Wall clock time and date at job start Mon Mar 30 2020 18:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31490 * 1 3 3 Si 1.86800 * 119.99856 * 2 1 4 4 H 1.48501 * 109.47293 * 270.00007 * 3 2 1 5 5 H 1.48497 * 109.47217 * 29.99958 * 3 2 1 6 6 H 1.48499 * 109.47075 * 149.99824 * 3 2 1 7 7 C 1.38911 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00020 * 359.97438 * 7 2 1 9 9 N 1.36807 * 119.99964 * 180.02562 * 7 2 1 10 10 C 1.38390 * 119.99638 * 179.97438 * 9 7 2 11 11 C 1.39692 * 120.05491 * 359.97438 * 10 9 7 12 12 C 1.38291 * 118.02832 * 179.76945 * 11 10 9 13 13 C 1.40094 * 117.99832 * 0.48091 * 12 11 10 14 14 C 1.47837 * 120.09256 * 179.78005 * 13 12 11 15 15 O 1.21563 * 120.00030 * 359.72720 * 14 13 12 16 16 N 1.34777 * 119.99979 * 179.45173 * 14 13 12 17 17 C 1.46499 * 120.00195 * 180.27958 * 16 14 13 18 18 C 1.53002 * 117.49965 * 223.74669 * 17 16 14 19 19 C 1.52997 * 117.50127 * 155.08136 * 17 16 14 20 20 N 1.32837 * 119.81730 * 359.51143 * 13 12 11 21 21 N 1.28359 * 122.10366 * 0.24275 * 20 13 12 22 22 H 0.97005 * 120.00145 * 0.02562 * 1 2 3 23 23 H 0.96996 * 120.00082 * 359.97438 * 9 7 2 24 24 H 1.08001 * 120.99005 * 359.97438 * 11 10 9 25 25 H 1.08007 * 121.00431 * 180.26354 * 12 11 10 26 26 H 0.97000 * 119.99736 * 0.27230 * 16 14 13 27 27 H 1.09008 * 115.54804 * 9.41320 * 17 16 14 28 28 H 1.08999 * 117.49594 * 359.97438 * 18 17 16 29 29 H 1.09001 * 117.49884 * 145.01591 * 18 17 16 30 30 H 1.08992 * 117.49936 * 214.97505 * 19 17 16 31 31 H 1.08997 * 117.49764 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5464 1.4402 0.7001 7 6 2.0095 -1.2030 -0.0005 8 1 1.4695 -2.1384 -0.0005 9 7 3.3776 -1.2029 0.0000 10 6 4.0695 -2.4015 0.0000 11 6 3.3721 -3.6119 0.0000 12 6 4.1055 -4.7843 -0.0049 13 6 5.5030 -4.6860 0.0008 14 6 6.3322 -5.9099 0.0008 15 8 5.8015 -7.0036 0.0009 16 7 7.6764 -5.8131 -0.0049 17 6 8.4982 -7.0259 -0.0110 18 6 9.7102 -7.0629 0.9220 19 6 9.9108 -6.9192 -0.5888 20 7 6.0809 -3.4900 0.0008 21 7 5.3988 -2.4026 0.0003 22 1 -0.4850 0.8401 -0.0004 23 1 3.8625 -0.3629 0.0004 24 1 2.2923 -3.6315 0.0004 25 1 3.6156 -5.7469 -0.0094 26 1 8.0998 -4.9404 -0.0050 27 1 7.9579 -7.9590 -0.1715 28 1 9.8964 -6.1846 1.5401 29 1 9.9676 -8.0203 1.3751 30 1 10.3002 -7.7822 -1.1289 31 1 10.2287 -5.9468 -0.9647 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534978.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:13 Heat of formation + Delta-G solvation = 51.071922 kcal Electronic energy + Delta-G solvation = -16806.654332 eV Core-core repulsion = 13896.504192 eV Total energy + Delta-G solvation = -2910.150140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.17149 -39.00456 -36.92263 -36.15120 -32.92398 -32.45891 -32.07279 -29.88945 -25.80689 -23.80726 -23.25304 -22.48246 -21.58672 -20.49410 -19.02025 -17.49309 -17.00160 -16.66711 -16.00376 -14.95306 -14.82089 -14.54620 -14.25839 -13.76838 -13.65368 -13.22646 -12.80542 -12.63204 -12.31199 -11.94945 -11.69247 -11.34086 -11.15555 -11.00038 -10.81817 -10.58661 -10.44507 -9.58184 -9.40723 -9.39191 -8.80244 -8.61704 -7.76923 -6.96242 -4.24762 1.45909 1.82985 2.80792 2.84283 2.88609 3.20799 3.32099 3.65410 3.88569 4.08137 4.39077 4.73308 4.81487 4.90465 4.94274 4.94794 5.46250 5.51263 5.56576 5.73144 5.76271 5.89154 5.97039 5.99420 6.49488 6.65528 6.75957 6.93981 7.05951 7.42148 7.78447 8.04685 8.52695 8.64145 8.69687 9.66014 10.11370 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.052792 B = 0.004289 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.258611 B = 6526.836245 C = 6978.780234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.052 3.948 3 Si 0.885 3.115 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.310 4.310 8 H 0.128 0.872 9 N -0.515 5.515 10 C 0.293 3.707 11 C -0.194 4.194 12 C -0.029 4.029 13 C -0.126 4.126 14 C 0.601 3.399 15 O -0.557 6.557 16 N -0.696 5.696 17 C 0.085 3.915 18 C -0.197 4.197 19 C -0.193 4.193 20 N -0.159 5.159 21 N -0.340 5.340 22 H 0.287 0.713 23 H 0.390 0.610 24 H 0.145 0.855 25 H 0.139 0.861 26 H 0.410 0.590 27 H 0.136 0.864 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 -5.937 0.003 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.158 4.158 3 Si 0.709 3.291 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.440 4.440 8 H 0.145 0.855 9 N -0.120 5.120 10 C 0.047 3.953 11 C -0.227 4.227 12 C -0.056 4.056 13 C -0.278 4.278 14 C 0.389 3.611 15 O -0.433 6.433 16 N -0.346 5.346 17 C -0.022 4.022 18 C -0.236 4.236 19 C -0.231 4.231 20 N -0.013 5.013 21 N -0.205 5.205 22 H 0.098 0.902 23 H 0.226 0.774 24 H 0.163 0.837 25 H 0.157 0.843 26 H 0.247 0.753 27 H 0.154 0.846 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.954 -5.589 0.000 13.196 hybrid contribution -0.716 0.857 0.034 1.117 sum 11.238 -4.732 0.034 12.193 Atomic orbital electron populations 1.69626 1.05910 1.29388 1.42404 1.25148 0.95729 0.99112 0.95807 0.86513 0.80238 0.82361 0.79996 1.18604 1.19193 1.18442 1.19636 0.78545 0.97420 1.48435 0.85474 1.40989 1.06413 1.04216 1.60357 1.19669 0.90531 0.87264 0.97868 1.21518 1.01522 0.90708 1.08970 1.21724 0.92707 0.98975 0.92230 1.21372 0.92903 0.93060 1.20415 1.17595 0.81214 0.87720 0.74562 1.90700 1.72888 1.27964 1.51794 1.45198 1.05786 1.08569 1.75061 1.21543 0.86188 0.91015 1.03407 1.23435 1.03320 1.03705 0.93117 1.23377 0.99643 1.03720 0.96355 1.72499 1.31289 0.94691 1.02851 1.72838 1.03975 1.18834 1.24889 0.90242 0.77407 0.83726 0.84334 0.75344 0.84626 0.88457 0.88226 0.88106 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.92 13.96 55.50 0.77 -20.14 16 2 C 0.05 1.23 5.50 -17.45 -0.10 1.14 16 3 Si 0.88 17.36 27.74 -169.99 -4.71 12.64 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -4.90 6.52 56.52 0.37 -4.54 16 7 C -0.31 -7.33 10.03 -15.08 -0.15 -7.48 16 8 H 0.13 3.12 5.91 -52.48 -0.31 2.81 16 9 N -0.51 -11.35 5.22 -11.05 -0.06 -11.40 16 10 C 0.29 6.41 7.70 -154.95 -1.19 5.22 16 11 C -0.19 -3.97 9.39 -39.02 -0.37 -4.33 16 12 C -0.03 -0.56 9.71 -38.87 -0.38 -0.94 16 13 C -0.13 -2.48 6.83 -82.81 -0.57 -3.04 16 14 C 0.60 10.93 7.80 -12.33 -0.10 10.83 16 15 O -0.56 -11.19 15.95 5.31 0.08 -11.10 16 16 N -0.70 -10.25 5.56 -54.75 -0.30 -10.56 16 17 C 0.08 1.04 6.43 -67.93 -0.44 0.60 16 18 C -0.20 -1.89 10.46 -26.69 -0.28 -2.17 16 19 C -0.19 -1.78 10.46 -26.69 -0.28 -2.06 16 20 N -0.16 -3.22 10.73 33.33 0.36 -2.86 16 21 N -0.34 -7.39 11.55 31.22 0.36 -7.03 16 22 H 0.29 6.56 8.31 -40.82 -0.34 6.22 16 23 H 0.39 8.14 5.88 -40.82 -0.24 7.90 16 24 H 0.15 2.86 6.02 -52.49 -0.32 2.54 16 25 H 0.14 2.43 7.71 -52.48 -0.40 2.03 16 26 H 0.41 5.64 8.17 -40.82 -0.33 5.30 16 27 H 0.14 1.76 7.40 -51.92 -0.38 1.37 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 277.74 15.07 4.19 4.19 Total: -1.00 -26.62 277.74 -6.00 -32.62 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -2.85 Total: 15.89 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.84 Total: -2.24 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 1.13 Total: -51.99 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -4.71 Total: 12.64 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -26.62 -6.00 -32.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534978.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.694 kcal (2) G-P(sol) polarization free energy of solvation -26.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds