Wall clock time and date at job start Mon Mar 30 2020 18:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31385 * 1 3 3 Si 1.86800 * 119.99582 * 2 1 4 4 H 1.48506 * 109.46816 * 239.99705 * 3 2 1 5 5 H 1.48494 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46986 * 120.00075 * 3 2 1 7 7 C 1.39018 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99440 * 180.02562 * 7 2 1 9 9 N 1.36835 * 120.00393 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00503 * 180.02562 * 9 7 2 11 11 O 1.21698 * 119.99624 * 359.97438 * 10 9 7 12 12 C 1.47039 * 120.00291 * 180.02562 * 10 9 7 13 13 C 1.38991 * 120.90858 * 359.97241 * 12 10 9 14 14 C 1.39875 * 119.42048 * 180.02562 * 13 12 10 15 15 C 1.35071 * 121.26873 * 359.97438 * 14 13 12 16 16 N 1.36275 * 121.59736 * 0.02562 * 15 14 13 17 17 C 1.36383 * 133.86619 * 179.97438 * 16 15 14 18 18 O 1.35694 * 126.33870 * 359.97438 * 17 16 15 19 19 N 1.31122 * 107.32257 * 179.97438 * 17 16 15 20 20 N 1.28699 * 110.30840 * 0.02562 * 19 17 16 21 21 C 1.31476 * 109.67145 * 359.97438 * 20 19 17 22 22 H 0.97003 * 120.00050 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99839 * 0.02562 * 9 7 2 24 24 H 1.08006 * 120.29186 * 0.02562 * 13 12 10 25 25 H 1.08001 * 119.36558 * 179.97438 * 14 13 12 26 26 H 1.07999 * 119.20222 * 180.28001 * 15 14 13 27 27 H 0.96705 * 114.00256 * 89.99853 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2477 1.6178 0.0000 4 1 3.1015 1.6964 -1.2125 5 1 1.2827 2.7464 -0.0006 6 1 3.1015 1.6965 1.2125 7 6 2.0089 -1.2039 0.0005 8 1 3.0889 -1.2038 0.0010 9 7 1.3248 -2.3890 0.0016 10 6 1.9987 -3.5562 0.0026 11 8 3.2156 -3.5562 0.0022 12 6 1.2635 -4.8296 0.0032 13 6 -0.1263 -4.8517 0.0033 14 6 -0.7939 -6.0808 0.0044 15 6 -0.1141 -7.2480 0.0048 16 7 1.2483 -7.2807 0.0048 17 6 2.1695 -8.2864 0.0057 18 8 1.9066 -9.6176 0.0074 19 7 3.3562 -7.7288 0.0046 20 7 3.2472 -6.4464 0.0036 21 6 1.9762 -6.1103 0.0035 22 1 -0.4850 0.8401 -0.0004 23 1 0.3548 -2.3890 0.0016 24 1 -0.6858 -3.9279 0.0025 25 1 -1.8738 -6.0969 0.0048 26 1 -0.6634 -8.1778 0.0011 27 1 1.8300 -10.0046 -0.8756 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254046708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:11 Heat of formation + Delta-G solvation = 17.671260 kcal Electronic energy + Delta-G solvation = -17145.333763 eV Core-core repulsion = 14097.902167 eV Total energy + Delta-G solvation = -3047.431596 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.56135 -40.34585 -38.85795 -38.67796 -36.10613 -34.72983 -33.27881 -32.06035 -30.10018 -27.36138 -25.64886 -24.43159 -23.86558 -21.85351 -20.40378 -19.82926 -19.14640 -18.28747 -18.04723 -17.21138 -16.72921 -16.25974 -15.84535 -15.75062 -15.28863 -15.00069 -13.90962 -13.65574 -13.59430 -13.56561 -13.18319 -12.98836 -12.83105 -12.45216 -12.11268 -12.04264 -11.56106 -11.48614 -10.65783 -10.50591 -10.12250 -9.16697 -8.58475 -5.98932 -0.74177 -0.03106 0.78755 1.39385 1.43523 1.48815 1.53766 1.80313 2.25741 2.53198 2.58777 2.86631 3.09067 3.23302 3.40809 3.75944 3.84451 4.06358 4.43559 4.59704 4.78224 4.86935 4.99574 5.23145 5.34470 5.66180 5.89587 6.35985 6.49229 7.01861 7.36723 7.40470 8.01108 8.58000 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.046107 B = 0.005546 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.130835 B = 5047.797333 C = 5642.522831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.002 4.002 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.273 1.273 7 C -0.331 4.331 8 H 0.081 0.919 9 N -0.540 5.540 10 C 0.463 3.537 11 O -0.622 6.622 12 C -0.105 4.105 13 C -0.040 4.040 14 C -0.121 4.121 15 C 0.074 3.926 16 N -0.401 5.401 17 C 0.325 3.675 18 O -0.418 6.418 19 N -0.291 5.291 20 N -0.307 5.307 21 C 0.223 3.777 22 H 0.286 0.714 23 H 0.401 0.599 24 H 0.167 0.833 25 H 0.218 0.782 26 H 0.224 0.776 27 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.709 -13.693 -1.832 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.205 4.205 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.099 0.901 9 N -0.176 5.176 10 C 0.252 3.748 11 O -0.510 6.510 12 C -0.112 4.112 13 C -0.066 4.066 14 C -0.142 4.142 15 C -0.047 4.047 16 N -0.094 5.094 17 C 0.023 3.977 18 O -0.220 6.220 19 N -0.140 5.140 20 N -0.153 5.153 21 C -0.031 4.031 22 H 0.095 0.905 23 H 0.238 0.762 24 H 0.184 0.816 25 H 0.234 0.766 26 H 0.241 0.759 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -9.409 -13.626 -1.245 16.606 hybrid contribution -0.946 0.564 -0.461 1.194 sum -10.356 -13.062 -1.706 16.756 Atomic orbital electron populations 1.69595 1.06685 1.30212 1.47398 1.26075 0.96661 1.02291 0.95465 0.84956 0.77935 0.76259 0.79057 1.19710 1.18704 1.19776 1.19741 0.93164 0.83650 1.49533 0.90098 1.41719 1.09559 1.04083 1.62208 1.17775 0.87391 0.83888 0.85712 1.90698 1.15067 1.87458 1.57727 1.20191 0.93834 0.88212 1.08975 1.22238 0.90360 1.01917 0.92048 1.21378 1.03815 0.88181 1.00817 1.22714 0.78348 1.03986 0.99603 1.44153 1.08853 1.07444 1.48908 1.21656 0.83448 0.84033 1.08570 1.84984 1.91336 1.09150 1.36547 1.74507 1.19546 1.01567 1.18383 1.74904 1.14720 1.03472 1.22158 1.22708 0.88594 0.87465 1.04352 0.90471 0.76217 0.81567 0.76553 0.75930 0.70934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.08 13.05 21.68 0.28 -44.79 15 2 C 0.00 -0.13 5.50 84.95 0.47 0.34 15 3 Si 1.00 41.36 29.55 68.60 2.03 43.39 15 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 7 C -0.33 -18.64 9.68 84.10 0.81 -17.83 15 8 H 0.08 4.93 7.15 -2.91 -0.02 4.91 15 9 N -0.54 -27.65 5.23 -310.34 -1.62 -29.27 15 10 C 0.46 24.18 7.72 86.55 0.67 24.85 15 11 O -0.62 -38.82 15.85 -4.34 -0.07 -38.89 15 12 C -0.10 -4.21 6.06 -18.62 -0.11 -4.32 15 13 C -0.04 -1.05 9.63 22.85 0.22 -0.83 15 14 C -0.12 -1.84 9.91 21.94 0.22 -1.63 15 15 C 0.07 1.22 10.94 83.27 0.91 2.13 15 16 N -0.40 -11.52 2.97 -462.28 -1.37 -12.90 15 17 C 0.32 9.67 9.41 179.65 1.69 11.37 15 18 O -0.42 -7.74 13.65 -90.13 -1.23 -8.97 15 19 N -0.29 -11.87 12.20 -173.35 -2.12 -13.98 15 20 N -0.31 -14.76 11.75 -51.50 -0.61 -15.37 15 21 C 0.22 9.14 7.75 135.69 1.05 10.20 15 22 H 0.29 13.24 8.31 -92.71 -0.77 12.47 15 23 H 0.40 18.26 5.99 -92.71 -0.56 17.70 15 24 H 0.17 3.95 6.48 -2.91 -0.02 3.93 15 25 H 0.22 0.83 8.06 -2.91 -0.02 0.81 15 26 H 0.22 1.10 8.06 -2.91 -0.02 1.07 15 27 H 0.43 2.67 9.06 -74.05 -0.67 2.00 15 Total: -1.00 -85.50 255.27 1.26 -84.25 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.04 Total: 12.27 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 5.93 Total: 24.28 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -5.43 Total: -116.31 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -1.30 Total: -47.86 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -85.50 1.26 -84.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254046708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.917 kcal (2) G-P(sol) polarization free energy of solvation -85.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds