Wall clock time and date at job start Mon Mar 30 2020 18:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.49250 * 2 1 4 4 C 1.51515 * 110.55110 * 237.29765 * 2 1 3 5 5 O 1.21271 * 126.48793 * 61.22366 * 4 2 1 6 6 N 1.34453 * 107.01828 * 241.48681 * 4 2 1 7 7 C 1.38529 * 112.39607 * 359.61921 * 6 4 2 8 8 N 1.33516 * 131.63082 * 180.08321 * 7 6 4 9 9 C 1.31674 * 120.92086 * 180.28643 * 8 7 6 10 10 N 1.31734 * 122.41034 * 0.04692 * 9 8 7 11 11 C 1.33476 * 120.48475 * 359.97438 * 10 9 8 12 12 N 1.38576 * 120.69471 * 180.02562 * 11 10 9 13 13 C 1.46498 * 120.00426 * 95.79162 * 12 11 10 14 14 C 1.36939 * 120.00084 * 275.78203 * 12 11 10 15 15 H 1.08010 * 119.99738 * 352.29929 * 14 12 11 16 16 C 1.38842 * 120.00459 * 172.29746 * 14 12 11 17 17 N 1.31536 * 119.99628 * 5.38936 * 16 14 12 18 18 Si 1.86802 * 120.00166 * 185.39301 * 16 14 12 19 19 H 1.48491 * 109.47095 * 90.00017 * 18 16 14 20 20 H 1.48497 * 109.46914 * 209.99781 * 18 16 14 21 21 H 1.48497 * 109.47060 * 329.99535 * 18 16 14 22 22 C 1.38542 * 118.60006 * 359.97438 * 11 10 9 23 23 H 1.09001 * 109.46618 * 177.88622 * 1 2 3 24 24 H 1.08989 * 109.47134 * 297.88897 * 1 2 3 25 25 H 1.09002 * 109.46635 * 57.89313 * 1 2 3 26 26 H 0.96990 * 123.80513 * 179.73062 * 6 4 2 27 27 H 1.08001 * 118.79436 * 180.02562 * 9 8 7 28 28 H 1.09006 * 109.46935 * 3.62185 * 13 12 11 29 29 H 1.08996 * 109.47645 * 123.62472 * 13 12 11 30 30 H 1.08998 * 109.46988 * 243.62715 * 13 12 11 31 31 H 0.97002 * 120.00007 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9116 1.0210 0.0000 4 6 2.0619 -0.7665 -1.1938 5 8 1.8755 -0.5012 -2.3624 6 7 2.7747 -1.7998 -0.7123 7 6 2.7991 -1.8243 0.6726 8 7 3.3810 -2.6614 1.5348 9 6 3.2603 -2.4861 2.8342 10 7 2.5689 -1.4910 3.3512 11 6 1.9555 -0.6091 2.5590 12 7 1.2276 0.4395 3.0982 13 6 1.8508 1.7548 3.2644 14 6 -0.0746 0.2463 3.4756 15 1 -0.5728 -0.6827 3.2406 16 6 -0.7544 1.2446 4.1604 17 7 -0.1848 2.4144 4.3538 18 14 -2.4778 0.9265 4.8071 19 1 -2.3962 0.3807 6.1857 20 1 -3.2431 2.1990 4.8231 21 1 -3.1639 -0.0528 3.9266 22 6 2.0629 -0.7637 1.1865 23 1 -0.3632 -1.0270 -0.0379 24 1 -0.3633 0.4807 0.9082 25 1 -0.3633 0.5462 -0.8705 26 1 3.2227 -2.4535 -1.2714 27 1 3.7457 -3.1838 3.5006 28 1 2.8598 1.7334 2.8524 29 1 1.2600 2.5058 2.7399 30 1 1.8965 2.0039 4.3245 31 1 -0.6595 3.1118 4.8326 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166799659.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:38 Heat of formation + Delta-G solvation = 64.085385 kcal Electronic energy + Delta-G solvation = -18260.501693 eV Core-core repulsion = 15350.915858 eV Total energy + Delta-G solvation = -2909.585834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72197 -39.26782 -36.47704 -36.01630 -33.22392 -32.03876 -30.91687 -28.94347 -26.36691 -25.33320 -24.29135 -22.47444 -21.80049 -20.19017 -18.43816 -17.56785 -16.83503 -16.16299 -15.90832 -15.02741 -14.76857 -14.16841 -14.05417 -13.93061 -13.66406 -13.09615 -12.49136 -12.17065 -11.76887 -11.51999 -11.48228 -11.29169 -10.91607 -10.75919 -10.36341 -10.34161 -10.17898 -9.87461 -9.29081 -8.95576 -8.73076 -8.41431 -7.46333 -6.00122 -3.47035 1.28213 1.52197 2.56692 2.72796 3.25812 3.32174 3.32769 4.09183 4.18429 4.28903 4.55387 4.65377 4.82842 5.04427 5.25335 5.49598 5.61591 5.76948 6.02956 6.15999 6.27125 6.34563 6.46129 6.56995 6.79810 6.93900 7.29605 7.45832 7.53753 7.63328 7.95390 8.06527 8.68283 8.89324 9.53315 9.85564 10.97782 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.008385 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.299382 B = 3338.683282 C = 3882.827937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 H 0.123 0.877 4 C 0.539 3.461 5 O -0.499 6.499 6 N -0.644 5.644 7 C 0.383 3.617 8 N -0.567 5.567 9 C 0.327 3.673 10 N -0.544 5.544 11 C 0.490 3.510 12 N -0.543 5.543 13 C 0.171 3.829 14 C -0.256 4.256 15 H 0.080 0.920 16 C 0.015 3.985 17 N -0.899 5.899 18 Si 0.916 3.084 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.249 4.249 23 H 0.049 0.951 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.413 0.587 27 H 0.194 0.806 28 H -0.004 1.004 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -4.944 -5.411 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.081 4.081 3 H 0.140 0.860 4 C 0.327 3.673 5 O -0.372 6.372 6 N -0.291 5.291 7 C 0.144 3.856 8 N -0.290 5.290 9 C 0.036 3.964 10 N -0.265 5.265 11 C 0.255 3.745 12 N -0.262 5.262 13 C 0.028 3.972 14 C -0.383 4.383 15 H 0.098 0.902 16 C -0.184 4.184 17 N -0.542 5.542 18 Si 0.745 3.255 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.261 4.261 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.251 0.749 27 H 0.210 0.790 28 H 0.014 0.986 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.381 -5.025 -5.330 8.536 hybrid contribution -0.815 -0.143 -0.251 0.865 sum 3.566 -5.168 -5.581 8.401 Atomic orbital electron populations 1.21632 0.89789 1.02356 1.04779 1.20351 0.99422 1.00071 0.88290 0.85970 1.20910 0.76290 0.79914 0.90166 1.90773 1.58510 1.69734 1.18167 1.43433 1.51280 1.29819 1.04547 1.18452 0.91487 0.91128 0.84507 1.67560 1.26520 1.30772 1.04191 1.24538 0.91982 0.92801 0.87075 1.69128 1.10370 1.05709 1.41295 1.17716 0.84605 0.86639 0.85584 1.41563 1.09205 1.04176 1.71209 1.21265 0.90924 0.83505 1.01461 1.19197 0.84576 1.01965 1.32556 0.90245 1.24999 0.99437 0.95832 0.98174 1.70178 1.37259 1.03347 1.43434 0.86073 0.82660 0.77422 0.79368 1.20949 1.21252 1.20174 1.21758 1.07018 1.00719 0.96654 0.93147 0.87822 0.92024 0.74897 0.78991 0.98574 0.92348 0.92329 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.31 37.16 0.35 -1.80 16 2 C -0.06 -0.99 3.58 -92.46 -0.33 -1.32 16 3 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 4 C 0.54 8.66 8.05 -10.73 -0.09 8.57 16 5 O -0.50 -8.92 18.03 5.56 0.10 -8.82 16 6 N -0.64 -9.39 5.83 -11.22 -0.07 -9.45 16 7 C 0.38 6.46 8.32 -154.58 -1.29 5.17 16 8 N -0.57 -9.42 10.48 -13.90 -0.15 -9.56 16 9 C 0.33 5.42 12.24 -92.31 -1.13 4.29 16 10 N -0.54 -11.07 10.51 -14.00 -0.15 -11.22 16 11 C 0.49 10.40 6.00 -154.73 -0.93 9.47 16 12 N -0.54 -12.75 2.95 -122.43 -0.36 -13.11 16 13 C 0.17 3.93 8.96 59.85 0.54 4.46 16 14 C -0.26 -6.41 8.49 -15.05 -0.13 -6.54 16 15 H 0.08 2.00 7.84 -52.48 -0.41 1.59 16 16 C 0.02 0.38 5.46 -17.45 -0.10 0.29 16 17 N -0.90 -23.41 9.46 55.49 0.52 -22.88 16 18 Si 0.92 20.27 29.56 -169.99 -5.02 15.25 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 C -0.25 -4.62 5.68 -104.18 -0.59 -5.21 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.10 2.00 6.69 -51.94 -0.35 1.65 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.41 4.91 8.96 -40.82 -0.37 4.54 16 27 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 28 H 0.00 -0.09 7.90 -51.93 -0.41 -0.50 16 29 H 0.06 1.39 7.14 -51.93 -0.37 1.02 16 30 H 0.06 1.47 6.96 -51.93 -0.36 1.11 16 31 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -28.00 270.48 -7.83 -35.83 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.09 Total: 2.51 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: -3.69 Total: 17.38 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.19 Total: -66.23 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.10 Total: -8.82 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.00 -7.83 -35.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799659.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.914 kcal (2) G-P(sol) polarization free energy of solvation -28.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds