Wall clock time and date at job start Mon Mar 30 2020 18:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47149 * 180.02562 * 10 9 7 12 12 C 1.34233 * 117.00244 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99946 * 179.97438 * 12 11 10 15 15 H 1.08995 * 110.43661 * 300.69794 * 14 12 11 16 16 C 1.54883 * 110.48735 * 63.24571 * 14 12 11 17 17 C 1.55025 * 102.68724 * 156.51516 * 16 14 12 18 18 C 1.54273 * 104.27888 * 322.23309 * 17 16 14 19 19 F 1.39901 * 110.03362 * 264.23443 * 18 17 16 20 20 F 1.39899 * 110.07263 * 142.82310 * 18 17 16 21 21 C 1.53877 * 106.59655 * 23.51429 * 18 17 16 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 24 24 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 25 25 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 26 26 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 27 27 H 1.09004 * 110.75412 * 274.93435 * 16 14 12 28 28 H 1.09002 * 110.75599 * 38.29808 * 16 14 12 29 29 H 1.08998 * 110.52695 * 203.48904 * 17 16 14 30 30 H 1.08999 * 110.48092 * 80.95342 * 17 16 14 31 31 H 1.09001 * 110.03403 * 240.71668 * 21 18 17 32 32 H 1.09006 * 110.07137 * 119.30806 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5194 -4.9195 -0.0001 12 6 2.2505 -6.0453 0.0004 13 8 3.4570 -5.9820 0.0017 14 6 1.5663 -7.3880 0.0004 15 1 0.9286 -7.4902 0.8784 16 6 0.7387 -7.5747 -1.2954 17 6 0.6410 -9.1170 -1.4178 18 6 2.0198 -9.6242 -0.9471 19 9 2.8542 -9.8370 -2.0498 20 9 1.8728 -10.8113 -0.2216 21 6 2.6082 -8.5248 -0.0455 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.8720 -3.6043 -0.8894 26 1 2.8720 -3.6043 0.8906 27 1 -0.2509 -7.1300 -1.1892 28 1 1.2629 -7.1526 -2.1528 29 1 0.4606 -9.4077 -2.4527 30 1 -0.1479 -9.5017 -0.7714 31 1 3.5437 -8.1570 -0.4670 32 1 2.7790 -8.9153 0.9578 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796375708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:11:32 Heat of formation + Delta-G solvation = -235.086085 kcal Electronic energy + Delta-G solvation = -17913.613913 eV Core-core repulsion = 14508.073093 eV Total energy + Delta-G solvation = -3405.540820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.99311 -48.07266 -41.75773 -38.54808 -37.45359 -35.83446 -32.22764 -30.54323 -29.42009 -26.66727 -24.32802 -23.16077 -22.21067 -21.24896 -19.39032 -18.82200 -18.37465 -18.05178 -17.76617 -17.09205 -16.82445 -15.67765 -15.60333 -15.35858 -15.26628 -14.99983 -14.42939 -14.34837 -14.05201 -13.77508 -13.34059 -13.22025 -13.00189 -12.86604 -12.54816 -12.49675 -12.14424 -12.04765 -11.90285 -11.75574 -11.60357 -11.55585 -10.87690 -10.60177 -8.77154 -6.49830 1.02986 1.50239 1.57276 1.61924 1.82145 2.54284 2.70407 2.84918 2.94004 3.09513 3.32077 3.68695 3.80062 3.93043 4.05424 4.06529 4.08600 4.17603 4.27858 4.52376 4.64673 4.80451 4.87274 4.95456 5.00774 5.02657 5.19469 5.45468 5.81704 6.07000 6.45746 6.58943 7.31969 8.65061 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.060322 B = 0.003814 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.065529 B = 7340.164391 C = 7527.046272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.029 4.029 3 Si 1.121 2.879 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.628 4.628 8 H 0.055 0.945 9 C 0.015 3.985 10 C 0.096 3.904 11 O -0.358 6.358 12 C 0.461 3.539 13 O -0.542 6.542 14 C -0.078 4.078 15 H 0.154 0.846 16 C -0.110 4.110 17 C -0.147 4.147 18 C 0.279 3.721 19 F -0.210 7.210 20 F -0.201 7.201 21 C -0.156 4.156 22 H 0.259 0.741 23 H 0.006 0.994 24 H 0.006 0.994 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.116 0.884 28 H 0.070 0.930 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -19.279 -1.260 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.228 4.228 3 Si 0.941 3.059 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.666 4.666 8 H 0.073 0.927 9 C -0.022 4.022 10 C 0.022 3.978 11 O -0.274 6.274 12 C 0.306 3.694 13 O -0.432 6.432 14 C -0.097 4.097 15 H 0.172 0.828 16 C -0.147 4.147 17 C -0.185 4.185 18 C 0.243 3.757 19 F -0.191 7.191 20 F -0.182 7.182 21 C -0.194 4.194 22 H 0.068 0.932 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.135 0.865 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.459 -17.640 -1.271 17.692 hybrid contribution 0.585 -1.720 -0.006 1.817 sum 1.044 -19.360 -1.277 19.430 Atomic orbital electron populations 1.70909 1.07864 1.30185 1.47582 1.27463 0.96540 1.06654 0.92139 0.82891 0.74117 0.70773 0.78135 1.20545 1.19328 1.19354 1.22238 0.94909 0.92506 1.56927 0.92693 1.19145 0.95029 0.91824 0.96189 1.22989 0.94750 0.79033 1.00994 1.86496 1.42343 1.15581 1.83009 1.24199 0.86296 0.87690 0.71236 1.90631 1.17218 1.88394 1.46975 1.21932 0.97716 0.85314 1.04727 0.82826 1.22557 1.02044 0.95576 0.94543 1.23425 0.93563 0.95377 1.06127 1.21938 0.92191 0.81622 0.79984 1.93009 1.74734 1.95614 1.55717 1.93012 1.96306 1.50800 1.78108 1.23136 0.99858 0.93511 1.02886 0.93162 0.97566 0.97541 0.92350 0.92267 0.86526 0.91085 0.87050 0.85252 0.88901 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.65 21.45 0.29 -56.00 16 2 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 3 Si 1.12 49.02 29.90 68.60 2.05 51.07 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.63 -35.56 9.11 25.60 0.23 -35.32 16 8 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.02 0.79 4.66 29.85 0.14 0.93 16 10 C 0.10 4.20 5.40 71.98 0.39 4.59 16 11 O -0.36 -13.28 10.22 -51.44 -0.53 -13.81 16 12 C 0.46 14.54 7.25 71.24 0.52 15.05 16 13 O -0.54 -20.37 15.19 21.98 0.33 -20.04 16 14 C -0.08 -1.55 3.36 -10.47 -0.04 -1.59 16 15 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 16 C -0.11 -1.77 6.33 31.93 0.20 -1.57 16 17 C -0.15 -1.84 6.40 31.72 0.20 -1.64 16 18 C 0.28 5.10 2.58 31.32 0.08 5.18 16 19 F -0.21 -4.84 17.04 44.97 0.77 -4.07 16 20 F -0.20 -3.91 17.04 44.97 0.77 -3.15 16 21 C -0.16 -3.06 5.87 31.32 0.18 -2.88 16 22 H 0.26 15.79 7.22 -92.71 -0.67 15.12 16 23 H 0.01 0.33 8.01 -2.39 -0.02 0.31 16 24 H 0.01 0.34 8.01 -2.38 -0.02 0.32 16 25 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 26 H 0.06 2.60 8.13 -2.39 -0.02 2.58 16 27 H 0.12 1.55 8.14 -2.38 -0.02 1.54 16 28 H 0.07 1.35 8.05 -2.39 -0.02 1.34 16 29 H 0.11 1.19 8.11 -2.39 -0.02 1.17 16 30 H 0.13 1.02 8.12 -2.39 -0.02 1.00 16 31 H 0.09 2.29 6.75 -2.39 -0.02 2.27 16 32 H 0.12 1.93 8.02 -2.38 -0.02 1.92 16 Total: -1.00 -68.31 283.37 7.28 -61.03 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 1.22 Total: 3.40 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 2.37 Total: -18.44 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.29 Total: -56.00 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.19 Total: -33.85 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 1.53 Total: -7.22 kcal Atomic # 14 Polarization: 49.02 SS G_CDS: 2.05 Total: 51.07 kcal Total: -68.31 7.28 -61.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796375708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.054 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds