Wall clock time and date at job start Mon Mar 30 2020 18:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38814 * 120.98234 * 2 1 4 4 N 1.31797 * 120.01518 * 179.97438 * 3 2 1 5 5 N 1.28350 * 122.28387 * 359.66064 * 4 3 2 6 6 C 1.32490 * 122.06935 * 0.64042 * 5 4 3 7 7 N 1.39045 * 120.15459 * 179.67059 * 6 5 4 8 8 C 1.46850 * 111.00334 * 359.72674 * 7 6 5 9 9 C 1.53036 * 109.52384 * 185.83977 * 8 7 6 10 10 C 1.53114 * 109.27799 * 300.81924 * 9 8 7 11 11 C 1.50701 * 109.52177 * 177.56146 * 10 9 8 12 12 H 1.07995 * 120.00071 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99734 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99424 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00279 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47218 * 89.99468 * 15 13 11 17 17 H 1.48504 * 109.47082 * 209.99952 * 15 13 11 18 18 H 1.48502 * 109.46897 * 329.99643 * 15 13 11 19 19 C 1.53120 * 109.16161 * 57.65854 * 10 9 8 20 20 C 1.46846 * 110.99957 * 123.93956 * 7 6 5 21 21 C 1.38564 * 120.98051 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47226 * 270.02294 * 1 2 3 23 23 H 1.09002 * 109.47325 * 30.02423 * 1 2 3 24 24 H 1.08994 * 109.47286 * 150.02543 * 1 2 3 25 25 H 1.07994 * 119.99214 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.45831 * 65.81766 * 8 7 6 27 27 H 1.08998 * 109.45719 * 305.85616 * 8 7 6 28 28 H 1.09004 * 109.50109 * 60.76189 * 9 8 7 29 29 H 1.08997 * 109.49831 * 180.87683 * 9 8 7 30 30 H 1.09002 * 109.52325 * 297.75085 * 10 9 8 31 31 H 0.97009 * 119.99472 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.50493 * 62.28140 * 19 10 9 33 33 H 1.09005 * 109.50270 * 182.40711 * 19 10 9 34 34 H 1.08993 * 109.46639 * 54.14162 * 20 7 6 35 35 H 1.09006 * 109.45299 * 294.17043 * 20 7 6 36 36 H 1.08003 * 121.04824 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2215 1.1901 0.0000 4 7 3.5393 1.1678 0.0005 5 7 4.2064 0.0714 0.0074 6 6 3.6130 -1.1132 0.0020 7 7 4.3750 -2.2762 0.0030 8 6 5.8102 -1.9651 0.0039 9 6 6.6141 -3.2591 -0.1418 10 6 6.2757 -4.1980 1.0194 11 6 7.0190 -5.4978 0.8492 12 1 7.6686 -5.6410 -0.0016 13 6 6.8706 -6.5039 1.7803 14 7 7.5189 -7.6384 1.6314 15 14 5.7476 -6.2560 3.2522 16 1 4.3756 -6.7094 2.9100 17 1 6.2574 -7.0453 4.4022 18 1 5.7171 -4.8162 3.6147 19 6 4.7684 -4.4675 1.0249 20 6 4.0179 -3.1384 1.1368 21 6 2.2202 -1.1880 0.0005 22 1 -0.3634 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6976 2.1344 -0.0004 26 1 6.0752 -1.4764 0.9414 27 1 6.0381 -1.3002 -0.8292 28 1 6.3596 -3.7413 -1.0857 29 1 7.6795 -3.0294 -0.1255 30 1 6.5658 -3.7320 1.9611 31 1 7.4142 -8.3463 2.2863 32 1 4.4849 -4.9686 0.0994 33 1 4.5151 -5.1011 1.8750 34 1 2.9442 -3.3256 1.1266 35 1 4.2915 -2.6441 2.0690 36 1 1.7137 -2.1418 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893118708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:05 Heat of formation + Delta-G solvation = 40.312376 kcal Electronic energy + Delta-G solvation = -17930.450625 eV Core-core repulsion = 15221.092921 eV Total energy + Delta-G solvation = -2709.357704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.26344 -39.99542 -36.24585 -35.41060 -34.04356 -32.03498 -31.63775 -29.11818 -27.84935 -25.55859 -24.40151 -23.56516 -22.56412 -20.67548 -18.90900 -18.71190 -17.99331 -17.46919 -16.55753 -16.43247 -15.66065 -15.24738 -14.98989 -14.84965 -14.60038 -14.11431 -14.07217 -13.90944 -13.68258 -13.36340 -13.14157 -12.86533 -12.34664 -12.15502 -12.01317 -11.77733 -11.69556 -11.39066 -11.05853 -10.93448 -10.69883 -10.66710 -10.53295 -9.44193 -8.29262 -6.33334 -0.13849 0.00896 1.28220 1.35937 1.45565 2.28174 2.32518 2.63445 3.05419 3.27404 3.60620 3.73844 3.79261 3.96866 3.99869 4.04265 4.13350 4.27709 4.41668 4.54534 4.58981 4.65988 4.72532 4.82008 4.84698 4.89187 5.00207 5.05281 5.13601 5.18691 5.37310 5.44042 5.63537 5.70015 5.77494 5.99778 6.31754 6.73330 7.31838 7.79295 8.87913 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.038513 B = 0.005733 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.856822 B = 4883.102610 C = 5321.679062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.052 4.052 3 C 0.010 3.990 4 N -0.257 5.257 5 N -0.329 5.329 6 C 0.249 3.751 7 N -0.471 5.471 8 C 0.078 3.922 9 C -0.093 4.093 10 C 0.009 3.991 11 C -0.517 4.517 12 H 0.032 0.968 13 C 0.011 3.989 14 N -0.951 5.951 15 Si 0.947 3.053 16 H -0.256 1.256 17 H -0.300 1.300 18 H -0.249 1.249 19 C -0.114 4.114 20 C 0.067 3.933 21 C -0.149 4.149 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.265 0.735 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.516 15.769 -0.990 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.063 4.063 3 C -0.159 4.159 4 N -0.096 5.096 5 N -0.176 5.176 6 C 0.010 3.990 7 N -0.189 5.189 8 C -0.049 4.049 9 C -0.131 4.131 10 C -0.009 4.009 11 C -0.555 4.555 12 H 0.051 0.949 13 C -0.186 4.186 14 N -0.591 5.591 15 Si 0.774 3.226 16 H -0.182 1.182 17 H -0.228 1.228 18 H -0.174 1.174 19 C -0.152 4.152 20 C -0.059 4.059 21 C -0.179 4.179 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.104 0.896 25 H 0.221 0.779 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.058 0.942 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.081 16.138 -1.344 23.537 hybrid contribution -0.691 -1.040 1.047 1.630 sum -17.773 15.098 -0.297 23.322 Atomic orbital electron populations 1.20936 0.85667 1.05405 1.04658 1.21511 1.00302 0.91856 0.92606 1.24709 0.91528 1.00990 0.98706 1.72677 1.09260 1.19078 1.08573 1.73121 1.32559 0.95073 1.16888 1.21787 0.92880 0.90669 0.93623 1.58990 1.06686 1.11654 1.41551 1.21944 0.84420 0.97062 1.01485 1.21463 0.98663 0.93942 0.99048 1.19185 0.92467 0.94092 0.95199 1.21325 1.26394 0.99033 1.08776 0.94922 1.25907 0.97247 0.94508 1.00909 1.70061 1.44854 1.06446 1.37788 0.85863 0.79337 0.79125 0.78302 1.18175 1.22758 1.17356 1.21923 0.96753 0.95051 1.01476 1.22335 1.01664 0.92787 0.89089 1.22178 0.91838 1.01734 1.02178 0.88454 0.88400 0.89593 0.77913 0.94125 0.89982 0.92473 0.91884 0.96257 0.92560 0.91338 0.93049 0.87444 0.94211 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.07 71.23 0.72 -0.06 16 2 C -0.05 -0.86 5.92 -19.65 -0.12 -0.97 16 3 C 0.01 0.19 11.03 84.84 0.94 1.12 16 4 N -0.26 -7.51 11.49 -57.20 -0.66 -8.16 16 5 N -0.33 -10.94 9.88 -55.10 -0.54 -11.48 16 6 C 0.25 7.49 6.47 133.11 0.86 8.36 16 7 N -0.47 -15.55 4.69 -701.51 -3.29 -18.84 16 8 C 0.08 2.78 4.66 86.32 0.40 3.18 16 9 C -0.09 -3.80 5.32 30.64 0.16 -3.64 16 10 C 0.01 0.44 1.75 -11.46 -0.02 0.42 16 11 C -0.52 -29.53 9.14 25.60 0.23 -29.29 16 12 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 13 C 0.01 0.64 5.45 84.66 0.46 1.10 16 14 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 15 Si 0.95 43.94 24.37 68.60 1.67 45.61 16 16 H -0.26 -10.94 6.89 99.48 0.69 -10.25 16 17 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 18 H -0.25 -10.78 6.53 99.48 0.65 -10.13 16 19 C -0.11 -4.56 4.84 30.65 0.15 -4.41 16 20 C 0.07 2.13 5.25 86.33 0.45 2.58 16 21 C -0.15 -3.25 9.01 22.65 0.20 -3.05 16 22 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 23 H 0.10 0.35 8.11 -2.39 -0.02 0.33 16 24 H 0.09 0.51 8.11 -2.39 -0.02 0.50 16 25 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 26 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 27 H 0.08 2.87 7.73 -2.39 -0.02 2.85 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.02 0.92 7.19 -2.39 -0.02 0.90 16 31 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.05 2.09 3.38 -2.38 -0.01 2.09 16 34 H 0.11 2.67 6.73 -2.39 -0.02 2.65 16 35 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.17 2.90 7.22 -2.91 -0.02 2.88 16 Total: -1.00 -71.31 285.48 2.91 -68.40 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.99 Total: 8.39 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 4.44 Total: -24.66 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.19 Total: -97.74 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.67 Total: 45.61 kcal Total: -71.31 2.91 -68.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893118708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.709 kcal (2) G-P(sol) polarization free energy of solvation -71.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds