Wall clock time and date at job start Mon Mar 30 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99953 * 2 1 4 4 H 1.48502 * 109.46855 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47165 * 299.99851 * 3 2 1 6 6 H 1.48502 * 109.46896 * 60.00214 * 3 2 1 7 7 C 1.37878 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99968 * 173.37843 * 7 2 1 9 9 C 1.50705 * 120.00020 * 353.37782 * 7 2 1 10 10 C 1.52996 * 115.54813 * 84.90070 * 9 7 2 11 11 N 1.46898 * 109.47356 * 39.53016 * 10 9 7 12 12 C 1.46904 * 110.99848 * 185.41699 * 11 10 9 13 13 H 1.09003 * 109.45655 * 324.99914 * 12 11 10 14 14 C 1.53030 * 109.46097 * 84.96920 * 12 11 10 15 15 C 1.53405 * 109.55205 * 120.00155 * 14 12 11 16 16 H 1.08999 * 110.76290 * 182.92749 * 15 14 12 17 17 C 1.52156 * 107.84707 * 304.30086 * 15 14 12 18 18 C 1.33093 * 113.75606 * 58.27551 * 17 15 14 19 19 C 1.52140 * 113.74908 * 0.02562 * 18 17 15 20 20 H 1.09004 * 110.75888 * 180.34364 * 19 18 17 21 21 C 1.53492 * 107.69285 * 58.39445 * 19 18 17 22 22 C 1.52960 * 109.54807 * 304.18783 * 21 19 18 23 23 C 1.53003 * 117.51765 * 230.59729 * 9 7 2 24 24 C 1.52999 * 117.49940 * 299.22763 * 9 7 2 25 25 H 0.96992 * 120.00389 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47059 * 279.52999 * 10 9 7 27 27 H 1.08998 * 109.47150 * 159.53531 * 10 9 7 28 28 H 1.00893 * 110.99881 * 61.46268 * 11 10 9 29 29 H 1.09001 * 109.45960 * 240.03007 * 14 12 11 30 30 H 1.09007 * 109.45653 * 359.97438 * 14 12 11 31 31 H 1.08000 * 123.11697 * 238.29936 * 17 15 14 32 32 H 1.08003 * 123.11618 * 180.02562 * 18 17 15 33 33 H 1.08990 * 109.45963 * 64.19579 * 21 19 18 34 34 H 1.09007 * 109.45745 * 184.16748 * 21 19 18 35 35 H 1.09005 * 109.45217 * 239.96837 * 22 21 19 36 36 H 1.08996 * 109.46006 * 120.01196 * 22 21 19 37 37 H 1.08999 * 117.49980 * 214.97240 * 23 9 7 38 38 H 1.09002 * 117.49755 * 359.97438 * 23 9 7 39 39 H 1.09004 * 117.50034 * 359.97438 * 24 9 7 40 40 H 1.08997 * 117.50077 * 144.97849 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1973 -0.1073 9 6 1.2585 -2.4948 0.1516 10 6 0.6887 -3.0826 -1.1409 11 7 1.6522 -2.8901 -2.2329 12 6 1.0870 -3.3267 -3.5166 13 1 0.4433 -4.1913 -3.3547 14 6 0.2669 -2.1876 -4.1264 15 6 0.8546 -1.8051 -5.4908 16 1 0.3163 -0.9602 -5.9202 17 6 2.3228 -1.4623 -5.2866 18 6 3.0361 -2.4530 -4.7564 19 6 2.2247 -3.7084 -4.4729 20 1 2.8533 -4.4840 -4.0352 21 6 1.6061 -4.1733 -5.7984 22 6 0.7865 -3.0346 -6.4078 23 6 1.7568 -3.4761 1.2145 24 6 0.4551 -2.7032 1.4369 25 1 -0.4850 0.8399 -0.0004 26 1 -0.2459 -2.5790 -1.3880 27 1 0.5022 -4.1478 -1.0043 28 1 2.5193 -3.3679 -2.0384 29 1 -0.7660 -2.5117 -4.2538 30 1 0.2967 -1.3232 -3.4629 31 1 2.7468 -0.5038 -5.5473 32 1 4.0926 -2.3731 -4.5469 33 1 2.3994 -4.4592 -6.4889 34 1 0.9574 -5.0301 -5.6157 35 1 -0.2512 -3.3510 -6.5146 36 1 1.1909 -2.7800 -7.3875 37 1 1.6785 -4.5405 0.9930 38 1 2.6246 -3.1812 1.8044 39 1 0.4665 -1.8998 2.1735 40 1 -0.4796 -3.2589 1.3617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926345818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:36 Heat of formation + Delta-G solvation = 36.634359 kcal Electronic energy + Delta-G solvation = -18762.405823 eV Core-core repulsion = 16156.428972 eV Total energy + Delta-G solvation = -2605.976851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13762 -36.74758 -33.79174 -31.71160 -30.67867 -30.49775 -28.54886 -25.39111 -24.08621 -21.92181 -21.37099 -21.02150 -20.51419 -18.91784 -16.48175 -16.06208 -15.67111 -15.61136 -14.55328 -14.42666 -14.01364 -13.29276 -13.07030 -12.64680 -12.44608 -12.00719 -11.87428 -11.76050 -11.69559 -11.55243 -11.24390 -10.91601 -10.86967 -10.58776 -10.38362 -10.10793 -9.98666 -9.81133 -9.51505 -9.29449 -8.71320 -8.51684 -8.23147 -7.93395 -7.26755 -5.83423 -3.82603 2.70556 3.39984 3.47911 3.51982 4.57343 4.73148 4.93774 4.96249 5.19569 5.43306 5.43522 5.48130 5.50553 5.53307 5.73818 5.77335 5.80141 5.86282 6.03806 6.11549 6.22049 6.26163 6.35473 6.37566 6.45094 6.46707 6.48459 6.59999 6.70163 6.80620 6.96833 7.02055 7.08993 7.18100 7.38409 7.54311 7.58937 8.08313 8.19901 8.41303 8.67423 9.12960 9.79115 11.27237 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.007993 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.272015 B = 3502.294460 C = 4167.302602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.073 3.927 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.289 1.289 7 C -0.457 4.457 8 H 0.056 0.944 9 C 0.051 3.949 10 C 0.110 3.890 11 N -0.647 5.647 12 C 0.098 3.902 13 H 0.029 0.971 14 C -0.104 4.104 15 C -0.058 4.058 16 H 0.073 0.927 17 C -0.157 4.157 18 C -0.140 4.140 19 C -0.062 4.062 20 H 0.073 0.927 21 C -0.108 4.108 22 C -0.110 4.110 23 C -0.220 4.220 24 C -0.160 4.160 25 H 0.254 0.746 26 H 0.069 0.931 27 H -0.011 1.011 28 H 0.328 0.672 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -6.794 -10.527 12.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.713 3.287 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.495 4.495 8 H 0.074 0.926 9 C 0.050 3.950 10 C -0.019 4.019 11 N -0.277 5.277 12 C -0.013 4.013 13 H 0.047 0.953 14 C -0.142 4.142 15 C -0.077 4.077 16 H 0.091 0.909 17 C -0.175 4.175 18 C -0.158 4.158 19 C -0.081 4.081 20 H 0.091 0.909 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.257 4.257 24 C -0.198 4.198 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.007 0.993 28 H 0.146 0.854 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.354 -6.017 -10.618 12.279 hybrid contribution 0.406 0.053 0.251 0.480 sum 1.760 -5.964 -10.368 12.089 Atomic orbital electron populations 1.70016 1.05719 1.25651 1.50816 1.24828 0.94623 0.98359 0.95065 0.86670 0.80300 0.84601 0.77127 1.19989 1.21334 1.21564 1.20163 0.92467 0.88252 1.48632 0.92597 1.18905 0.96969 0.93765 0.85377 1.21496 0.95481 0.93451 0.91509 1.60379 1.05838 1.61469 1.00016 1.21559 0.94060 0.95021 0.90638 0.95298 1.21774 0.96810 1.00276 0.95380 1.20657 0.94335 0.96754 0.95962 0.90862 1.23592 0.94928 0.97840 1.01141 1.23460 0.98264 0.95181 0.98914 1.20837 0.95966 0.96087 0.95241 0.90900 1.21584 0.98988 0.97746 0.96254 1.21647 0.99675 0.95231 0.98238 1.23082 0.98470 0.95423 1.08734 1.22483 0.91983 1.01137 1.04169 0.93669 0.91278 0.99292 0.85427 0.93089 0.89178 0.87013 0.86883 0.92157 0.92163 0.92140 0.92393 0.92232 0.90654 0.90158 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 12.95 55.43 0.72 -24.56 16 2 C 0.07 2.02 5.39 -17.82 -0.10 1.92 16 3 Si 0.88 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.46 -12.42 8.15 -34.44 -0.28 -12.70 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.05 1.24 1.74 -155.66 -0.27 0.97 16 10 C 0.11 2.46 5.54 -3.83 -0.02 2.44 16 11 N -0.65 -13.10 5.07 -106.46 -0.54 -13.64 16 12 C 0.10 1.66 2.39 -67.47 -0.16 1.50 16 13 H 0.03 0.50 7.86 -51.93 -0.41 0.09 16 14 C -0.10 -1.81 5.19 -26.51 -0.14 -1.95 16 15 C -0.06 -0.86 3.59 -90.56 -0.32 -1.19 16 16 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.16 -2.42 9.81 -35.38 -0.35 -2.77 16 18 C -0.14 -2.13 9.48 -35.38 -0.34 -2.46 16 19 C -0.06 -0.90 2.95 -90.57 -0.27 -1.17 16 20 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 21 C -0.11 -1.32 5.67 -26.50 -0.15 -1.47 16 22 C -0.11 -1.36 5.67 -26.48 -0.15 -1.51 16 23 C -0.22 -4.85 9.88 -26.73 -0.26 -5.12 16 24 C -0.16 -3.81 9.48 -26.73 -0.25 -4.07 16 25 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.07 1.71 7.92 -51.93 -0.41 1.30 16 27 H -0.01 -0.23 7.94 -51.93 -0.41 -0.64 16 28 H 0.33 6.41 8.39 -39.30 -0.33 6.08 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.94 7.86 -51.93 -0.41 1.53 16 31 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 38 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -28.11 315.50 -10.16 -38.27 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.01 Total: 5.96 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -3.06 Total: -27.58 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.18 Total: -38.21 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.11 -10.16 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926345818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.903 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds