Wall clock time and date at job start Mon Mar 30 2020 18:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47204 * 2 1 4 4 N 1.46504 * 109.47542 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00130 * 272.57979 * 4 3 2 6 6 H 1.07997 * 119.99543 * 317.09168 * 5 4 3 7 7 C 1.38808 * 119.99765 * 137.09639 * 5 4 3 8 8 N 1.31615 * 120.00074 * 344.77812 * 7 5 4 9 9 Si 1.86803 * 119.99688 * 164.78629 * 7 5 4 10 10 H 1.48502 * 109.47244 * 89.99521 * 9 7 5 11 11 H 1.48499 * 109.47129 * 209.99486 * 9 7 5 12 12 H 1.48491 * 109.47026 * 329.99538 * 9 7 5 13 13 C 1.46505 * 119.99470 * 92.57564 * 4 3 2 14 14 C 1.50694 * 109.47143 * 90.00722 * 13 4 3 15 15 C 1.38263 * 119.99869 * 259.99632 * 14 13 4 16 16 C 1.38212 * 120.00099 * 179.71939 * 15 14 13 17 17 C 1.38260 * 120.00262 * 0.27711 * 16 15 14 18 18 C 1.50693 * 120.00509 * 179.97438 * 17 16 15 19 19 C 1.38220 * 119.99407 * 359.95610 * 17 16 15 20 20 C 1.38214 * 120.00420 * 80.18373 * 14 13 4 21 21 C 1.50698 * 120.00040 * 0.02562 * 20 14 13 22 22 H 1.08996 * 109.47333 * 60.00133 * 1 2 3 23 23 H 1.09001 * 109.46985 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46934 * 299.99577 * 1 2 3 25 25 H 1.09001 * 109.46934 * 240.00423 * 2 1 3 26 26 H 1.08994 * 109.47654 * 120.00288 * 2 1 3 27 27 H 1.09002 * 109.47533 * 60.00106 * 3 2 1 28 28 H 1.09006 * 109.47394 * 300.00082 * 3 2 1 29 29 H 0.97005 * 119.99919 * 180.02562 * 8 7 5 30 30 H 1.08999 * 109.47312 * 330.00279 * 13 4 3 31 31 H 1.09005 * 109.46478 * 209.99853 * 13 4 3 32 32 H 1.07998 * 119.99905 * 359.97438 * 15 14 13 33 33 H 1.08002 * 120.00319 * 180.25442 * 16 15 14 34 34 H 1.09003 * 109.47042 * 90.00028 * 18 17 16 35 35 H 1.08998 * 109.47757 * 210.00460 * 18 17 16 36 36 H 1.09004 * 109.46991 * 330.00529 * 18 17 16 37 37 H 1.08003 * 119.99600 * 180.02562 * 19 17 16 38 38 H 1.09001 * 109.47274 * 270.21130 * 21 20 14 39 39 H 1.08996 * 109.47021 * 30.21111 * 21 20 14 40 40 H 1.08997 * 109.47510 * 150.21108 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3890 1.1838 6 1 3.8672 1.9886 2.0219 7 6 5.2999 0.5643 1.3069 8 7 5.5217 -0.3779 0.4151 9 14 6.4782 0.7916 2.7384 10 1 6.0369 -0.0480 3.8810 11 1 7.8449 0.3847 2.3240 12 1 6.4896 2.2188 3.1483 13 6 4.2369 1.4998 -1.2685 14 6 4.4879 2.9387 -1.6390 15 6 3.6795 3.5639 -2.5703 16 6 3.9061 4.8853 -2.9060 17 6 4.9447 5.5805 -2.3147 18 6 5.1922 7.0211 -2.6810 19 6 5.7558 4.9541 -1.3872 20 6 5.5286 3.6325 -1.0509 21 6 6.4127 2.9497 -0.0394 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8932 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 6.2970 -0.9545 0.5014 30 1 3.6474 1.0207 -2.0502 31 1 5.1894 0.9806 -1.1618 32 1 2.8684 3.0208 -3.0325 33 1 3.2721 5.3749 -3.6304 34 1 4.6216 7.6685 -2.0150 35 1 6.2545 7.2440 -2.5821 36 1 4.8792 7.1931 -3.7109 37 1 6.5669 5.4972 -0.9250 38 1 5.9954 3.0854 0.9584 39 1 6.4708 1.8854 -0.2672 40 1 7.4115 3.3845 -0.0775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:08:59 Heat of formation + Delta-G solvation = 11.427404 kcal Electronic energy + Delta-G solvation = -18579.050676 eV Core-core repulsion = 15971.980769 eV Total energy + Delta-G solvation = -2607.069907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 247.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45659 -37.81947 -34.97347 -34.01858 -33.09568 -32.09100 -29.12610 -27.98776 -27.15268 -25.68924 -23.56683 -22.79856 -21.79761 -20.60986 -18.66012 -17.00420 -16.48075 -16.35899 -15.96687 -15.54985 -15.42290 -15.08417 -14.47589 -14.32348 -13.92103 -13.82986 -13.71452 -13.49781 -13.15537 -12.83581 -12.81489 -12.53020 -12.50852 -12.43082 -12.23966 -12.00643 -11.84769 -11.74150 -11.61888 -11.33853 -11.30268 -10.43634 -9.47216 -9.10635 -8.43134 -7.77753 -5.43993 0.65156 0.67310 1.41052 1.45706 1.51642 2.49424 2.98796 3.31495 3.89137 4.06412 4.13283 4.25034 4.29369 4.37729 4.48797 4.54336 4.62917 4.70959 4.81401 4.84046 4.90286 4.93771 4.98099 4.98244 5.03674 5.12331 5.20217 5.23996 5.27752 5.46486 5.48830 5.57859 5.63793 5.68571 5.76205 5.82721 5.85516 6.15103 6.36991 6.56528 7.23363 7.87822 8.46661 9.17937 Molecular weight = 247.16amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.009548 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.876679 B = 2931.894797 C = 4259.900448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.150 3.850 4 N -0.589 5.589 5 C -0.255 4.255 6 H 0.041 0.959 7 C -0.005 4.005 8 N -0.911 5.911 9 Si 0.926 3.074 10 H -0.290 1.290 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.185 3.815 14 C -0.106 4.106 15 C -0.124 4.124 16 C -0.133 4.133 17 C -0.104 4.104 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.078 4.078 21 C -0.110 4.110 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.047 0.953 29 H 0.251 0.749 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 9.726 -5.827 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.024 3.976 4 N -0.309 5.309 5 C -0.386 4.386 6 H 0.059 0.941 7 C -0.203 4.203 8 N -0.555 5.555 9 Si 0.754 3.246 10 H -0.217 1.217 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.060 3.940 14 C -0.108 4.108 15 C -0.143 4.143 16 C -0.151 4.151 17 C -0.104 4.104 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.079 4.079 21 C -0.166 4.166 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.932 9.589 -5.826 11.597 hybrid contribution 0.797 -0.571 1.018 1.414 sum -2.134 9.018 -4.808 10.440 Atomic orbital electron populations 1.21659 0.94319 1.01586 1.01884 1.21882 0.95900 0.99273 0.99694 1.20996 0.83978 0.94142 0.98461 1.43826 1.00321 1.84992 1.01746 1.18910 1.10070 1.18238 0.91359 0.94098 1.25626 1.01752 0.94488 0.98424 1.70046 1.28819 1.19070 1.37539 0.86006 0.79521 0.78335 0.80743 1.21659 1.21165 1.19193 1.19720 0.98433 0.89548 0.86336 1.20931 0.94878 0.99267 0.95752 1.21160 0.99318 0.95670 0.98173 1.21179 0.98518 0.94021 1.01351 1.20156 0.95738 0.97670 0.96884 1.20744 1.02604 0.90259 1.02337 1.21072 1.01171 0.93828 0.99523 1.19882 0.96385 0.94524 0.97062 1.20955 0.96751 1.00948 0.97962 0.91998 0.92585 0.92613 0.94653 0.95088 0.94701 0.93471 0.93909 0.95483 0.90774 0.86102 0.84105 0.90767 0.91103 0.90306 0.85584 0.92010 0.91643 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.13 -5.14 6.25 30.59 0.19 -4.95 16 3 C 0.15 6.40 5.67 86.38 0.49 6.89 16 4 N -0.59 -29.14 2.37 -706.33 -1.68 -30.82 16 5 C -0.26 -13.67 7.42 84.03 0.62 -13.05 16 6 H 0.04 2.27 7.87 -2.91 -0.02 2.25 16 7 C 0.00 -0.26 2.99 84.86 0.25 -0.01 16 8 N -0.91 -51.26 11.27 21.65 0.24 -51.02 16 9 Si 0.93 43.41 27.61 68.60 1.89 45.30 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.19 8.83 4.99 85.63 0.43 9.25 16 14 C -0.11 -4.47 5.46 -19.87 -0.11 -4.58 16 15 C -0.12 -4.44 9.67 22.27 0.22 -4.22 16 16 C -0.13 -4.01 9.70 22.27 0.22 -3.79 16 17 C -0.10 -3.10 5.88 -19.87 -0.12 -3.21 16 18 C -0.10 -2.12 10.01 71.23 0.71 -1.41 16 19 C -0.14 -4.76 9.36 22.27 0.21 -4.55 16 20 C -0.08 -3.22 5.88 -19.87 -0.12 -3.34 16 21 C -0.11 -4.77 7.23 71.24 0.51 -4.26 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.03 1.49 8.06 -2.39 -0.02 1.47 16 28 H 0.05 1.84 8.05 -2.38 -0.02 1.83 16 29 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 30 H 0.03 1.25 7.93 -2.39 -0.02 1.23 16 31 H 0.07 3.99 4.14 -2.38 -0.01 3.98 16 32 H 0.12 3.93 8.04 -2.91 -0.02 3.90 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 36 H 0.08 1.34 8.09 -2.38 -0.02 1.32 16 37 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.06 2.88 5.68 -2.39 -0.01 2.87 16 39 H 0.06 3.19 4.35 -2.39 -0.01 3.18 16 40 H 0.05 2.07 8.09 -2.39 -0.02 2.05 16 Total: -1.00 -59.30 314.66 5.68 -53.62 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.99 Total: 17.52 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 4.22 Total: -34.61 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -1.43 Total: -81.84 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.89 Total: 45.30 kcal Total: -59.30 5.68 -53.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.051 kcal (2) G-P(sol) polarization free energy of solvation -59.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds