Wall clock time and date at job start Mon Mar 30 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86800 * 119.99582 * 2 1 4 4 H 1.48506 * 109.46816 * 239.99705 * 3 2 1 5 5 H 1.48494 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46986 * 120.00075 * 3 2 1 7 7 C 1.39018 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99440 * 180.02562 * 7 2 1 9 9 N 1.36835 * 120.00393 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00503 * 180.02562 * 9 7 2 11 11 O 1.21698 * 119.99624 * 359.97438 * 10 9 7 12 12 C 1.47039 * 120.00291 * 180.02562 * 10 9 7 13 13 C 1.38991 * 120.90858 * 359.97241 * 12 10 9 14 14 C 1.39875 * 119.42048 * 180.02562 * 13 12 10 15 15 C 1.35071 * 121.26873 * 359.97438 * 14 13 12 16 16 N 1.36275 * 121.59736 * 0.02562 * 15 14 13 17 17 C 1.36383 * 133.86619 * 179.97438 * 16 15 14 18 18 O 1.35694 * 126.33870 * 359.97438 * 17 16 15 19 19 N 1.31122 * 107.32257 * 179.97438 * 17 16 15 20 20 N 1.28699 * 110.30840 * 0.02562 * 19 17 16 21 21 C 1.31476 * 109.67145 * 359.97438 * 20 19 17 22 22 H 0.97003 * 120.00050 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99839 * 0.02562 * 9 7 2 24 24 H 1.08006 * 120.29186 * 0.02562 * 13 12 10 25 25 H 1.08001 * 119.36558 * 179.97438 * 14 13 12 26 26 H 1.07999 * 119.20222 * 180.28001 * 15 14 13 27 27 H 0.96705 * 114.00256 * 89.99853 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1015 1.6964 -1.2125 5 1 1.2827 2.7464 -0.0006 6 1 3.1015 1.6965 1.2125 7 6 2.0089 -1.2039 0.0005 8 1 3.0889 -1.2038 0.0010 9 7 1.3248 -2.3890 0.0016 10 6 1.9987 -3.5562 0.0026 11 8 3.2156 -3.5562 0.0022 12 6 1.2635 -4.8296 0.0032 13 6 -0.1263 -4.8517 0.0033 14 6 -0.7939 -6.0808 0.0044 15 6 -0.1141 -7.2480 0.0048 16 7 1.2483 -7.2807 0.0048 17 6 2.1695 -8.2864 0.0057 18 8 1.9066 -9.6176 0.0074 19 7 3.3562 -7.7288 0.0046 20 7 3.2472 -6.4464 0.0036 21 6 1.9762 -6.1103 0.0035 22 1 -0.4850 0.8401 -0.0004 23 1 0.3548 -2.3890 0.0016 24 1 -0.6858 -3.9279 0.0025 25 1 -1.8738 -6.0969 0.0048 26 1 -0.6634 -8.1778 0.0011 27 1 1.8300 -10.0046 -0.8756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254046708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:11 Heat of formation + Delta-G solvation = 47.175868 kcal Electronic energy + Delta-G solvation = -17144.054348 eV Core-core repulsion = 14097.902167 eV Total energy + Delta-G solvation = -3046.152180 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.20638 -38.65775 -37.63272 -37.39756 -34.22879 -33.31002 -31.49137 -30.75941 -28.70916 -25.66427 -24.21826 -23.10874 -22.47119 -20.38594 -18.87204 -18.22985 -17.80607 -16.97631 -16.61664 -15.78161 -15.14409 -14.90853 -14.65364 -14.05935 -13.49204 -13.47265 -12.69364 -12.36251 -12.25794 -11.97883 -11.80104 -11.45787 -11.27815 -10.63937 -10.61115 -10.46842 -10.15265 -9.73323 -9.35233 -8.54480 -8.26072 -7.83813 -6.79062 -4.00964 0.48031 1.20789 2.05373 2.74975 3.02820 3.12444 3.17039 3.25391 3.74837 3.92774 4.22427 4.28100 4.33364 4.73410 4.90993 5.03247 5.10317 5.42989 5.62827 5.70141 6.03436 6.17013 6.27916 6.39533 6.70598 7.22410 7.30670 7.76173 8.30922 8.76404 8.87254 9.19792 9.83991 10.36439 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.046107 B = 0.005546 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.130835 B = 5047.797333 C = 5642.522831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.022 3.978 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.275 4.275 8 H 0.114 0.886 9 N -0.532 5.532 10 C 0.459 3.541 11 O -0.568 6.568 12 C -0.036 4.036 13 C -0.107 4.107 14 C -0.115 4.115 15 C 0.035 3.965 16 N -0.399 5.399 17 C 0.294 3.706 18 O -0.431 6.431 19 N -0.249 5.249 20 N -0.237 5.237 21 C 0.234 3.766 22 H 0.281 0.719 23 H 0.394 0.606 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.162 0.838 27 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 -10.858 -1.698 13.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.405 4.405 8 H 0.132 0.868 9 N -0.166 5.166 10 C 0.248 3.752 11 O -0.452 6.452 12 C -0.044 4.044 13 C -0.133 4.133 14 C -0.136 4.136 15 C -0.087 4.087 16 N -0.091 5.091 17 C -0.005 4.005 18 O -0.229 6.229 19 N -0.100 5.100 20 N -0.083 5.083 21 C -0.018 4.018 22 H 0.091 0.909 23 H 0.229 0.771 24 H 0.169 0.831 25 H 0.172 0.828 26 H 0.180 0.820 27 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.456 -10.736 -1.088 12.092 hybrid contribution -1.934 0.283 -0.495 2.017 sum -7.390 -10.453 -1.583 12.899 Atomic orbital electron populations 1.69580 1.06299 1.29489 1.46106 1.25494 0.95805 1.00486 0.96547 0.85737 0.78854 0.79138 0.79681 1.19328 1.20599 1.19318 1.20001 0.94217 0.81869 1.44368 0.86780 1.41944 1.09537 1.04654 1.60449 1.17011 0.87696 0.82283 0.88247 1.90766 1.12212 1.86073 1.56184 1.20645 0.92073 0.90359 1.01328 1.21691 0.92545 0.98970 1.00133 1.20696 1.01037 0.90641 1.01240 1.21388 0.80304 1.01010 1.06016 1.43933 1.07356 1.09027 1.48798 1.21702 0.84204 0.82622 1.11955 1.84991 1.91785 1.12200 1.33916 1.74680 1.16979 1.02055 1.16298 1.75028 1.12370 1.02004 1.18929 1.22750 0.88547 0.86090 1.04390 0.90921 0.77129 0.83095 0.82830 0.82018 0.74573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.55 13.05 55.50 0.72 -20.83 15 2 C 0.02 0.53 5.50 -17.45 -0.10 0.44 15 3 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 15 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.27 -7.20 9.68 -15.03 -0.15 -7.35 15 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 15 9 N -0.53 -12.90 5.23 -12.08 -0.06 -12.96 15 10 C 0.46 11.30 7.72 -12.69 -0.10 11.20 15 11 O -0.57 -16.32 15.85 5.19 0.08 -16.24 15 12 C -0.04 -0.72 6.06 -102.70 -0.62 -1.34 15 13 C -0.11 -1.61 9.63 -38.69 -0.37 -1.98 15 14 C -0.11 -1.29 9.91 -40.10 -0.40 -1.68 15 15 C 0.04 0.42 10.94 -16.70 -0.18 0.23 15 16 N -0.40 -6.47 2.97 -62.49 -0.19 -6.66 15 17 C 0.29 4.82 9.41 -88.62 -0.83 3.98 15 18 O -0.43 -5.05 13.65 -18.78 -0.26 -5.31 15 19 N -0.25 -5.05 12.20 29.71 0.36 -4.69 15 20 N -0.24 -5.47 11.75 32.37 0.38 -5.09 15 21 C 0.23 4.84 7.75 -153.92 -1.19 3.64 15 22 H 0.28 6.48 8.31 -40.82 -0.34 6.14 15 23 H 0.39 8.70 5.99 -40.82 -0.24 8.46 15 24 H 0.15 2.07 6.48 -52.48 -0.34 1.73 15 25 H 0.15 1.07 8.06 -52.49 -0.42 0.65 15 26 H 0.16 1.24 8.06 -52.49 -0.42 0.82 15 27 H 0.40 2.36 9.06 45.56 0.41 2.77 15 LS Contribution 255.27 15.07 3.85 3.85 Total: -1.00 -33.96 255.27 -4.60 -38.56 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -0.53 Total: 7.80 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -3.94 Total: 7.15 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 1.22 Total: -50.23 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.17 Total: -21.55 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.96 -4.60 -38.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254046708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.734 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds