Wall clock time and date at job start Mon Mar 30 2020 18:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38206 * 119.90420 * 2 1 4 4 N 1.32220 * 120.10307 * 179.97438 * 3 2 1 5 5 C 1.32679 * 119.90768 * 359.97438 * 4 3 2 6 6 N 1.39007 * 120.09020 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00105 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.35778 * 324.82006 * 7 6 5 9 9 C 1.52957 * 109.41809 * 84.64552 * 7 6 5 10 10 C 1.53662 * 109.32881 * 183.83377 * 9 7 6 11 11 C 1.51263 * 108.30946 * 305.13690 * 10 9 7 12 12 C 1.37874 * 120.85227 * 231.37817 * 11 10 9 13 13 N 1.31514 * 119.99899 * 350.27590 * 12 11 10 14 14 Si 1.86797 * 120.00368 * 170.26983 * 12 11 10 15 15 H 1.48510 * 109.46939 * 60.00084 * 14 12 11 16 16 H 1.48497 * 109.47214 * 300.00370 * 14 12 11 17 17 H 1.48495 * 109.47502 * 180.02562 * 14 12 11 18 18 C 1.51273 * 118.30232 * 51.65687 * 11 10 9 19 19 C 1.52967 * 109.41442 * 204.99646 * 7 6 5 20 20 C 1.39287 * 119.81901 * 0.25615 * 5 4 3 21 21 N 1.31949 * 119.89225 * 359.47793 * 20 5 4 22 22 H 1.08996 * 109.47238 * 89.99767 * 1 2 3 23 23 H 1.08999 * 109.46803 * 210.00384 * 1 2 3 24 24 H 1.08999 * 109.47212 * 330.00054 * 1 2 3 25 25 H 1.07997 * 119.94686 * 0.02562 * 3 2 1 26 26 H 0.96999 * 119.99934 * 359.97438 * 6 5 4 27 27 H 1.09004 * 109.48211 * 303.68910 * 9 7 6 28 28 H 1.09004 * 109.48454 * 63.70972 * 9 7 6 29 29 H 1.08995 * 109.69178 * 185.52251 * 10 9 7 30 30 H 1.09007 * 109.78224 * 64.81055 * 10 9 7 31 31 H 0.97003 * 119.99773 * 354.32568 * 13 12 11 32 32 H 1.09004 * 109.62364 * 68.10658 * 18 11 10 33 33 H 1.08995 * 109.62818 * 188.49413 * 18 11 10 34 34 H 1.09004 * 109.47594 * 56.31713 * 19 7 6 35 35 H 1.08995 * 109.48415 * 296.27652 * 19 7 6 36 36 H 1.08006 * 120.05495 * 179.72282 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1980 0.0000 4 7 3.5183 1.2026 0.0005 5 6 4.1838 0.0548 0.0015 6 7 5.5739 0.0552 0.0015 7 6 6.3067 -1.2132 0.0021 8 1 5.7596 -1.9463 0.5950 9 6 6.4446 -1.7215 -1.4339 10 6 7.1283 -3.0976 -1.4230 11 6 8.4391 -2.9710 -0.6788 12 6 9.6159 -3.4220 -1.2378 13 7 9.5880 -4.1387 -2.3402 14 14 11.2501 -3.0150 -0.4297 15 1 11.2724 -3.5684 0.9482 16 1 11.4212 -1.5410 -0.3739 17 1 12.3560 -3.6115 -1.2211 18 6 8.4249 -2.3428 0.6973 19 6 7.6933 -0.9991 0.6116 20 6 3.4858 -1.1505 -0.0033 21 7 2.1663 -1.1464 0.0015 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6537 2.1319 0.0004 26 1 6.0586 0.8954 0.0004 27 1 5.4560 -1.8116 -1.8842 28 1 7.0446 -1.0189 -2.0123 29 1 7.3181 -3.4216 -2.4462 30 1 6.4895 -3.8229 -0.9188 31 1 8.7384 -4.4197 -2.7145 32 1 7.9039 -2.9994 1.3941 33 1 9.4480 -2.1847 1.0382 34 1 7.5896 -0.5773 1.6114 35 1 8.2640 -0.3137 -0.0149 36 1 4.0237 -2.0871 -0.0070 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:17 Heat of formation + Delta-G solvation = 9.308074 kcal Electronic energy + Delta-G solvation = -17734.376962 eV Core-core repulsion = 15023.674811 eV Total energy + Delta-G solvation = -2710.702151 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.138 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.03473 -39.41232 -36.59534 -35.08059 -33.81184 -32.46619 -31.56639 -29.06721 -27.21734 -25.77630 -24.04132 -23.52877 -22.67000 -21.37000 -19.07011 -18.44607 -18.16412 -16.85274 -16.63015 -16.16316 -15.70262 -15.38936 -15.30434 -14.85336 -14.22949 -14.10442 -13.56424 -13.50291 -13.43303 -13.11653 -12.93759 -12.50452 -12.47624 -12.31234 -12.10832 -11.96339 -11.91059 -11.53378 -11.37182 -10.91185 -10.53093 -10.28941 -10.04228 -8.72588 -8.58226 -6.16732 0.01175 0.31128 1.53761 1.58872 1.77968 2.00613 2.57298 2.80921 3.14498 3.35871 3.53510 3.56353 3.88195 4.06427 4.11510 4.26039 4.32887 4.55886 4.59790 4.80881 4.86598 4.87267 4.92816 4.93637 4.96568 5.11365 5.15708 5.18133 5.25336 5.47012 5.50072 5.68165 5.80971 6.01829 6.25119 6.46792 6.60624 6.73035 7.01854 7.53170 8.77982 Molecular weight = 247.14amu Principal moments of inertia in cm(-1) A = 0.049942 B = 0.004981 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.514454 B = 5620.395317 C = 5919.309821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.012 4.012 3 C 0.108 3.892 4 N -0.522 5.522 5 C 0.346 3.654 6 N -0.702 5.702 7 C 0.176 3.824 8 H 0.072 0.928 9 C -0.105 4.105 10 C 0.001 3.999 11 C -0.576 4.576 12 C -0.016 4.016 13 N -0.943 5.943 14 Si 1.094 2.906 15 H -0.265 1.265 16 H -0.264 1.264 17 H -0.299 1.299 18 C -0.007 4.007 19 C -0.107 4.107 20 C -0.027 4.027 21 N -0.426 5.426 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.103 0.897 25 H 0.205 0.795 26 H 0.407 0.593 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.010 0.990 30 H 0.004 0.996 31 H 0.258 0.742 32 H 0.020 0.980 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 11.050 6.734 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.154 4.154 3 C -0.054 4.054 4 N -0.245 5.245 5 C 0.107 3.893 6 N -0.333 5.333 7 C 0.071 3.929 8 H 0.090 0.910 9 C -0.144 4.144 10 C -0.038 4.038 11 C -0.595 4.595 12 C -0.215 4.215 13 N -0.580 5.580 14 Si 0.917 3.083 15 H -0.190 1.190 16 H -0.189 1.189 17 H -0.226 1.226 18 C -0.045 4.045 19 C -0.146 4.146 20 C -0.194 4.194 21 N -0.141 5.141 22 H 0.101 0.899 23 H 0.087 0.913 24 H 0.121 0.879 25 H 0.222 0.778 26 H 0.244 0.756 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.445 10.715 6.565 16.997 hybrid contribution -1.188 -0.112 -0.429 1.268 sum -12.633 10.603 6.136 17.598 Atomic orbital electron populations 1.20586 0.85392 1.04415 1.03717 1.22549 0.99952 0.89067 1.03846 1.23933 0.88570 1.00499 0.92352 1.68027 1.10404 1.27521 1.18579 1.19473 0.87029 0.90892 0.91898 1.44801 1.00726 1.09603 1.78155 1.20784 0.92651 0.83534 0.95918 0.90952 1.21920 0.97885 0.98299 0.96336 1.19471 0.95314 0.92880 0.96086 1.21569 0.94017 1.40808 1.03146 1.26991 1.05700 0.93293 0.95501 1.70911 1.29335 1.35545 1.22244 0.83224 0.72123 0.77528 0.75389 1.19019 1.18911 1.22606 1.19561 0.96437 0.93101 0.95427 1.21752 0.93829 0.99411 0.99577 1.23085 0.90818 0.97953 1.07582 1.68066 1.07889 1.31004 1.07158 0.89909 0.91307 0.87876 0.77818 0.75636 0.94345 0.93890 0.97134 0.97754 0.93078 0.96125 0.94345 0.91261 0.92384 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.19 71.24 0.73 -0.52 16 2 C -0.01 -0.29 6.78 42.49 0.29 0.00 16 3 C 0.11 2.45 10.87 84.63 0.92 3.37 16 4 N -0.52 -15.09 10.53 -192.64 -2.03 -17.11 16 5 C 0.35 10.90 7.65 133.02 1.02 11.92 16 6 N -0.70 -21.66 5.24 -324.32 -1.70 -23.36 16 7 C 0.18 6.10 2.04 44.97 0.09 6.20 16 8 H 0.07 2.55 6.49 -2.38 -0.02 2.54 16 9 C -0.11 -4.27 5.42 30.80 0.17 -4.10 16 10 C 0.00 0.03 5.81 30.25 0.18 0.21 16 11 C -0.58 -29.08 5.48 -16.17 -0.09 -29.17 16 12 C -0.02 -0.89 5.45 84.65 0.46 -0.43 16 13 N -0.94 -56.30 13.57 21.45 0.29 -56.01 16 14 Si 1.09 47.95 27.20 68.60 1.87 49.82 16 15 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 16 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 17 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 18 C -0.01 -0.29 5.65 30.11 0.17 -0.12 16 19 C -0.11 -3.77 5.40 30.66 0.17 -3.60 16 20 C -0.03 -0.87 9.95 84.93 0.85 -0.02 16 21 N -0.43 -13.13 10.41 -182.74 -1.90 -15.03 16 22 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.10 0.89 8.08 -2.39 -0.02 0.87 16 25 H 0.21 2.69 8.06 -2.91 -0.02 2.67 16 26 H 0.41 11.51 8.73 -92.71 -0.81 10.70 16 27 H 0.04 1.50 7.66 -2.38 -0.02 1.48 16 28 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.01 0.54 6.18 -2.39 -0.01 0.53 16 30 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.26 15.62 6.65 -92.71 -0.62 15.00 16 32 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.04 1.55 5.16 -2.39 -0.01 1.53 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.16 5.20 6.12 -2.91 -0.02 5.18 16 Total: -1.00 -63.07 289.07 1.90 -61.17 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.44 Total: 16.79 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 4.94 Total: -16.26 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -5.34 Total: -111.52 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.87 Total: 49.82 kcal Total: -63.07 1.90 -61.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.479 kcal (2) G-P(sol) polarization free energy of solvation -63.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds