Wall clock time and date at job start Mon Mar 30 2020 18:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38206 * 119.90420 * 2 1 4 4 N 1.32220 * 120.10307 * 179.97438 * 3 2 1 5 5 C 1.32679 * 119.90768 * 359.97438 * 4 3 2 6 6 N 1.39007 * 120.09020 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00105 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.35778 * 324.82006 * 7 6 5 9 9 C 1.52957 * 109.41809 * 84.64552 * 7 6 5 10 10 C 1.53662 * 109.32881 * 183.83377 * 9 7 6 11 11 C 1.51263 * 108.30946 * 305.13690 * 10 9 7 12 12 C 1.37874 * 120.85227 * 231.37817 * 11 10 9 13 13 N 1.31514 * 119.99899 * 350.27590 * 12 11 10 14 14 Si 1.86797 * 120.00368 * 170.26983 * 12 11 10 15 15 H 1.48510 * 109.46939 * 60.00084 * 14 12 11 16 16 H 1.48497 * 109.47214 * 300.00370 * 14 12 11 17 17 H 1.48495 * 109.47502 * 180.02562 * 14 12 11 18 18 C 1.51273 * 118.30232 * 51.65687 * 11 10 9 19 19 C 1.52967 * 109.41442 * 204.99646 * 7 6 5 20 20 C 1.39287 * 119.81901 * 0.25615 * 5 4 3 21 21 N 1.31949 * 119.89225 * 359.47793 * 20 5 4 22 22 H 1.08996 * 109.47238 * 89.99767 * 1 2 3 23 23 H 1.08999 * 109.46803 * 210.00384 * 1 2 3 24 24 H 1.08999 * 109.47212 * 330.00054 * 1 2 3 25 25 H 1.07997 * 119.94686 * 0.02562 * 3 2 1 26 26 H 0.96999 * 119.99934 * 359.97438 * 6 5 4 27 27 H 1.09004 * 109.48211 * 303.68910 * 9 7 6 28 28 H 1.09004 * 109.48454 * 63.70972 * 9 7 6 29 29 H 1.08995 * 109.69178 * 185.52251 * 10 9 7 30 30 H 1.09007 * 109.78224 * 64.81055 * 10 9 7 31 31 H 0.97003 * 119.99773 * 354.32568 * 13 12 11 32 32 H 1.09004 * 109.62364 * 68.10658 * 18 11 10 33 33 H 1.08995 * 109.62818 * 188.49413 * 18 11 10 34 34 H 1.09004 * 109.47594 * 56.31713 * 19 7 6 35 35 H 1.08995 * 109.48415 * 296.27652 * 19 7 6 36 36 H 1.08006 * 120.05495 * 179.72282 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1980 0.0000 4 7 3.5183 1.2026 0.0005 5 6 4.1838 0.0548 0.0015 6 7 5.5739 0.0552 0.0015 7 6 6.3067 -1.2132 0.0021 8 1 5.7596 -1.9463 0.5950 9 6 6.4446 -1.7215 -1.4339 10 6 7.1283 -3.0976 -1.4230 11 6 8.4391 -2.9710 -0.6788 12 6 9.6159 -3.4220 -1.2378 13 7 9.5880 -4.1387 -2.3402 14 14 11.2501 -3.0150 -0.4297 15 1 11.2724 -3.5684 0.9482 16 1 11.4212 -1.5410 -0.3739 17 1 12.3560 -3.6115 -1.2211 18 6 8.4249 -2.3428 0.6973 19 6 7.6933 -0.9991 0.6116 20 6 3.4858 -1.1505 -0.0033 21 7 2.1663 -1.1464 0.0015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6537 2.1319 0.0004 26 1 6.0586 0.8954 0.0004 27 1 5.4560 -1.8116 -1.8842 28 1 7.0446 -1.0189 -2.0123 29 1 7.3181 -3.4216 -2.4462 30 1 6.4895 -3.8229 -0.9188 31 1 8.7384 -4.4197 -2.7145 32 1 7.9039 -2.9994 1.3941 33 1 9.4480 -2.1847 1.0382 34 1 7.5896 -0.5773 1.6114 35 1 8.2640 -0.3137 -0.0149 36 1 4.0237 -2.0871 -0.0070 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:18 Heat of formation + Delta-G solvation = 27.315672 kcal Electronic energy + Delta-G solvation = -17733.596094 eV Core-core repulsion = 15023.674811 eV Total energy + Delta-G solvation = -2709.921283 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88287 -37.89539 -35.14876 -33.74094 -32.35507 -31.16485 -29.83901 -27.60270 -25.95874 -24.57713 -22.47246 -22.06391 -21.12514 -19.75476 -17.74455 -17.09661 -16.51832 -15.71476 -15.08487 -15.00670 -14.30217 -13.95586 -13.77872 -13.33627 -12.94951 -12.53344 -12.42502 -12.35983 -12.02117 -11.74986 -11.31075 -11.25826 -11.04985 -10.78301 -10.57568 -10.25999 -10.16882 -10.02585 -9.68401 -9.30160 -8.90493 -8.60398 -8.38273 -7.50185 -6.51716 -4.11471 1.13158 1.46826 3.25686 3.35934 3.37203 3.56738 3.94091 4.40095 4.41673 4.59562 4.70595 5.07918 5.14932 5.23927 5.39213 5.54162 5.57775 5.65068 5.71730 5.89083 5.93854 6.27310 6.31442 6.42932 6.52036 6.60836 6.67977 6.76655 6.89620 7.08982 7.21194 7.23489 7.46261 7.67414 7.76742 7.94634 8.17834 8.24099 8.76864 9.50942 10.85422 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.049942 B = 0.004981 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.514454 B = 5620.395317 C = 5919.309821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.014 4.014 3 C 0.105 3.895 4 N -0.513 5.513 5 C 0.360 3.640 6 N -0.705 5.705 7 C 0.161 3.839 8 H 0.073 0.927 9 C -0.118 4.118 10 C 0.005 3.995 11 C -0.574 4.574 12 C 0.038 3.962 13 N -0.901 5.901 14 Si 1.058 2.942 15 H -0.285 1.285 16 H -0.285 1.285 17 H -0.287 1.287 18 C -0.001 4.001 19 C -0.114 4.114 20 C -0.005 4.005 21 N -0.403 5.403 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.162 0.838 26 H 0.401 0.599 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.008 0.992 31 H 0.273 0.727 32 H 0.017 0.983 33 H 0.030 0.970 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 8.612 5.032 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 C -0.057 4.057 4 N -0.236 5.236 5 C 0.120 3.880 6 N -0.334 5.334 7 C 0.057 3.943 8 H 0.091 0.909 9 C -0.158 4.158 10 C -0.033 4.033 11 C -0.592 4.592 12 C -0.168 4.168 13 N -0.536 5.536 14 Si 0.887 3.113 15 H -0.212 1.212 16 H -0.211 1.211 17 H -0.213 1.213 18 C -0.039 4.039 19 C -0.153 4.153 20 C -0.175 4.175 21 N -0.118 5.118 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.179 0.821 26 H 0.236 0.764 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.900 8.267 4.840 13.776 hybrid contribution -1.414 0.612 0.107 1.544 sum -11.314 8.878 4.946 15.209 Atomic orbital electron populations 1.20435 0.88471 1.02912 1.02476 1.21778 0.97945 0.89651 1.06168 1.23181 0.89352 0.98804 0.94324 1.67980 1.09062 1.27943 1.18617 1.19482 0.87084 0.90568 0.90892 1.45168 1.00685 1.10307 1.77236 1.21149 0.92515 0.82599 0.98007 0.90909 1.22133 0.98459 1.00812 0.94366 1.19471 0.95078 0.90901 0.97827 1.20991 0.94016 1.42516 1.01710 1.25746 1.02133 0.93458 0.95440 1.70802 1.30216 1.32520 1.20056 0.83678 0.75784 0.76484 0.75394 1.21200 1.21122 1.21271 1.19518 0.95278 0.91510 0.97610 1.21895 0.94193 1.01355 0.97849 1.23196 0.90270 0.98096 1.05910 1.68046 1.08021 1.29345 1.06369 0.91178 0.90975 0.91155 0.82131 0.76362 0.94840 0.92660 0.94347 0.97382 0.91523 0.96512 0.95129 0.94170 0.92269 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.19 36.01 0.37 -0.42 16 2 C -0.01 -0.19 6.78 -82.42 -0.56 -0.75 16 3 C 0.10 1.37 10.87 -17.40 -0.19 1.18 16 4 N -0.51 -8.05 10.53 -12.24 -0.13 -8.18 16 5 C 0.36 5.93 7.65 -154.72 -1.18 4.75 16 6 N -0.70 -11.39 5.24 -53.86 -0.28 -11.67 16 7 C 0.16 2.87 2.04 -67.97 -0.14 2.73 16 8 H 0.07 1.31 6.49 -51.93 -0.34 0.97 16 9 C -0.12 -2.38 5.42 -26.41 -0.14 -2.53 16 10 C 0.01 0.13 5.81 -27.26 -0.16 -0.03 16 11 C -0.57 -14.35 5.48 -98.92 -0.54 -14.89 16 12 C 0.04 1.02 5.45 -17.82 -0.10 0.92 16 13 N -0.90 -25.87 13.57 55.43 0.75 -25.12 16 14 Si 1.06 23.94 27.20 -169.99 -4.62 19.32 16 15 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 18 C 0.00 -0.02 5.65 -27.48 -0.16 -0.17 16 19 C -0.11 -2.13 5.40 -26.63 -0.14 -2.27 16 20 C 0.00 -0.08 9.95 -17.11 -0.17 -0.25 16 21 N -0.40 -6.46 10.41 -9.11 -0.09 -6.56 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.40 6.05 8.73 -40.82 -0.36 5.70 16 27 H 0.03 0.64 7.66 -51.93 -0.40 0.24 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.04 0.96 6.18 -51.93 -0.32 0.64 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.27 7.78 6.65 -40.82 -0.27 7.50 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.03 0.65 5.16 -51.93 -0.27 0.38 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.17 2.72 6.12 -52.48 -0.32 2.40 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -28.50 289.07 -8.00 -36.50 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.87 Total: 3.08 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -3.11 Total: -11.73 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.25 Total: -51.52 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.62 Total: 19.32 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.50 -8.00 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.816 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds