Wall clock time and date at job start Mon Mar 30 2020 18:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.49250 * 2 1 4 4 C 1.51515 * 110.55110 * 237.29765 * 2 1 3 5 5 O 1.21271 * 126.48793 * 61.22366 * 4 2 1 6 6 N 1.34453 * 107.01828 * 241.48681 * 4 2 1 7 7 C 1.38529 * 112.39607 * 359.61921 * 6 4 2 8 8 N 1.33516 * 131.63082 * 180.08321 * 7 6 4 9 9 C 1.31674 * 120.92086 * 180.28643 * 8 7 6 10 10 N 1.31734 * 122.41034 * 0.04692 * 9 8 7 11 11 C 1.33476 * 120.48475 * 359.97438 * 10 9 8 12 12 N 1.38576 * 120.69471 * 180.02562 * 11 10 9 13 13 C 1.46498 * 120.00426 * 95.79162 * 12 11 10 14 14 C 1.36939 * 120.00084 * 275.78203 * 12 11 10 15 15 H 1.08010 * 119.99738 * 352.29929 * 14 12 11 16 16 C 1.38842 * 120.00459 * 172.29746 * 14 12 11 17 17 N 1.31536 * 119.99628 * 5.38936 * 16 14 12 18 18 Si 1.86802 * 120.00166 * 185.39301 * 16 14 12 19 19 H 1.48491 * 109.47095 * 90.00017 * 18 16 14 20 20 H 1.48497 * 109.46914 * 209.99781 * 18 16 14 21 21 H 1.48497 * 109.47060 * 329.99535 * 18 16 14 22 22 C 1.38542 * 118.60006 * 359.97438 * 11 10 9 23 23 H 1.09001 * 109.46618 * 177.88622 * 1 2 3 24 24 H 1.08989 * 109.47134 * 297.88897 * 1 2 3 25 25 H 1.09002 * 109.46635 * 57.89313 * 1 2 3 26 26 H 0.96990 * 123.80513 * 179.73062 * 6 4 2 27 27 H 1.08001 * 118.79436 * 180.02562 * 9 8 7 28 28 H 1.09006 * 109.46935 * 3.62185 * 13 12 11 29 29 H 1.08996 * 109.47645 * 123.62472 * 13 12 11 30 30 H 1.08998 * 109.46988 * 243.62715 * 13 12 11 31 31 H 0.97002 * 120.00007 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9116 1.0210 0.0000 4 6 2.0619 -0.7665 -1.1938 5 8 1.8755 -0.5012 -2.3624 6 7 2.7747 -1.7998 -0.7123 7 6 2.7991 -1.8243 0.6726 8 7 3.3810 -2.6614 1.5348 9 6 3.2603 -2.4861 2.8342 10 7 2.5689 -1.4910 3.3512 11 6 1.9555 -0.6091 2.5590 12 7 1.2276 0.4395 3.0982 13 6 1.8508 1.7548 3.2644 14 6 -0.0746 0.2463 3.4756 15 1 -0.5728 -0.6827 3.2406 16 6 -0.7544 1.2446 4.1604 17 7 -0.1848 2.4144 4.3538 18 14 -2.4778 0.9265 4.8071 19 1 -2.3962 0.3807 6.1857 20 1 -3.2431 2.1990 4.8231 21 1 -3.1639 -0.0528 3.9266 22 6 2.0629 -0.7637 1.1865 23 1 -0.3632 -1.0270 -0.0379 24 1 -0.3633 0.4807 0.9082 25 1 -0.3633 0.5462 -0.8705 26 1 3.2227 -2.4535 -1.2714 27 1 3.7457 -3.1838 3.5006 28 1 2.8598 1.7334 2.8524 29 1 1.2600 2.5058 2.7399 30 1 1.8965 2.0039 4.3245 31 1 -0.6595 3.1118 4.8326 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799659.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:10:38 Heat of formation + Delta-G solvation = 47.527320 kcal Electronic energy + Delta-G solvation = -18261.219704 eV Core-core repulsion = 15350.915858 eV Total energy + Delta-G solvation = -2910.303846 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.13204 -40.69465 -38.05838 -37.51376 -34.76482 -33.52410 -32.59003 -30.43801 -28.20802 -26.78298 -25.90216 -23.88746 -23.39733 -21.57276 -19.90476 -19.21995 -18.33408 -17.78664 -17.27808 -16.59039 -16.28059 -15.66889 -15.53765 -15.30473 -15.24013 -14.77736 -14.12236 -13.72957 -13.28258 -13.17423 -12.88555 -12.78803 -12.69626 -12.53304 -12.10054 -12.02638 -11.77723 -11.29829 -10.79371 -10.71740 -10.30071 -9.83574 -9.27974 -7.87473 -5.38836 -0.13395 0.03093 1.22273 1.40598 1.49227 1.51619 1.58600 2.37929 2.80143 2.84137 2.95083 3.21985 3.29450 3.53868 3.66718 4.11136 4.14831 4.38650 4.57774 4.67866 4.83230 4.91698 5.05209 5.24030 5.37338 5.44957 5.48313 5.60885 5.74611 6.04272 6.21883 6.69029 7.00326 7.24492 7.72616 8.03601 9.09970 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.008385 C = 0.007210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.299382 B = 3338.683282 C = 3882.827937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.061 4.061 3 H 0.128 0.872 4 C 0.553 3.447 5 O -0.511 6.511 6 N -0.626 5.626 7 C 0.393 3.607 8 N -0.554 5.554 9 C 0.335 3.665 10 N -0.574 5.574 11 C 0.474 3.526 12 N -0.561 5.561 13 C 0.191 3.809 14 C -0.257 4.257 15 H 0.072 0.928 16 C -0.031 4.031 17 N -0.927 5.927 18 Si 0.971 3.029 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.269 1.269 22 C -0.256 4.256 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.430 0.570 27 H 0.237 0.763 28 H 0.014 0.986 29 H 0.042 0.958 30 H 0.029 0.971 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -6.679 -6.538 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.083 4.083 3 H 0.145 0.855 4 C 0.340 3.660 5 O -0.385 6.385 6 N -0.274 5.274 7 C 0.152 3.848 8 N -0.277 5.277 9 C 0.045 3.955 10 N -0.294 5.294 11 C 0.240 3.760 12 N -0.281 5.281 13 C 0.048 3.952 14 C -0.385 4.385 15 H 0.090 0.910 16 C -0.227 4.227 17 N -0.572 5.572 18 Si 0.799 3.201 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.268 4.268 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.271 0.729 27 H 0.253 0.747 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.158 -6.827 -6.494 10.742 hybrid contribution -0.895 0.234 -0.016 0.926 sum 4.262 -6.593 -6.511 10.199 Atomic orbital electron populations 1.21497 0.89843 1.02337 1.04084 1.20392 0.99419 1.00475 0.88052 0.85486 1.20576 0.76082 0.79845 0.89469 1.90786 1.59056 1.70056 1.18569 1.43211 1.50755 1.29749 1.03681 1.18534 0.90577 0.90335 0.85342 1.67724 1.25776 1.30028 1.04192 1.25382 0.90349 0.92197 0.87541 1.69042 1.11639 1.06618 1.42140 1.17881 0.85057 0.86634 0.86379 1.41503 1.09219 1.04952 1.72444 1.20880 0.91448 0.83453 0.99449 1.19210 0.85941 1.01374 1.31987 0.90962 1.25593 1.02327 0.95830 0.98972 1.70317 1.38225 1.03845 1.44816 0.85220 0.79460 0.77071 0.78391 1.21501 1.21452 1.19420 1.21752 1.07264 1.01663 0.96134 0.92980 0.90582 0.90396 0.72864 0.74704 0.96783 0.93940 0.95236 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 9.31 71.98 0.67 -3.24 16 2 C -0.06 -1.96 3.58 -11.99 -0.04 -2.00 16 3 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 4 C 0.55 16.27 8.05 87.97 0.71 16.98 16 5 O -0.51 -16.91 18.03 -3.00 -0.05 -16.96 16 6 N -0.63 -16.20 5.83 -307.98 -1.80 -18.00 16 7 C 0.39 12.10 8.32 132.85 1.10 13.20 16 8 N -0.55 -16.51 10.48 -197.89 -2.07 -18.58 16 9 C 0.33 10.08 12.24 180.94 2.22 12.29 16 10 N -0.57 -22.45 10.51 -198.21 -2.08 -24.54 16 11 C 0.47 19.77 6.00 132.74 0.80 20.56 16 12 N -0.56 -26.63 2.95 -541.27 -1.59 -28.23 16 13 C 0.19 8.98 8.96 127.77 1.14 10.12 16 14 C -0.26 -13.12 8.49 84.04 0.71 -12.41 16 15 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 16 C -0.03 -1.61 5.46 84.88 0.46 -1.14 16 17 N -0.93 -49.80 9.46 21.65 0.20 -49.60 16 18 Si 0.97 42.34 29.56 68.60 2.03 44.37 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C -0.26 -9.11 5.68 -19.58 -0.11 -9.22 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.08 2.95 6.69 -2.39 -0.02 2.93 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 26 H 0.43 8.59 8.96 -92.72 -0.83 7.76 16 27 H 0.24 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.01 0.57 7.90 -2.38 -0.02 0.56 16 29 H 0.04 2.09 7.14 -2.39 -0.02 2.08 16 30 H 0.03 1.53 6.96 -2.39 -0.02 1.51 16 31 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 Total: -1.00 -59.79 270.48 2.64 -57.15 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.35 Total: 9.23 kcal Atomic # 6 Polarization: 37.49 SS G_CDS: 7.66 Total: 45.15 kcal Atomic # 7 Polarization: -131.60 SS G_CDS: -7.34 Total: -138.94 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.05 Total: -16.96 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -59.79 2.64 -57.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799659.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.676 kcal (2) G-P(sol) polarization free energy of solvation -59.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds