Wall clock time and date at job start Mon Mar 30 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38814 * 120.98234 * 2 1 4 4 N 1.31797 * 120.01518 * 179.97438 * 3 2 1 5 5 N 1.28350 * 122.28387 * 359.66064 * 4 3 2 6 6 C 1.32490 * 122.06935 * 0.64042 * 5 4 3 7 7 N 1.39045 * 120.15459 * 179.67059 * 6 5 4 8 8 C 1.46850 * 111.00334 * 359.72674 * 7 6 5 9 9 C 1.53036 * 109.52384 * 185.83977 * 8 7 6 10 10 C 1.53114 * 109.27799 * 300.81924 * 9 8 7 11 11 C 1.50701 * 109.52177 * 177.56146 * 10 9 8 12 12 H 1.07995 * 120.00071 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99734 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99424 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00279 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47218 * 89.99468 * 15 13 11 17 17 H 1.48504 * 109.47082 * 209.99952 * 15 13 11 18 18 H 1.48502 * 109.46897 * 329.99643 * 15 13 11 19 19 C 1.53120 * 109.16161 * 57.65854 * 10 9 8 20 20 C 1.46846 * 110.99957 * 123.93956 * 7 6 5 21 21 C 1.38564 * 120.98051 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47226 * 270.02294 * 1 2 3 23 23 H 1.09002 * 109.47325 * 30.02423 * 1 2 3 24 24 H 1.08994 * 109.47286 * 150.02543 * 1 2 3 25 25 H 1.07994 * 119.99214 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.45831 * 65.81766 * 8 7 6 27 27 H 1.08998 * 109.45719 * 305.85616 * 8 7 6 28 28 H 1.09004 * 109.50109 * 60.76189 * 9 8 7 29 29 H 1.08997 * 109.49831 * 180.87683 * 9 8 7 30 30 H 1.09002 * 109.52325 * 297.75085 * 10 9 8 31 31 H 0.97009 * 119.99472 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.50493 * 62.28140 * 19 10 9 33 33 H 1.09005 * 109.50270 * 182.40711 * 19 10 9 34 34 H 1.08993 * 109.46639 * 54.14162 * 20 7 6 35 35 H 1.09006 * 109.45299 * 294.17043 * 20 7 6 36 36 H 1.08003 * 121.04824 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2215 1.1901 0.0000 4 7 3.5393 1.1678 0.0005 5 7 4.2064 0.0714 0.0074 6 6 3.6130 -1.1132 0.0020 7 7 4.3750 -2.2762 0.0030 8 6 5.8102 -1.9651 0.0039 9 6 6.6141 -3.2591 -0.1418 10 6 6.2757 -4.1980 1.0194 11 6 7.0190 -5.4978 0.8492 12 1 7.6686 -5.6410 -0.0016 13 6 6.8706 -6.5039 1.7803 14 7 7.5189 -7.6384 1.6314 15 14 5.7476 -6.2560 3.2522 16 1 4.3756 -6.7094 2.9100 17 1 6.2574 -7.0453 4.4022 18 1 5.7171 -4.8162 3.6147 19 6 4.7684 -4.4675 1.0249 20 6 4.0179 -3.1384 1.1368 21 6 2.2202 -1.1880 0.0005 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6976 2.1344 -0.0004 26 1 6.0752 -1.4764 0.9414 27 1 6.0381 -1.3002 -0.8292 28 1 6.3596 -3.7413 -1.0857 29 1 7.6795 -3.0294 -0.1255 30 1 6.5658 -3.7320 1.9611 31 1 7.4142 -8.3463 2.2863 32 1 4.4849 -4.9686 0.0994 33 1 4.5151 -5.1011 1.8750 34 1 2.9442 -3.3256 1.1266 35 1 4.2915 -2.6441 2.0690 36 1 1.7137 -2.1418 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893118708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:05 Heat of formation + Delta-G solvation = 61.494103 kcal Electronic energy + Delta-G solvation = -17929.532116 eV Core-core repulsion = 15221.092921 eV Total energy + Delta-G solvation = -2708.439195 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20241 -38.62379 -34.69544 -34.49504 -32.12833 -30.56084 -30.28168 -28.33900 -26.14749 -24.44215 -22.91217 -22.18505 -21.26310 -19.05705 -17.60837 -17.03485 -16.64719 -16.48540 -15.30232 -14.67857 -14.29958 -13.97781 -13.71504 -13.42208 -13.21518 -13.15060 -12.95378 -12.71140 -12.34940 -12.09222 -11.72101 -11.11418 -11.07987 -10.64159 -10.41805 -10.21418 -10.02536 -9.86101 -9.70229 -9.59695 -9.14341 -9.01034 -8.56748 -8.20182 -6.09795 -4.08599 0.78497 0.99513 3.20424 3.32180 3.33022 3.41973 3.69835 4.23911 4.36784 4.46840 4.60822 4.72110 4.78130 5.17553 5.19210 5.26493 5.30796 5.47017 5.53305 5.58355 5.72099 5.80830 5.85002 5.94833 6.03548 6.12375 6.23425 6.37847 6.63758 6.65402 6.80668 7.04820 7.21082 7.22757 7.52207 7.73489 8.50565 8.82037 8.95250 9.52514 11.03718 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.038513 B = 0.005733 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.856822 B = 4883.102610 C = 5321.679062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C 0.001 3.999 4 N -0.220 5.220 5 N -0.291 5.291 6 C 0.270 3.730 7 N -0.463 5.463 8 C 0.063 3.937 9 C -0.100 4.100 10 C 0.011 3.989 11 C -0.510 4.510 12 H 0.075 0.925 13 C 0.069 3.931 14 N -0.901 5.901 15 Si 0.883 3.117 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.267 1.267 19 C -0.119 4.119 20 C 0.059 3.941 21 C -0.142 4.142 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.166 0.834 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.042 0.958 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.576 13.812 -1.739 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.167 4.167 4 N -0.060 5.060 5 N -0.140 5.140 6 C 0.031 3.969 7 N -0.181 5.181 8 C -0.063 4.063 9 C -0.138 4.138 10 C -0.008 4.008 11 C -0.548 4.548 12 H 0.093 0.907 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.714 3.286 16 H -0.205 1.205 17 H -0.224 1.224 18 H -0.192 1.192 19 C -0.156 4.156 20 C -0.066 4.066 21 C -0.174 4.174 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.183 0.817 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.135 14.136 -2.073 19.408 hybrid contribution -1.890 -0.527 1.373 2.394 sum -15.025 13.610 -0.701 20.284 Atomic orbital electron populations 1.20795 0.89207 1.03761 1.03209 1.21029 0.98105 0.93235 0.95440 1.24013 0.92568 0.98755 1.01388 1.72760 1.07134 1.19478 1.06628 1.73246 1.31044 0.94335 1.15385 1.21722 0.91652 0.91484 0.92011 1.58980 1.07467 1.10492 1.41139 1.22224 0.83482 0.98881 1.01749 1.21593 0.98301 0.93282 1.00609 1.19234 0.90927 0.96135 0.94535 1.21028 1.26759 0.96790 1.10231 0.90673 1.25027 0.95533 0.95062 0.97596 1.69900 1.42593 1.05174 1.36224 0.86903 0.80693 0.78327 0.82699 1.20521 1.22361 1.19187 1.22123 0.98563 0.92934 1.02018 1.22434 1.00217 0.94944 0.89026 1.21886 0.93188 0.99829 1.02498 0.90127 0.90537 0.90635 0.81681 0.93435 0.90258 0.91642 0.91459 0.95650 0.92664 0.90734 0.92559 0.90994 0.93928 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.07 36.00 0.36 -0.35 16 2 C -0.07 -0.70 5.92 -104.29 -0.62 -1.32 16 3 C 0.00 0.01 11.03 -17.35 -0.19 -0.18 16 4 N -0.22 -3.40 11.49 30.57 0.35 -3.05 16 5 N -0.29 -4.98 9.88 31.23 0.31 -4.68 16 6 C 0.27 4.31 6.47 -154.77 -1.00 3.31 16 7 N -0.46 -7.97 4.69 -173.08 -0.81 -8.78 16 8 C 0.06 1.12 4.66 -3.83 -0.02 1.11 16 9 C -0.10 -1.99 5.32 -26.65 -0.14 -2.13 16 10 C 0.01 0.24 1.75 -91.65 -0.16 0.08 16 11 C -0.51 -14.02 9.14 -34.44 -0.31 -14.34 16 12 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 14 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 15 Si 0.88 21.38 24.37 -169.99 -4.14 17.24 16 16 H -0.28 -6.46 6.89 56.52 0.39 -6.07 16 17 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 19 C -0.12 -2.44 4.84 -26.65 -0.13 -2.57 16 20 C 0.06 1.01 5.25 -3.83 -0.02 0.99 16 21 C -0.14 -1.81 9.01 -39.00 -0.35 -2.16 16 22 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 24 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 25 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 27 H 0.08 1.37 7.73 -51.93 -0.40 0.97 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.60 7.19 -51.93 -0.37 0.23 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.06 1.21 3.38 -51.93 -0.18 1.04 16 34 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.15 1.61 7.22 -52.48 -0.38 1.23 16 LS Contribution 285.48 15.07 4.30 4.30 Total: -1.00 -31.26 285.48 -6.98 -38.23 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.08 Total: -1.09 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.68 Total: -15.70 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.62 Total: -42.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.24 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.26 -6.98 -38.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893118708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.728 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds