Wall clock time and date at job start Mon Mar 30 2020 18:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32577 * 120.39373 * 2 1 4 4 C 1.31760 * 121.00765 * 179.97438 * 3 2 1 5 5 N 1.31780 * 121.83517 * 0.02562 * 4 3 2 6 6 C 1.32968 * 120.68222 * 359.97438 * 5 4 3 7 7 N 1.38542 * 120.52872 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00199 * 5.06715 * 7 6 5 9 9 C 1.52998 * 109.47243 * 185.01522 * 8 7 6 10 10 C 1.50703 * 115.54926 * 275.73523 * 9 8 7 11 11 H 1.08000 * 119.99920 * 114.61854 * 10 9 8 12 12 C 1.37868 * 120.00165 * 294.61937 * 10 9 8 13 13 N 1.31525 * 119.99963 * 352.66440 * 12 10 9 14 14 Si 1.86800 * 120.00193 * 172.66594 * 12 10 9 15 15 H 1.48502 * 109.47055 * 59.99835 * 14 12 10 16 16 H 1.48499 * 109.47146 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46842 * 299.99931 * 14 12 10 18 18 C 1.52998 * 117.49800 * 130.02357 * 9 8 7 19 19 C 1.53000 * 60.00271 * 252.51056 * 18 9 8 20 20 C 1.38073 * 120.39863 * 179.97438 * 2 1 3 21 21 C 1.50693 * 120.83591 * 0.04376 * 20 2 1 22 22 H 1.08997 * 109.47022 * 89.99890 * 1 2 3 23 23 H 1.08999 * 109.46665 * 209.99636 * 1 2 3 24 24 H 1.08992 * 109.47035 * 329.99725 * 1 2 3 25 25 H 1.08000 * 119.08539 * 180.02562 * 4 3 2 26 26 H 0.97002 * 119.99308 * 185.06475 * 7 6 5 27 27 H 1.09000 * 109.47134 * 305.01595 * 8 7 6 28 28 H 1.09002 * 109.47079 * 65.01721 * 8 7 6 29 29 H 0.96996 * 120.00086 * 185.00611 * 13 12 10 30 30 H 1.08997 * 117.49879 * 0.02562 * 18 9 8 31 31 H 1.09000 * 117.49328 * 145.02479 * 18 9 8 32 32 H 1.08995 * 117.50304 * 252.51014 * 19 18 9 33 33 H 1.08998 * 117.51570 * 107.47790 * 19 18 9 34 34 H 1.09004 * 109.47208 * 84.66318 * 21 20 2 35 35 H 1.09007 * 109.47088 * 204.65838 * 21 20 2 36 36 H 1.08997 * 109.47236 * 324.66180 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1778 1.1436 0.0000 4 6 3.4954 1.1577 0.0005 5 7 4.2024 0.0456 0.0005 6 6 3.6015 -1.1405 0.0005 7 7 4.3479 -2.3076 0.0000 8 6 5.8073 -2.2438 0.1115 9 6 6.3922 -3.6495 -0.0390 10 6 6.4213 -4.4795 1.2185 11 1 5.8196 -5.3736 1.2895 12 6 7.2160 -4.0975 2.2784 13 7 8.0558 -3.0944 2.1426 14 14 7.1001 -5.0046 3.9072 15 1 7.4393 -6.4358 3.7021 16 1 8.0519 -4.4049 4.8766 17 1 5.7174 -4.8947 4.4377 18 6 7.5388 -3.8346 -1.0349 19 6 6.1467 -4.3790 -1.3614 20 6 2.2057 -1.1909 0.0005 21 6 1.4806 -2.5119 0.0001 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 4.0102 2.1071 0.0009 26 1 3.9042 -3.1670 -0.0741 27 1 6.2038 -1.5994 -0.6730 28 1 6.0799 -1.8394 1.0863 29 1 8.6660 -2.8719 2.8630 30 1 7.8767 -2.9549 -1.5826 31 1 8.3146 -4.5568 -0.7806 32 1 6.0067 -5.4592 -1.3219 33 1 5.5682 -3.8575 -2.1239 34 1 1.2226 -2.7845 -1.0233 35 1 2.1242 -3.2798 0.4294 36 1 0.5705 -2.4269 0.5939 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882296607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:09:54 Heat of formation + Delta-G solvation = 62.885032 kcal Electronic energy + Delta-G solvation = -17768.998469 eV Core-core repulsion = 15060.619589 eV Total energy + Delta-G solvation = -2708.378880 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60454 -37.29899 -35.09053 -34.27881 -32.10782 -31.28465 -28.91914 -27.07083 -25.91642 -24.88215 -22.34072 -21.55194 -20.99731 -19.37696 -17.50905 -16.99951 -16.01893 -15.07272 -14.70053 -14.59160 -14.11655 -14.01653 -13.65014 -13.15949 -12.96326 -12.82828 -12.65240 -12.37573 -12.12767 -11.76510 -11.60540 -11.03549 -11.00314 -10.60403 -10.35026 -10.32607 -10.24895 -9.57724 -9.21865 -8.95319 -8.72615 -8.62894 -8.25320 -7.38153 -6.12559 -4.19761 1.42169 1.84359 3.24242 3.30552 3.31925 3.71089 4.28599 4.31787 4.47247 4.70576 5.02320 5.12078 5.21752 5.27428 5.38250 5.52955 5.65090 5.69442 5.79246 5.93783 5.97648 6.14302 6.24817 6.26682 6.44041 6.57818 6.63762 6.70595 6.95532 7.01333 7.31443 7.34581 7.46015 7.79262 7.82178 8.18687 8.29475 8.76970 8.82872 9.45481 10.95036 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.006209 C = 0.005939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.888964 B = 4508.387436 C = 4713.369021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.190 3.810 3 N -0.579 5.579 4 C 0.332 3.668 5 N -0.577 5.577 6 C 0.445 3.555 7 N -0.684 5.684 8 C 0.170 3.830 9 C 0.032 3.968 10 C -0.502 4.502 11 H 0.060 0.940 12 C 0.073 3.927 13 N -0.874 5.874 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.163 4.163 19 C -0.209 4.209 20 C -0.270 4.270 21 C -0.095 4.095 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.187 0.813 26 H 0.408 0.592 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.264 0.736 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.247 3.117 -4.287 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.048 3.952 3 N -0.300 5.300 4 C 0.041 3.959 5 N -0.302 5.302 6 C 0.198 3.802 7 N -0.312 5.312 8 C 0.048 3.952 9 C 0.031 3.969 10 C -0.539 4.539 11 H 0.078 0.922 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.201 4.201 19 C -0.247 4.247 20 C -0.281 4.281 21 C -0.153 4.153 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.204 0.796 26 H 0.246 0.754 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.428 4.078 -4.131 11.935 hybrid contribution -0.254 -1.519 0.864 1.766 sum -10.682 2.559 -3.267 11.460 Atomic orbital electron populations 1.20719 0.88989 1.03359 1.02932 1.21063 0.96601 0.87532 0.89961 1.68185 1.10120 1.29624 1.22085 1.24495 0.86563 0.95838 0.88967 1.68057 1.41165 0.97694 1.23314 1.18548 0.87460 0.87548 0.86669 1.45057 1.08166 1.04132 1.73895 1.21063 0.75615 0.96986 1.01581 1.19099 0.97186 0.91829 0.88737 1.20386 1.27379 1.09243 0.96909 0.92202 1.24978 0.94966 0.94683 0.98468 1.69951 1.20157 1.27682 1.33185 0.86680 0.78062 0.79863 0.83559 1.20214 1.21167 1.20160 1.22696 0.91310 1.01347 1.04741 1.22887 1.01187 0.99259 1.01324 1.20644 0.93397 0.97767 1.16250 1.20493 0.99838 0.93177 1.01815 0.90345 0.90453 0.90558 0.79593 0.75378 0.93887 0.90178 0.92660 0.91603 0.89953 0.90367 0.91515 0.91676 0.91685 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.83 36.01 0.35 -0.74 16 2 C 0.19 2.86 6.81 -82.33 -0.56 2.30 16 3 N -0.58 -9.49 10.37 -10.88 -0.11 -9.60 16 4 C 0.33 5.54 12.28 -92.20 -1.13 4.40 16 5 N -0.58 -11.19 9.69 -13.81 -0.13 -11.32 16 6 C 0.44 8.39 7.49 -154.78 -1.16 7.23 16 7 N -0.68 -13.37 5.50 -60.26 -0.33 -13.70 16 8 C 0.17 3.86 5.57 -4.04 -0.02 3.84 16 9 C 0.03 0.76 1.32 -155.66 -0.20 0.55 16 10 C -0.50 -12.97 8.82 -34.44 -0.30 -13.27 16 11 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 12 C 0.07 1.94 5.23 -17.82 -0.09 1.85 16 13 N -0.87 -24.13 12.58 55.43 0.70 -23.43 16 14 Si 0.89 20.61 29.55 -169.99 -5.02 15.58 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.16 -3.65 9.88 -26.73 -0.26 -3.91 16 19 C -0.21 -4.27 9.79 -26.73 -0.26 -4.54 16 20 C -0.27 -4.29 5.93 -104.15 -0.62 -4.90 16 21 C -0.10 -1.19 9.24 36.00 0.33 -0.85 16 22 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.08 0.69 6.15 -51.93 -0.32 0.38 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.19 2.46 8.06 -52.49 -0.42 2.03 16 26 H 0.41 7.38 6.50 -40.82 -0.27 7.12 16 27 H 0.04 0.99 7.88 -51.93 -0.41 0.58 16 28 H 0.08 2.10 7.26 -51.93 -0.38 1.72 16 29 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 30 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 31 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.85 6.49 -51.93 -0.34 0.51 16 36 H 0.07 0.72 6.30 -51.93 -0.33 0.39 16 LS Contribution 302.91 15.07 4.56 4.56 Total: -1.00 -28.89 302.91 -9.23 -38.12 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.96 Total: 7.83 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -3.93 Total: -8.04 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.12 Total: -58.06 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.89 -9.23 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882296607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.002 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds