Wall clock time and date at job start Mon Mar 30 2020 18:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 N 1.46504 * 109.47542 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00130 * 272.57979 * 4 3 2 6 6 H 1.07997 * 119.99543 * 317.09168 * 5 4 3 7 7 C 1.38808 * 119.99765 * 137.09639 * 5 4 3 8 8 N 1.31615 * 120.00074 * 344.77812 * 7 5 4 9 9 Si 1.86803 * 119.99688 * 164.78629 * 7 5 4 10 10 H 1.48502 * 109.47244 * 89.99521 * 9 7 5 11 11 H 1.48499 * 109.47129 * 209.99486 * 9 7 5 12 12 H 1.48491 * 109.47026 * 329.99538 * 9 7 5 13 13 C 1.46505 * 119.99470 * 92.57564 * 4 3 2 14 14 C 1.50694 * 109.47143 * 90.00722 * 13 4 3 15 15 C 1.38263 * 119.99869 * 259.99632 * 14 13 4 16 16 C 1.38212 * 120.00099 * 179.71939 * 15 14 13 17 17 C 1.38260 * 120.00262 * 0.27711 * 16 15 14 18 18 C 1.50693 * 120.00509 * 179.97438 * 17 16 15 19 19 C 1.38220 * 119.99407 * 359.95610 * 17 16 15 20 20 C 1.38214 * 120.00420 * 80.18373 * 14 13 4 21 21 C 1.50698 * 120.00040 * 0.02562 * 20 14 13 22 22 H 1.08996 * 109.47333 * 60.00133 * 1 2 3 23 23 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46934 * 299.99577 * 1 2 3 25 25 H 1.09001 * 109.46934 * 240.00423 * 2 1 3 26 26 H 1.08994 * 109.47654 * 120.00288 * 2 1 3 27 27 H 1.09002 * 109.47533 * 60.00106 * 3 2 1 28 28 H 1.09006 * 109.47394 * 300.00082 * 3 2 1 29 29 H 0.97005 * 119.99919 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47312 * 330.00279 * 13 4 3 31 31 H 1.09005 * 109.46478 * 209.99853 * 13 4 3 32 32 H 1.07998 * 119.99905 * 359.97438 * 15 14 13 33 33 H 1.08002 * 120.00319 * 180.25442 * 16 15 14 34 34 H 1.09003 * 109.47042 * 90.00028 * 18 17 16 35 35 H 1.08998 * 109.47757 * 210.00460 * 18 17 16 36 36 H 1.09004 * 109.46991 * 330.00529 * 18 17 16 37 37 H 1.08003 * 119.99600 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47274 * 270.21130 * 21 20 14 39 39 H 1.08996 * 109.47021 * 30.21111 * 21 20 14 40 40 H 1.08997 * 109.47510 * 150.21108 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3890 1.1838 6 1 3.8672 1.9886 2.0219 7 6 5.2999 0.5643 1.3069 8 7 5.5217 -0.3779 0.4151 9 14 6.4782 0.7916 2.7384 10 1 6.0369 -0.0480 3.8810 11 1 7.8449 0.3847 2.3240 12 1 6.4896 2.2188 3.1483 13 6 4.2369 1.4998 -1.2685 14 6 4.4879 2.9387 -1.6390 15 6 3.6795 3.5639 -2.5703 16 6 3.9061 4.8853 -2.9060 17 6 4.9447 5.5805 -2.3147 18 6 5.1922 7.0211 -2.6810 19 6 5.7558 4.9541 -1.3872 20 6 5.5286 3.6325 -1.0509 21 6 6.4127 2.9497 -0.0394 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 6.2970 -0.9545 0.5014 30 1 3.6474 1.0207 -2.0502 31 1 5.1894 0.9806 -1.1618 32 1 2.8684 3.0208 -3.0325 33 1 3.2721 5.3749 -3.6304 34 1 4.6216 7.6685 -2.0150 35 1 6.2545 7.2440 -2.5821 36 1 4.8792 7.1931 -3.7109 37 1 6.5669 5.4972 -0.9250 38 1 5.9954 3.0854 0.9584 39 1 6.4708 1.8854 -0.2672 40 1 7.4115 3.3845 -0.0775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:09:00 Heat of formation + Delta-G solvation = 23.307930 kcal Electronic energy + Delta-G solvation = -18578.535497 eV Core-core repulsion = 15971.980769 eV Total energy + Delta-G solvation = -2606.554728 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.98558 -36.09481 -33.43004 -32.34418 -31.56393 -30.42101 -27.68325 -26.40293 -25.44016 -24.14035 -21.90686 -21.32303 -20.16583 -19.07700 -16.76227 -15.30115 -14.99312 -14.63324 -14.31209 -14.04838 -13.80150 -13.50928 -13.14185 -12.79632 -12.46740 -12.28450 -12.21679 -12.10937 -11.53675 -11.46614 -11.17629 -10.92673 -10.87562 -10.75920 -10.50691 -10.44097 -10.18798 -10.10846 -9.91891 -9.64751 -9.60346 -8.44816 -8.03921 -7.64235 -6.48861 -5.80249 -3.42254 2.07821 2.11378 3.31327 3.39650 3.41453 4.38260 4.49636 5.29778 5.33850 5.35733 5.58456 5.63268 5.73241 5.81287 5.82345 5.87519 5.92651 6.03496 6.19407 6.22917 6.26068 6.36204 6.42757 6.54475 6.59332 6.67618 6.72414 6.78051 6.81902 6.92124 7.13558 7.17022 7.18616 7.31990 7.35298 7.54074 7.72163 7.81089 7.86675 8.56249 9.19169 9.77931 10.42151 11.18993 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.009548 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.876679 B = 2931.894797 C = 4259.900448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.151 3.849 4 N -0.575 5.575 5 C -0.252 4.252 6 H 0.055 0.945 7 C 0.023 3.977 8 N -0.887 5.887 9 Si 0.883 3.117 10 H -0.286 1.286 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.177 3.823 14 C -0.080 4.080 15 C -0.119 4.119 16 C -0.136 4.136 17 C -0.110 4.110 18 C -0.105 4.105 19 C -0.131 4.131 20 C -0.052 4.052 21 C -0.119 4.119 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.255 0.745 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 7.332 -4.768 9.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.025 3.975 4 N -0.294 5.294 5 C -0.382 4.382 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.213 1.213 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.051 3.949 14 C -0.083 4.083 15 C -0.138 4.138 16 C -0.154 4.154 17 C -0.110 4.110 18 C -0.162 4.162 19 C -0.150 4.150 20 C -0.053 4.053 21 C -0.176 4.176 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.121 7.179 -4.761 8.872 hybrid contribution 0.576 0.093 0.758 0.957 sum -1.545 7.272 -4.004 8.443 Atomic orbital electron populations 1.21761 0.97991 1.00195 1.00575 1.22046 0.92748 1.00822 1.02115 1.20913 0.85312 0.93284 0.97970 1.43648 0.99197 1.84616 1.01977 1.18913 1.09615 1.18767 0.90936 0.92743 1.25260 1.00874 0.94723 0.96885 1.69938 1.28585 1.18203 1.36136 0.86693 0.80989 0.78247 0.82917 1.21323 1.21183 1.19953 1.19959 1.00091 0.87972 0.86871 1.21128 0.93179 1.00399 0.93627 1.20993 0.99491 0.94541 0.98815 1.20788 0.98368 0.94916 1.01374 1.19650 0.97045 0.95704 0.98617 1.20675 1.01418 0.93207 1.00877 1.20835 1.00261 0.94792 0.99068 1.19811 0.95981 0.93109 0.96383 1.21151 0.95454 1.02244 0.98709 0.93778 0.93967 0.93511 0.93076 0.91873 0.94393 0.95024 0.93442 0.95137 0.87908 0.87229 0.87509 0.92058 0.92282 0.92340 0.87337 0.89943 0.89003 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.15 0.37 -1.97 16 2 C -0.14 -2.74 6.25 -26.74 -0.17 -2.91 16 3 C 0.15 3.21 5.67 -4.04 -0.02 3.19 16 4 N -0.58 -13.84 2.37 -174.61 -0.41 -14.26 16 5 C -0.25 -6.54 7.42 -15.06 -0.11 -6.65 16 6 H 0.05 1.46 7.87 -52.49 -0.41 1.04 16 7 C 0.02 0.59 2.99 -17.43 -0.05 0.54 16 8 N -0.89 -23.95 11.27 55.49 0.63 -23.33 16 9 Si 0.88 20.64 27.61 -169.99 -4.69 15.95 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.18 4.08 4.99 -5.19 -0.03 4.05 16 14 C -0.08 -1.70 5.46 -104.62 -0.57 -2.27 16 15 C -0.12 -2.23 9.67 -39.58 -0.38 -2.61 16 16 C -0.14 -2.29 9.70 -39.58 -0.38 -2.67 16 17 C -0.11 -1.82 5.88 -104.62 -0.62 -2.44 16 18 C -0.10 -1.33 10.01 36.00 0.36 -0.97 16 19 C -0.13 -2.40 9.36 -39.58 -0.37 -2.77 16 20 C -0.05 -1.08 5.88 -104.63 -0.62 -1.70 16 21 C -0.12 -2.55 7.23 36.00 0.26 -2.29 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 28 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 29 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 31 H 0.10 2.63 4.14 -51.93 -0.22 2.41 16 32 H 0.11 1.88 8.04 -52.49 -0.42 1.45 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.08 1.88 5.68 -51.93 -0.29 1.59 16 39 H 0.09 2.16 4.35 -51.93 -0.23 1.93 16 40 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 314.66 15.07 4.74 4.74 Total: -1.00 -26.77 314.66 -8.67 -35.44 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.60 Total: 2.90 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -2.33 Total: -21.45 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.21 Total: -37.58 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.69 Total: 15.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.77 -8.67 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.746 kcal (2) G-P(sol) polarization free energy of solvation -26.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds