47107 * 2 1 4 4 H 1.09005 * 109.47391 * 301.95680 * 3 2 1 5 5 C 1.53007 * 109.47050 * 61.95690 * 3 2 1 6 6 C 1.53001 * 109.47033 * 186.69313 * 5 3 2 7 7 F 1.39904 * 109.47114 * 174.03695 * 6 5 3 8 8 F 1.39891 * 109.47725 * 294.04439 * 6 5 3 9 9 C 1.53002 * 109.47229 * 181.95706 * 3 2 1 10 10 N 1.46493 * 109.47389 * 65.00032 * 9 3 2 11 11 C 1.36940 * 119.99987 * 90.00037 * 10 9 3 12 12 H 1.08000 * 120.00164 * 306.51877 * 11 10 9 13 13 C 1.38810 * 120.00144 * 126.52275 * 11 10 9 14 14 N 1.31612 * 120.00059 * 166.21272 * 13 11 10 15 15 Si 1.86803 * 119.99890 * 346.21108 * 13 11 10 16 16 H 1.48498 * 109.46985 * 93.20278 * 15 13 11 17 17 H 1.48499 * 109.47223 * 213.20605 * 15 13 11 18 18 H 1.48503 * 109.47149 * 333.20733 * 15 13 11 19 19 C 1.46496 * 120.00167 * 270.00508 * 10 9 3 20 20 C 1.53009 * 117.50186 * 182.56866 * 19 10 9 21 21 C 1.52998 * 59.99905 * 252.50772 * 20 19 10 22 22 H 1.08997 * 109.47022 * 293.71411 * 1 2 3 23 23 H 1.09002 * 109.46916 * 53.70941 * 1 2 3 24 24 H 1.08996 * 109.47162 * 173.71188 * 1 2 3 25 25 H 1.09004 * 109.47209 * 240.00385 * 2 1 3 26 26 H 1.08998 * 109.47172 * 119.99984 * 2 1 3 27 27 H 1.09001 * 109.46718 * 66.70122 * 5 3 2 28 28 H 1.08999 * 109.46864 * 306.69509 * 5 3 2 29 29 H 1.09005 * 109.47052 * 54.04184 * 6 5 3 30 30 H 1.09001 * 109.47328 * 185.00261 * 9 3 2 31 31 H 1.08998 * 109.46810 * 305.00088 * 9 3 2 32 32 H 0.97004 * 119.99788 * 179.97438 * 14 13 11 33 33 H 1.09008 * 115.54975 * 328.27347 * 19 10 9 34 34 H 1.08997 * 117.49103 * 0.02562 * 20 19 10 35 35 H 1.08998 * 117.49671 * 145.01656 * 20 19 10 36 36 H 1.08997 * 117.49566 * 252.50748 * 21 20 19 37 37 H 1.09004 * 117.51738 * 107.47758 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6483 1.9664 -0.8719 5 6 1.5706 2.1494 1.2732 6 6 1.9361 3.6331 1.1970 7 9 1.3892 4.3051 2.2955 8 9 3.3281 3.7719 1.2112 9 6 3.5692 1.4428 -0.0493 10 7 4.0170 0.8735 -1.3226 11 6 4.2103 1.6879 -2.4064 12 1 3.4198 2.3464 -2.7349 13 6 5.4221 1.6669 -3.0830 14 7 5.5244 2.2316 -4.2674 15 14 6.9078 0.8372 -2.3124 16 1 6.9849 -0.5710 -2.7773 17 1 8.1417 1.5594 -2.7137 18 1 6.7778 0.8636 -0.8333 19 6 4.2578 -0.5670 -1.4366 20 6 4.7817 -1.0921 -2.7749 21 6 3.3353 -1.3668 -2.3587 22 1 -0.3633 0.4133 0.9409 23 1 -0.3633 0.6083 -0.8283 24 1 -0.3633 -1.0214 -0.1126 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0568 1.6995 2.1388 28 1 0.4897 2.0459 1.3688 29 1 1.5380 4.0586 0.2758 30 1 3.9355 2.4655 0.0403 31 1 3.9593 0.8439 0.7736 32 1 6.3715 2.2173 -4.7400 33 1 4.6117 -1.0577 -0.5299 34 1 4.9475 -0.3655 -3.5703 35 1 5.4804 -1.9282 -2.7488 36 1 3.0825 -2.3838 -2.0587 37 1 2.5488 -0.8212 -2.8802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595301708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:21 Heat of formation + Delta-G solvation = -65.896079 kcal Electronic energy + Delta-G solvation = -19414.637695 eV Core-core repulsion = 16249.985261 eV Total energy + Delta-G solvation = -3164.652434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.144 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.71111 -46.71850 -37.97358 -35.95424 -32.71728 -31.40086 -30.61974 -27.18277 -24.31039 -22.78880 -22.66499 -21.62401 -19.73885 -19.67906 -17.23837 -16.95250 -16.74591 -16.12156 -15.34475 -14.64220 -13.89438 -13.84503 -13.64949 -13.59047 -13.33699 -13.06134 -12.97481 -12.38386 -12.28729 -11.77097 -11.69406 -11.33275 -11.09849 -10.98224 -10.70898 -10.57936 -10.40014 -10.28077 -10.14536 -9.81371 -9.59598 -9.37016 -9.02948 -8.38968 -6.43825 -5.99180 -3.66253 3.40805 3.50763 3.59671 4.08926 4.53645 4.54828 4.72836 4.80151 4.87321 5.05165 5.30372 5.38695 5.48143 5.53401 5.66507 5.83041 5.86625 5.87036 6.03570 6.08205 6.13620 6.18296 6.27315 6.43789 6.48114 6.56083 6.60830 6.83616 6.87113 6.99457 7.03771 7.30114 8.12289 8.50365 9.04887 9.66939 10.16973 11.10850 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.008834 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.158267 B = 3168.981609 C = 3957.401556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.105 4.105 4 H 0.076 0.924 5 C -0.164 4.164 6 C 0.259 3.741 7 F -0.217 7.217 8 F -0.195 7.195 9 C 0.134 3.866 10 N -0.571 5.571 11 C -0.280 4.280 12 H 0.070 0.930 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.886 3.114 16 H -0.270 1.270 17 H -0.307 1.307 18 H -0.270 1.270 19 C 0.113 3.887 20 C -0.203 4.203 21 C -0.215 4.215 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -2.984 9.572 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.126 4.126 4 H 0.094 0.906 5 C -0.203 4.203 6 C 0.206 3.794 7 F -0.199 7.199 8 F -0.176 7.176 9 C 0.009 3.991 10 N -0.290 5.290 11 C -0.409 4.409 12 H 0.087 0.913 13 C -0.149 4.149 14 N -0.541 5.541 15 Si 0.715 3.285 16 H -0.195 1.195 17 H -0.235 1.235 18 H -0.195 1.195 19 C 0.005 3.995 20 C -0.241 4.241 21 C -0.256 4.256 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.595 -2.874 9.465 12.472 hybrid contribution 0.853 -0.446 0.284 1.004 sum -6.742 -3.320 9.749 12.310 Atomic orbital electron populations 1.21843 0.97169 1.00916 1.00952 1.21668 0.94385 0.96614 1.03275 1.21782 1.00086 0.95831 0.94918 0.90571 1.22777 1.03277 0.92267 1.01947 1.22067 0.75449 0.94094 0.87828 1.92942 1.85642 1.82758 1.58553 1.92917 1.31348 1.96594 1.96784 1.21486 0.90462 0.99781 0.87384 1.43554 1.77501 0.99773 1.08179 1.18525 0.97443 1.19550 1.05342 0.91259 1.25837 0.97820 0.95647 0.95596 1.69849 1.26010 1.45794 1.12423 0.86840 0.81765 0.79272 0.80634 1.19541 1.23494 1.19492 1.21290 1.00680 0.85672 0.91819 1.23602 0.95773 1.03111 1.01630 1.23389 0.94279 0.99739 1.08199 0.93481 0.92927 0.93443 0.89012 0.93138 0.90051 0.89300 0.87409 0.90050 0.94838 0.92623 0.89745 0.86177 0.90755 0.91175 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.44 37.16 0.35 -1.51 16 2 C -0.12 -1.79 5.07 -26.73 -0.14 -1.92 16 3 C -0.11 -1.66 2.08 -90.62 -0.19 -1.84 16 4 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 5 C -0.16 -2.11 4.85 -26.73 -0.13 -2.24 16 6 C 0.26 3.56 5.25 37.16 0.20 3.76 16 7 F -0.22 -3.07 17.34 2.25 0.04 -3.03 16 8 F -0.20 -3.27 14.21 2.25 0.03 -3.24 16 9 C 0.13 2.60 4.86 -4.04 -0.02 2.58 16 10 N -0.57 -12.96 1.94 -165.66 -0.32 -13.28 16 11 C -0.28 -7.50 9.26 -15.06 -0.14 -7.64 16 12 H 0.07 2.04 8.06 -52.49 -0.42 1.61 16 13 C 0.05 1.48 3.80 -17.43 -0.07 1.41 16 14 N -0.90 -26.73 13.97 55.49 0.78 -25.95 16 15 Si 0.89 22.17 24.48 -169.99 -4.16 18.01 16 16 H -0.27 -6.40 5.52 56.52 0.31 -6.08 16 17 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 18 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 19 C 0.11 2.37 3.97 -67.93 -0.27 2.10 16 20 C -0.20 -4.42 6.46 -26.73 -0.17 -4.60 16 21 C -0.22 -4.14 8.28 -26.73 -0.22 -4.36 16 22 H 0.05 0.51 6.67 -51.93 -0.35 0.16 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.53 4.26 -51.93 -0.22 1.31 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 0.98 6.30 -51.93 -0.33 0.66 16 29 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.69 5.09 -51.93 -0.26 1.42 16 31 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 1.64 8.14 -51.92 -0.42 1.22 16 34 H 0.12 3.04 4.91 -51.93 -0.26 2.79 16 35 H 0.07 1.49 7.66 -51.93 -0.40 1.10 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.85 7.94 -51.93 -0.41 1.44 16 LS Contribution 287.37 15.07 4.33 4.33 Total: -1.00 -28.81 287.37 -5.77 -34.58 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.67 Total: 2.85 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.80 Total: -14.27 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.45 Total: -39.23 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.07 Total: -6.27 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.16 Total: 18.01 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.81 -5.77 -34.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.317 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds